RchiOBHm_Chr7g0191151

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002783
Physical Location & Seq
Reverse (-)
9983318 .. 9983856
539 bp
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UTR
Exon/CDS
Intron
PRQ17079

Sequence Viewer

Length: 438 bp
ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCAGCCACCACCACCACCACAACAAGAGTTCACTCTTCCGCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTCGTTGCCAGCTGGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGGCCAGGTGTTGGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCAACCGGTTCAGGAGGGAGGTCATCAGGGCCGGCGTGTTCCTGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGAAGGAACAAGAACAACCCCCAAAGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

145

Amino Acids

16.47

Weight (kDa)

11.36

Isoelectric Point (pI)

82.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 74 - 118 4.8e-12 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 226
AciI CCGC 2 cut(s) 83, 149
AcoI YGGCCR 3 cut(s) 174, 204, 217
AcuI CTGAAG 2 cut(s) 29, 181
AcvI CACGTG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 360
AfiI CCNNNNNNNGG 3 cut(s) 148, 226, 432
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 3 cut(s) 219, 300, 336
AluBI AGCT 4 cut(s) 14, 25, 135, 201
AluI AGCT 4 cut(s) 14, 25, 135, 201
Alw21I GWGCWC 1 cut(s) 192
AoxI GGCC 5 cut(s) 138, 174, 204, 217, 288
ApaI GGGCCC 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 5, 8, 11, 401
AsiGI ACCGGT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 4 cut(s) 138, 139, 229, 288
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 1 cut(s) 142
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 23, 388
BccI CCATC 3 cut(s) 124, 151, 371
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 3 cut(s) 221, 302, 338
BfaI CTAG 2 cut(s) 393, 405
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 363
BglI GCCNNNNNGGC 2 cut(s) 137, 146
BisI GCNGC 4 cut(s) 6, 9, 12, 402
BlsI GCNGC 4 cut(s) 7, 10, 13, 403
Bme1390I CCNGG 3 cut(s) 221, 302, 338
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 4 cut(s) 138, 139, 229, 288
BmiI GGNNCC 4 cut(s) 140, 141, 257, 361
BmrFI CCNGG 3 cut(s) 221, 302, 338
BpmI CTGGAG 1 cut(s) 323
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 360
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 226, 432
Bse118I RCCGGY 3 cut(s) 206, 264, 290
BseBI CCWGG 3 cut(s) 221, 302, 338
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 3 cut(s) 148, 226, 432
BseRI GAGGAG 6 cut(s) 17, 22, 29, 248, 263, 331
BseSI GKGCMC 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 23, 388
BseYI CCCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 140, 176, 206, 219, 290
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 4 cut(s) 207, 245, 265, 291
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 3 cut(s) 148, 226, 432
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 5 cut(s) 140, 176, 206, 219, 290
Bsp120I GGGCCC 1 cut(s) 138
Bsp1286I GDGCHC 2 cut(s) 142, 192
BspACI CCGC 2 cut(s) 83, 149
BspANI GGCC 5 cut(s) 140, 176, 206, 219, 290
BspLI GGNNCC 4 cut(s) 140, 141, 257, 361
BspMAI CTGCAG 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 359
BsrFI RCCGGY 3 cut(s) 206, 264, 290
BssAI RCCGGY 3 cut(s) 206, 264, 290
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 221, 302, 338
Bst6I CTCTTC 5 cut(s) 84, 197, 308, 344, 377
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 5 cut(s) 133, 174, 208, 292, 399
BstF5I GGATG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 398
BstNI CCWGG 3 cut(s) 221, 302, 338
BstSCI CCNGG 3 cut(s) 219, 300, 336
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 23, 388
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 5 cut(s) 140, 176, 206, 219, 290
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 5 cut(s) 133, 174, 208, 292, 399
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 3 cut(s) 206, 264, 290
Cfr13I GGNCC 4 cut(s) 138, 139, 229, 288
CspAI ACCGGT 1 cut(s) 264
DinI GGCGCC 1 cut(s) 361
EaeI YGGCCR 3 cut(s) 174, 204, 217
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 84, 197, 308, 344, 377
EarI CTCTTC 5 cut(s) 84, 197, 308, 344, 377
EciI GGCGGA 2 cut(s) 72, 164
EclXI CGGCCG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 29, 181
Eco72I CACGTG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 219, 300, 336
EcoT38I GRGCYC 1 cut(s) 142
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 402
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 402
FspBI CTAG 2 cut(s) 393, 405
GlaI GCGC 1 cut(s) 361
GluI GCNGC 4 cut(s) 6, 9, 12, 402
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 5 cut(s) 140, 176, 206, 219, 290
HapII CCGG 4 cut(s) 207, 245, 265, 291
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 360
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HpaII CCGG 4 cut(s) 207, 245, 265, 291
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 271, 328
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 3 cut(s) 53, 348, 402
HpyCH4IV ACGT 2 cut(s) 88, 186
HpyCH4V TGCA 2 cut(s) 11, 309
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 398
HpySE526I ACGT 2 cut(s) 88, 186
Hsp92I GRCGYC 1 cut(s) 360
HspAI GCGC 1 cut(s) 360
KasI GGCGCC 1 cut(s) 359
KroI GCCGGC 2 cut(s) 206, 290
KroNI GCCGGC 2 cut(s) 208, 292
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 30, 261
Lsp1109I GCAGC 2 cut(s) 23, 388
MaeI CTAG 2 cut(s) 393, 405
MaeII ACGT 2 cut(s) 88, 186
MboII GAAGA 8 cut(s) 71, 184, 187, 325, 358, 361, 391, 394
MhlI GDGCHC 2 cut(s) 142, 192
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 360
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 206, 290
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 4 cut(s) 207, 245, 265, 291
MspR9I CCNGG 3 cut(s) 221, 302, 338
MvaI CCWGG 3 cut(s) 221, 302, 338
MwoI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 398
NaeI GCCGGC 2 cut(s) 208, 292
NarI GGCGCC 1 cut(s) 360
NgoMIV GCCGGC 2 cut(s) 206, 290
NlaIV GGNNCC 4 cut(s) 140, 141, 257, 361
NmeAIII GCCGAG 1 cut(s) 182
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 2 cut(s) 208, 292
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 4 cut(s) 7, 10, 13, 403
PluTI GGCGCC 1 cut(s) 363
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 219, 300, 336
PspCI CACGTG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 3 cut(s) 219, 300, 336
PspN4I GGNNCC 4 cut(s) 140, 141, 257, 361
PspOMI GGGCCC 1 cut(s) 138
PspPI GGNCC 4 cut(s) 138, 139, 229, 288
PstI CTGCAG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 4 cut(s) 6, 9, 12, 402
Sau96I GGNCC 4 cut(s) 138, 139, 229, 288
ScrFI CCNGG 3 cut(s) 221, 302, 338
SduI GDGCHC 2 cut(s) 142, 192
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 361
SinI GGWCC 1 cut(s) 229
SsiI CCGC 2 cut(s) 83, 149
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 2 cut(s) 393, 405
StyD4I CCNGG 3 cut(s) 219, 300, 336
TaiI ACGT 2 cut(s) 91, 189
TaqI TCGA 1 cut(s) 327
TseI GCWGC 4 cut(s) 5, 8, 11, 401
TspGWI ACGGA 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 229
XspI CTAG 2 cut(s) 393, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.