RLG00000004474

ribosomal protein S21

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002783
Physical Location & Seq
Forward (+)
59671414 .. 59674753
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004474

Sequence Viewer

Length: 480 bp
ATGGCGGCTGCTGCCTCCTCTCTTTCCAAGCTCCTCTCCTCCTTCCTCCAACTTCAGCCAACACCACCACCGCCGCCGGAACTCTCTCTTGCGTCACGTGTCCCTCTCCCTCCCAAGAAGATCCCATCCCCTCTGGTGACGGTCCAAGACAACGAGCCGGAGGAGTGGCTTCTCAATCGGTTCAGGAGGGAGGTCATCAGGACCGGCGTGTTTCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAATGGGCGCCATTTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGGAGGAACAAGAACAACTCCCAAAGGTCACCCCAATCAAGATATCAAAAGCAGTTCAAACAGCAAAAGCCGGAGAAGAAGGACAGTGAACCCAAGAGGAAAGAGGACAATGACAATGATGATAACTGGGACTTCTATGAAGTAGACCTTCCTTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

160

Amino Acids

18.75

Weight (kDa)

10.23

Isoelectric Point (pI)

81.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 46 - 89 5.4e-13 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 462
AciI CCGC 3 cut(s) 5, 71, 74
AclWI GGATC 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 38
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 249
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwI GGATC 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 8, 11, 314
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 2 cut(s) 142, 201
AsuHPI GGTGA 2 cut(s) 148, 339
AvaII GGWCC 2 cut(s) 142, 201
BanI GGYRCC 1 cut(s) 272
BbrPI CACGTG 1 cut(s) 98
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 251
BfaI CTAG 2 cut(s) 306, 318
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 5 cut(s) 6, 9, 12, 74, 315
BlsI GCNGC 5 cut(s) 7, 10, 13, 75, 316
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 2 cut(s) 142, 201
BmgT120I GGNCC 2 cut(s) 142, 201
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 5 cut(s) 7, 23, 28, 176, 244
BseXI GCAGC 1 cut(s) 301
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 4 cut(s) 77, 158, 204, 389
BslFI GGGAC 2 cut(s) 86, 461
BsmFI GGGAC 2 cut(s) 86, 461
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 3 cut(s) 5, 71, 74
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 2 cut(s) 142, 404
Bst6I CTCTTC 3 cut(s) 221, 257, 290
BstACI GRCGYC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 312
BstEII GGTNACC 1 cut(s) 345
BstF5I GGATG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 11, 311
BstNI CCWGG 1 cut(s) 251
BstPI GGTNACC 1 cut(s) 345
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 142, 201
CseI GACGC 1 cut(s) 81
CviJI RGCY 8 cut(s) 8, 31, 58, 157, 169, 305, 314, 388
CviKI_1 RGCY 8 cut(s) 8, 31, 58, 157, 169, 305, 314, 388
DinI GGCGCC 1 cut(s) 274
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 221, 257, 290
EarI CTCTTC 3 cut(s) 221, 257, 290
Eco32I GATATC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 142, 201
Eco57I CTGAAG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 345
EcoO65I GGTNACC 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 249
EcoRV GATATC 1 cut(s) 362
EgeI GGCGCC 1 cut(s) 274
EheI GGCGCC 1 cut(s) 274
FaiI YATR 2 cut(s) 456, 474
FalI AAGNNNNNCTT 1 cut(s) 450
FaqI GGGAC 2 cut(s) 86, 461
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 74, 315
FokI GGATG 1 cut(s) 112
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 74, 315
FspBI CTAG 2 cut(s) 306, 318
GlaI GCGC 1 cut(s) 274
GluI GCNGC 5 cut(s) 6, 9, 12, 74, 315
HaeII RGCGCY 1 cut(s) 276
HapII CCGG 4 cut(s) 77, 158, 204, 389
HgaI GACGC 1 cut(s) 81
HhaI GCGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 273
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HpaII CCGG 4 cut(s) 77, 158, 204, 389
HphI GGTGA 2 cut(s) 148, 339
Hpy166II GTNNAC 2 cut(s) 407, 463
Hpy188III TCNNGA 5 cut(s) 184, 199, 215, 241, 357
Hpy8I GTNNAC 2 cut(s) 407, 463
HpyAV CCTTC 3 cut(s) 52, 391, 476
HpyCH4III ACNGT 2 cut(s) 142, 404
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 311
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 273
HspAI GCGC 1 cut(s) 273
KasI GGCGCC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 2 cut(s) 306, 318
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 93, 136, 345
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 7 cut(s) 130, 238, 271, 274, 304, 307, 406
MflI RGATCY 1 cut(s) 120
MluCI AATT 1 cut(s) 475
Mly113I GGCGCC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 73
MspI CCGG 4 cut(s) 77, 158, 204, 389
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 2 cut(s) 11, 311
NarI GGCGCC 1 cut(s) 273
NdeII GATC 1 cut(s) 120
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 3 cut(s) 93, 136, 345
PkrI GCNGC 5 cut(s) 7, 10, 13, 75, 316
PluTI GGCGCC 1 cut(s) 276
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 98
PsiI TTATAA 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 249
PspCI CACGTG 1 cut(s) 98
PspEI GGTNACC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 142, 201
PsuI RGATCY 1 cut(s) 120
SatI GCNGC 5 cut(s) 6, 9, 12, 74, 315
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 142, 201
ScrFI CCNGG 1 cut(s) 251
SetI ASST 6 cut(s) 33, 100, 195, 236, 347, 468
SfoI GGCGCC 1 cut(s) 274
SinI GGWCC 2 cut(s) 142, 201
Sse9I AATT 1 cut(s) 475
SsiI CCGC 3 cut(s) 5, 71, 74
SspDI GGCGCC 1 cut(s) 272
SspMI CTAG 2 cut(s) 306, 318
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 142, 404
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 475
TauI GCSGC 2 cut(s) 8, 76
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 3 cut(s) 93, 136, 345
TseI GCWGC 3 cut(s) 8, 11, 314
Tsp45I GTSAC 3 cut(s) 93, 136, 345
TspDTI ATGAA 1 cut(s) 471
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 142, 201
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 2 cut(s) 306, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.