Rh1DG151700

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002783
Physical Location & Seq
Reverse (-)
31727626 .. 31729313
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG151700.1

Sequence Viewer

Length: 567 bp
ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCAGCCACCACCACCACCACAACAAGAGTTCACTCTTCCTCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTCGTTGCAAGCTCGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGCCCAGGTGACCGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCAACCGGTTCAGGAGGGAGGTCATTAGGGCCGGCGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGAAGGAACAAGAACAACCCCCAAAGGTCTCCACAATCAAGATATCGAAATCAGTTCAAACAGCAAAAACCTGAGAAGAAGGACAATGAACCCAAGAGGAATGAGGACGGTGACAATGATGATAACTGGGACTTCTATGAAGTAGACCTTCCTTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

188

Amino Acids

21.66

Weight (kDa)

10.22

Isoelectric Point (pI)

79.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 74 - 118 9.1e-13 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 359
AccI GTMKAC 1 cut(s) 549
AciI CCGC 1 cut(s) 149
AcoI YGGCCR 2 cut(s) 174, 204
AcuI CTGAAG 2 cut(s) 29, 181
AcvI CACGTG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 214, 463
AjnI CCWGG 2 cut(s) 219, 336
AluBI AGCT 4 cut(s) 14, 25, 135, 201
AluI AGCT 4 cut(s) 14, 25, 135, 201
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 438
AoxI GGCC 4 cut(s) 138, 174, 204, 288
ApeKI GCWGC 4 cut(s) 5, 8, 11, 401
AsiGI ACCGGT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 139, 288
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 235, 527
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 359
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 2 cut(s) 23, 388
BccI CCATC 3 cut(s) 124, 151, 371
BciT130I CCWGG 2 cut(s) 221, 338
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 393, 405
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 6, 9, 12, 402
BlsI GCNGC 4 cut(s) 7, 10, 13, 403
Bme1390I CCNGG 3 cut(s) 221, 302, 338
BmgT120I GGNCC 2 cut(s) 139, 288
BmiI GGNNCC 3 cut(s) 141, 257, 361
BmrFI CCNGG 3 cut(s) 221, 302, 338
BmrI ACTGGG 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 541
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 3 cut(s) 206, 264, 290
Bse1I ACTGG 1 cut(s) 536
BseBI CCWGG 2 cut(s) 221, 338
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 536
BseRI GAGGAG 6 cut(s) 17, 22, 29, 248, 263, 331
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 23, 388
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 140, 176, 206, 290
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 207, 245, 265, 291, 301
BslFI GGGAC 2 cut(s) 77, 548
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 77, 548
BsnI GGCC 4 cut(s) 140, 176, 206, 290
Bso31I GGTCTC 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 1 cut(s) 149
BspANI GGCC 4 cut(s) 140, 176, 206, 290
BspCNI CTCAG 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 141, 257, 361
BspMAI CTGCAG 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 438
BsrFI RCCGGY 3 cut(s) 206, 264, 290
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 3 cut(s) 206, 264, 290
BssECI CCNNGG 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 221, 338
Bst4CI ACNGT 2 cut(s) 229, 515
Bst6I CTCTTC 5 cut(s) 84, 197, 308, 344, 377
BstACI GRCGYC 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 5 cut(s) 133, 174, 208, 292, 399
BstDEI CTNAG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 1 cut(s) 362
BstMAI GTCTC 1 cut(s) 438
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 5 cut(s) 11, 137, 146, 207, 398
BstNI CCWGG 2 cut(s) 221, 338
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 3 cut(s) 219, 300, 336
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 2 cut(s) 23, 388
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 4 cut(s) 140, 176, 206, 290
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 5 cut(s) 133, 174, 208, 292, 399
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 3 cut(s) 206, 264, 290
Cfr13I GGNCC 2 cut(s) 139, 288
CspAI ACCGGT 1 cut(s) 264
DdeI CTNAG 1 cut(s) 477
DinI GGCGCC 1 cut(s) 361
EaeI YGGCCR 2 cut(s) 174, 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 84, 197, 308, 344, 377
EarI CTCTTC 5 cut(s) 84, 197, 308, 344, 377
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 438
Eco32I GATATC 1 cut(s) 449
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 29, 181
Eco72I CACGTG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 219, 336
EcoRV GATATC 1 cut(s) 449
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
FaiI YATR 2 cut(s) 543, 561
FalI AAGNNNNNCTT 1 cut(s) 537
FaqI GGGAC 2 cut(s) 77, 548
FblI GTMKAC 1 cut(s) 549
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 402
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 402
FspBI CTAG 2 cut(s) 393, 405
GlaI GCGC 1 cut(s) 361
GluI GCNGC 4 cut(s) 6, 9, 12, 402
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 140, 176, 206, 290
HapII CCGG 5 cut(s) 207, 245, 265, 291, 301
HhaI GCGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 360
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HpaII CCGG 5 cut(s) 207, 245, 265, 291, 301
HphI GGTGA 2 cut(s) 235, 527
Hpy166II GTNNAC 2 cut(s) 75, 550
Hpy188III TCNNGA 3 cut(s) 271, 328, 444
Hpy8I GTNNAC 2 cut(s) 75, 550
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 53, 348, 402, 478, 563
HpyCH4III ACNGT 2 cut(s) 229, 515
HpyCH4IV ACGT 2 cut(s) 88, 186
HpyCH4V TGCA 3 cut(s) 11, 131, 309
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 137, 146, 207, 398
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 2 cut(s) 88, 186
Hsp92I GRCGYC 1 cut(s) 360
HspAI GCGC 1 cut(s) 360
KasI GGCGCC 1 cut(s) 359
KroI GCCGGC 2 cut(s) 206, 290
KroNI GCCGGC 2 cut(s) 208, 292
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 30, 261
Lsp1109I GCAGC 2 cut(s) 23, 388
MaeI CTAG 2 cut(s) 393, 405
MaeII ACGT 2 cut(s) 88, 186
MaeIII GTNAC 2 cut(s) 223, 515
MboII GAAGA 9 cut(s) 71, 184, 187, 325, 358, 361, 391, 394, 493
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 1 cut(s) 562
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 360
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 206, 290
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspI CCGG 5 cut(s) 207, 245, 265, 291, 301
MspR9I CCNGG 3 cut(s) 221, 302, 338
MvaI CCWGG 2 cut(s) 221, 338
MwoI GCNNNNNNNGC 5 cut(s) 11, 137, 146, 207, 398
NaeI GCCGGC 2 cut(s) 208, 292
NarI GGCGCC 1 cut(s) 360
NciI CCSGG 1 cut(s) 302
NgoMIV GCCGGC 2 cut(s) 206, 290
NlaIV GGNNCC 3 cut(s) 141, 257, 361
NmeAIII GCCGAG 2 cut(s) 116, 182
NmuCI GTSAC 2 cut(s) 223, 515
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 2 cut(s) 208, 292
PfoI TCCNGGA 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 4 cut(s) 7, 10, 13, 403
PluTI GGCGCC 1 cut(s) 363
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PsiI TTATAA 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 219, 336
PspCI CACGTG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 219, 336
PspN4I GGNNCC 3 cut(s) 141, 257, 361
PspPI GGNCC 2 cut(s) 139, 288
PstI CTGCAG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 4 cut(s) 6, 9, 12, 402
Sau96I GGNCC 2 cut(s) 139, 288
ScrFI CCNGG 3 cut(s) 221, 302, 338
SduI GDGCHC 1 cut(s) 192
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 361
Sse9I AATT 1 cut(s) 562
SsiI CCGC 1 cut(s) 149
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 2 cut(s) 393, 405
StyD4I CCNGG 3 cut(s) 219, 300, 336
TaaI ACNGT 2 cut(s) 229, 515
TaiI ACGT 2 cut(s) 91, 189
TaqI TCGA 2 cut(s) 327, 451
TasI AATT 1 cut(s) 562
TseFI GTSAC 2 cut(s) 223, 515
TseI GCWGC 4 cut(s) 5, 8, 11, 401
Tsp45I GTSAC 2 cut(s) 223, 515
TspDTI ATGAA 2 cut(s) 507, 558
TspGWI ACGGA 1 cut(s) 156
XmiI GTMKAC 1 cut(s) 549
XspI CTAG 2 cut(s) 393, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.