Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002783

Physical Location & Seq

Genomic Coordinates Forward (+)

780603 .. 781059

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1012000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGGGCCGGCGTTATTCAGGAGGTTAAGAGGAGGAGGTACTTTGAGAACAAGCAGGACGAGAAGAAGCGCCGGACTCGCGACGCCACAAAGCGAAACAAGAGAAGCCGGCGTCCCTTTTCAAGACCCTTTCAGCAGAAGCCGGAAGTCCCCGAAACCAAGAAGAGCGATGACGATGGAGATAACTGGAATCTTCCTCAAGGAGACATACCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S21

Protein Analysis

73

Amino Acids

8.78

Weight (kDa)

10.37

Isoelectric Point (pI)

110.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27160 AT3G27160
fragaria_vesca	FvH4_5g07520 FvH4_6g53290
malus_domestica	MD09G1012000.v1.1 MD17G1012600.v1.1
prunus_persica	Prupe.3G305100_v2.0.a1 Prupe.5G156900_v2.0.a1
pyrus_communis	pycom17g01010
rosa_chinensis	RchiOBHm_Chr2g0088911 RchiOBHm_Chr2g0088961 RchiOBHm_Chr2g0089001 RchiOBHm_Chr2g0175441 RchiOBHm_Chr7g0191151
rosa_laevigata	RLG00000004474 RLG00000022327 RLG00000023458
rosa_multiflora	Rmu_co8428859.1_g000001 Rmu_sc0003512.1_g000011 Rmu_sc0007343.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077340 Rroxscaffold_3G00264000
rosa_rugosa	Rorug02G0584200 Rorug06G0509000 Rorug06G0509100
rosa_samantha	Rh1AG145100 Rh1CG136600 Rh1DG151700 Rh2AG664200 Rh2BG674900 Rh2CG041600 Rh2CG638100 Rh2DG688900 Rh7AG116400 Rh7CG121300 Rh7DG119600
rosa_wichuraiana	Rw2G003240 Rw2G054430 Rw3G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	81
AcyI	GRCGYC	2 cut(s)	84, 112
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	6
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	183
BsaHI	GRCGYC	2 cut(s)	84, 112
Bse118I	RCCGGY	2 cut(s)	8, 108
Bse1I	ACTGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	2 cut(s)	46, 49
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	8
BsiSI	CCGG	4 cut(s)	9, 73, 109, 143
BslFI	GGGAC	2 cut(s)	99, 134
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	99, 134
BsnI	GGCC	1 cut(s)	8
Bsp68I	TCGCGA	1 cut(s)	81
BspANI	GGCC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	8, 108
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	2 cut(s)	8, 108
BssNI	GRCGYC	2 cut(s)	84, 112
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	84, 112
BstC8I	GCNNGC	2 cut(s)	10, 110
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	198
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstUI	CGCG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	183
BtuMI	TCGCGA	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	10, 110
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	8, 108
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	2 cut(s)	92, 101
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	3 cut(s)	8, 108, 142
CviKI_1	RGCY	3 cut(s)	8, 108, 142
CviQI	GTAC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
FaiI	YATR	1 cut(s)	209
FaqI	GGGAC	2 cut(s)	99, 134
GlaI	GCGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	4 cut(s)	9, 73, 109, 143
HgaI	GACGC	2 cut(s)	92, 101
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	2 cut(s)	84, 112
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	76, 190
HpaII	CCGG	4 cut(s)	9, 73, 109, 143
Hpy188III	TCNNGA	3 cut(s)	20, 80, 123
Hpy99I	CGWCG	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
Hsp92I	GRCGYC	2 cut(s)	84, 112
HspAI	GCGC	1 cut(s)	70
KroI	GCCGGC	2 cut(s)	8, 108
KroNI	GCCGGC	2 cut(s)	10, 110
LguI	GCTCTTC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	5, 22, 41, 86, 122, 156, 172
MboII	GAAGA	3 cut(s)	76, 175, 185
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	5 cut(s)	16, 24, 27, 30, 207
MroNI	GCCGGC	2 cut(s)	8, 108
MseI	TTAA	1 cut(s)	27
MspI	CCGG	4 cut(s)	9, 73, 109, 143
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	78
NaeI	GCCGGC	2 cut(s)	10, 110
NgoMIV	GCCGGC	2 cut(s)	8, 108
NruI	TCGCGA	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	158
PdiI	GCCGGC	2 cut(s)	10, 110
PfeI	GAWTC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	6
RruI	TCGCGA	1 cut(s)	81
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	70
SetI	ASST	2 cut(s)	27, 41
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.