Rmu_sc0003512.1_g000011

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003512.1
OG0002783
Physical Location & Seq
Reverse (-)
54302 .. 55194
893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003512.1_g000011.1.cds

Sequence Viewer

Length: 534 bp
atggctgcctcatcctctctctgcaacttcctctccttcctcacaccctcaaagcccccatcacaagccaaacccccaccaccccatctccatctctcccaaacccagaagcccagagacgccttcgtccctcttgtcgcccaacctggtccctctttctcttcttcctcttcggaattggagtccgtcatgaacccctctctggcttatgccaacactctcttcttcaagtcggcttacaatgtccaagtcatcgtcgacgagggcgagtccgaggagcgcctgctcaaccggttccggcgagaggtgatgagagctggcgtcatccaggaggttaagaggaggaggtacttcgagaacactcaggatgagaagaagcgcaggactcgcgatgctgctaagcgcaacaaaagaaggcgtaccttttcgaggcctccgcttatgcagaacagggggcaggaagtccctgtacagaagaagagtgatgaggacgaagataactgggatctacctcagggagacataccctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

177

Amino Acids

20.34

Weight (kDa)

9.71

Isoelectric Point (pI)

70.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 437
AclWI GGATC 1 cut(s) 513
AcyI GRCGYC 2 cut(s) 120, 321
AfaI GTAC 3 cut(s) 350, 421, 471
AfiI CCNNNNNNNGG 3 cut(s) 202, 304, 429
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 2 cut(s) 145, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 111, 513
AlwI GGATC 1 cut(s) 513
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 5, 395
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 3 cut(s) 282, 381, 405
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbvI GCAGC 1 cut(s) 382
BccI CCATC 3 cut(s) 67, 93, 99
BciT130I CCWGG 2 cut(s) 147, 329
BcoDI GTCTC 2 cut(s) 111, 513
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 2 cut(s) 6, 396
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 2 cut(s) 7, 397
Bme1390I CCNGG 2 cut(s) 147, 329
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 151, 296
BmrFI CCNGG 2 cut(s) 147, 329
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 511
Bpu1102I GCTNAGC 1 cut(s) 399
BsaHI GRCGYC 2 cut(s) 120, 321
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 72, 102
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 304, 429
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 506
Bse21I CCTNAGG 1 cut(s) 513
BseBI CCWGG 2 cut(s) 147, 329
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 11, 324, 373
BseLI CCNNNNNNNGG 3 cut(s) 202, 304, 429
BseMII CTCAG 2 cut(s) 377, 527
BseNI ACTGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 290, 355, 358
BseXI GCAGC 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 433
BshTI ACCGGT 1 cut(s) 291
BsiSI CCGG 2 cut(s) 292, 298
BslFI GGGAC 3 cut(s) 113, 135, 449
BslI CCNNNNNNNGG 3 cut(s) 202, 304, 429
BsmAI GTCTC 2 cut(s) 111, 513
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 3 cut(s) 113, 135, 449
BsnI GGCC 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 1 cut(s) 505
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 1 cut(s) 437
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 2 cut(s) 376, 526
BspFNI CGCG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 151, 296
BspPI GGATC 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 291
BsrGI TGTACA 1 cut(s) 469
BsrI ACTGG 1 cut(s) 506
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 505
BssNI GRCGYC 2 cut(s) 120, 321
Bst2UI CCWGG 2 cut(s) 147, 329
Bst6I CTCTTC 4 cut(s) 166, 175, 227, 473
BstACI GRCGYC 2 cut(s) 120, 321
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 2 cut(s) 284, 319
BstDEI CTNAG 3 cut(s) 363, 399, 513
BstENI CCTNNNNNAGG 1 cut(s) 427
BstF5I GGATG 3 cut(s) 11, 324, 373
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 3 cut(s) 282, 381, 405
BstKTI GATC 1 cut(s) 508
BstMAI GTCTC 2 cut(s) 111, 513
BstMBI GATC 1 cut(s) 505
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 2 cut(s) 147, 329
BstSCI CCNGG 2 cut(s) 145, 327
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 405
BtsCI GGATG 3 cut(s) 11, 324, 373
BtuMI TCGCGA 1 cut(s) 390
Cac8I GCNNGC 2 cut(s) 284, 319
CciI TCATGA 1 cut(s) 189
CfoI GCGC 3 cut(s) 282, 381, 405
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 2 cut(s) 128, 310
CsiI ACCWGGT 1 cut(s) 145
Csp6I GTAC 3 cut(s) 349, 420, 470
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 1 cut(s) 190
CviJI RGCY 8 cut(s) 5, 55, 68, 112, 206, 236, 317, 433
CviKI_1 RGCY 8 cut(s) 5, 55, 68, 112, 206, 236, 317, 433
CviQI GTAC 3 cut(s) 349, 420, 470
DdeI CTNAG 3 cut(s) 363, 399, 513
DpnI GATC 1 cut(s) 507
DpnII GATC 1 cut(s) 505
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 4 cut(s) 166, 175, 227, 473
EarI CTCTTC 4 cut(s) 166, 175, 227, 473
Eco147I AGGCCT 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 513
EcoNI CCTNNNNNAGG 1 cut(s) 427
EcoRII CCWGG 2 cut(s) 145, 327
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 193
FaiI YATR 4 cut(s) 191, 210, 443, 524
FaqI GGGAC 3 cut(s) 113, 135, 449
FatI CATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 6, 396
FokI GGATG 2 cut(s) 311, 380
Fsp4HI GCNGC 2 cut(s) 6, 396
GlaI GCGC 3 cut(s) 281, 380, 404
GluI GCNGC 2 cut(s) 6, 396
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 1 cut(s) 433
HapII CCGG 2 cut(s) 292, 298
HgaI GACGC 2 cut(s) 128, 310
HhaI GCGC 3 cut(s) 282, 381, 405
Hin1I GRCGYC 2 cut(s) 120, 321
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 3 cut(s) 280, 379, 403
HinP1I GCGC 3 cut(s) 280, 379, 403
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 3 cut(s) 182, 269, 385
HpaII CCGG 2 cut(s) 292, 298
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 175, 274
Hpy188III TCNNGA 4 cut(s) 190, 355, 365, 389
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 260, 263
HpyAV CCTTC 3 cut(s) 46, 133, 408
HpyCH4V TGCA 2 cut(s) 24, 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 3 cut(s) 363, 399, 513
Hsp92I GRCGYC 2 cut(s) 120, 321
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 3 cut(s) 280, 379, 403
Kzo9I GATC 1 cut(s) 505
LmnI GCTCC 1 cut(s) 277
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 382
MabI ACCWGGT 1 cut(s) 145
MalI GATC 1 cut(s) 507
MboI GATC 1 cut(s) 505
MboII GAAGA 9 cut(s) 153, 156, 162, 214, 217, 385, 487, 490, 506
MflI RGATCY 1 cut(s) 505
MluCI AATT 1 cut(s) 176
MlyI GAGTC 3 cut(s) 191, 278, 379
MseI TTAA 1 cut(s) 336
MspI CCGG 2 cut(s) 292, 298
MspR9I CCNGG 2 cut(s) 147, 329
MvaI CCWGG 2 cut(s) 147, 329
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 387
NdeII GATC 1 cut(s) 505
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 151, 296
NruI TCGCGA 1 cut(s) 390
PagI TCATGA 1 cut(s) 189
PceI AGGCCT 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 2 cut(s) 7, 397
PleI GAGTC 3 cut(s) 190, 277, 379
PpsI GAGTC 3 cut(s) 190, 277, 379
Psp6I CCWGG 2 cut(s) 145, 327
PspGI CCWGG 2 cut(s) 145, 327
PspN4I GGNNCC 2 cut(s) 151, 296
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 1 cut(s) 505
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 3 cut(s) 350, 421, 471
RsaNI GTAC 3 cut(s) 349, 420, 470
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 2 cut(s) 6, 396
Sau3AI GATC 1 cut(s) 505
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 3 cut(s) 191, 278, 379
ScrFI CCNGG 2 cut(s) 147, 329
SetI ASST 7 cut(s) 148, 309, 319, 336, 350, 425, 514
SexAI ACCWGGT 1 cut(s) 145
SfaNI GCATC 1 cut(s) 382
SgrDI CGTCGACG 1 cut(s) 257
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 176
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 1 cut(s) 437
StuI AGGCCT 1 cut(s) 433
StyD4I CCNGG 2 cut(s) 145, 327
TaqI TCGA 3 cut(s) 258, 354, 428
TasI AATT 1 cut(s) 176
TatI WGTACW 1 cut(s) 469
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 2 cut(s) 5, 395
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.