Prupe.5G156900_v2.0.a1

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0002783
Physical Location & Seq
Reverse (-)
13958945 .. 13960311
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G156900.1

Sequence Viewer

Length: 525 bp
ATGGCCGCTGTCTCCAAGCTCCTCTCTTCCATCCTTCCCTCAAAAGCATCACCACCACAGCCATCACCATCATCATCAAACCTTCCTCTGCCACCACGTGTCTCTCTTCCCAAAACCCCATCTTGGAGGGCCCCACTGGTGGCCACCTGGACGCCATCATCAAGTCCTTCTTCCTCATCTTTAGCCAGTATATTGTGGCCCTCACTGGCATACTCAAACACCCTCTTCTTCAAATCAGCGTACAACGTTCAGATCGTAGTGCAAGACAACGATTCCGAGGAAAAGCTTGTTGGGAGGTTCAGAAAGGAGGTTCTGAGGGCTGGTGTGTTGCAAGAGTGCAAGACCAGGAGGTTCTTCGAGAACAAACGGGAGAAGAAGCAGAGAAAGACTAGACAGGCTGCCAGAAAGAACCGCAAAAGGTATCCACAATCAAAAGATCCAAGGCAGGACAAACCGGAAGCGAGGATAAACGACGACAAAGAAGACGATAACTGGGACTACGATGTAGAACTTCCATATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

175

Amino Acids

19.88

Weight (kDa)

9.96

Isoelectric Point (pI)

74.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 6, 412
AclI AACGTT 1 cut(s) 246
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 2 cut(s) 3, 141
AcvI CACGTG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 123, 139
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 2 cut(s) 146, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 19, 286
AluI AGCT 2 cut(s) 19, 286
Alw26I GTCTC 2 cut(s) 16, 106
AlwI GGATC 1 cut(s) 431
AoxI GGCC 4 cut(s) 3, 129, 141, 197
ApaI GGGCCC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 129, 130, 198
AsuHPI GGTGA 2 cut(s) 42, 57
BaeGI GKGCMC 1 cut(s) 133
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 133
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 385
BccI CCATC 5 cut(s) 38, 70, 76, 127, 163
BciT130I CCWGG 2 cut(s) 148, 346
BciVI GTATCC 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 16, 106
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 2 cut(s) 6, 399
BlsI GCNGC 2 cut(s) 7, 400
Bme1390I CCNGG 2 cut(s) 148, 346
BmgT120I GGNCC 3 cut(s) 129, 130, 198
BmiI GGNNCC 2 cut(s) 131, 132
BmrFI CCNGG 2 cut(s) 148, 346
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 276, 440
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 139
Bse1I ACTGG 4 cut(s) 141, 186, 210, 497
BseBI CCWGG 2 cut(s) 148, 346
BseDI CCNNGG 2 cut(s) 276, 440
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 123, 139
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 4 cut(s) 141, 186, 210, 497
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 4 cut(s) 5, 131, 143, 199
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 123, 139
BsmAI GTCTC 2 cut(s) 16, 106
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 4 cut(s) 5, 131, 143, 199
Bsp120I GGGCCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 2 cut(s) 252, 436
BspACI CCGC 2 cut(s) 6, 412
BspANI GGCC 4 cut(s) 5, 131, 143, 199
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 131, 132
BspPI GGATC 1 cut(s) 431
BsrI ACTGG 4 cut(s) 141, 186, 210, 497
BssECI CCNNGG 2 cut(s) 276, 440
BssMI GATC 2 cut(s) 252, 436
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 148, 346
Bst6I CTCTTC 3 cut(s) 31, 111, 230
BstACI GRCGYC 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 2 cut(s) 255, 439
BstMAI GTCTC 2 cut(s) 16, 106
BstMBI GATC 2 cut(s) 252, 436
BstNI CCWGG 2 cut(s) 148, 346
BstSCI CCNGG 2 cut(s) 146, 344
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 4 cut(s) 5, 131, 143, 199
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 134, 203
Cfr13I GGNCC 3 cut(s) 129, 130, 198
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 241
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 314
DpnI GATC 2 cut(s) 254, 438
DpnII GATC 2 cut(s) 252, 436
DraIII CACNNNGTG 1 cut(s) 98
EaeI YGGCCR 2 cut(s) 3, 141
Eam1104I CTCTTC 3 cut(s) 31, 111, 230
EarI CTCTTC 3 cut(s) 31, 111, 230
Eco130I CCWWGG 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 133
Eco72I CACGTG 1 cut(s) 98
EcoO109I RGGNCCY 2 cut(s) 129, 130
EcoRII CCWGG 2 cut(s) 146, 344
EcoT14I CCWWGG 1 cut(s) 440
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 440
FaiI YATR 3 cut(s) 191, 211, 517
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 1 cut(s) 509
Fnu4HI GCNGC 2 cut(s) 6, 399
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 6, 399
FspBI CTAG 1 cut(s) 390
GluI GCNGC 2 cut(s) 6, 399
HaeIII GGCC 4 cut(s) 5, 131, 143, 199
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 152
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 455
HphI GGTGA 2 cut(s) 42, 57
Hpy188I TCNGA 4 cut(s) 252, 277, 302, 315
Hpy188III TCNNGA 1 cut(s) 358
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 3 cut(s) 44, 92, 177
HpyCH4IV ACGT 2 cut(s) 97, 246
HpyCH4V TGCA 3 cut(s) 262, 331, 339
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 97, 246
Hsp92I GRCGYC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 252, 436
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 56
MaeI CTAG 1 cut(s) 390
MaeII ACGT 2 cut(s) 97, 246
MalI GATC 2 cut(s) 254, 438
MboI GATC 2 cut(s) 252, 436
MboII GAAGA 8 cut(s) 18, 98, 162, 217, 220, 346, 385, 494
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 8
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 2 cut(s) 148, 346
MvaI CCWGG 2 cut(s) 148, 346
NdeII GATC 2 cut(s) 252, 436
NlaIV GGNNCC 2 cut(s) 131, 132
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 7, 400
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 98
Psp1406I AACGTT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 146, 344
PspCI CACGTG 1 cut(s) 98
PspGI CCWGG 2 cut(s) 146, 344
PspN4I GGNNCC 2 cut(s) 131, 132
PspOMI GGGCCC 1 cut(s) 129
PspPI GGNCC 3 cut(s) 129, 130, 198
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 2 cut(s) 6, 399
Sau3AI GATC 2 cut(s) 252, 436
Sau96I GGNCC 3 cut(s) 129, 130, 198
ScrFI CCNGG 2 cut(s) 148, 346
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 56
SsiI CCGC 2 cut(s) 6, 412
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 146, 344
StyI CCWWGG 1 cut(s) 440
TaiI ACGT 2 cut(s) 100, 249
TaqI TCGA 1 cut(s) 357
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 2 cut(s) 141, 210
TseI GCWGC 1 cut(s) 398
TspRI CASTG 2 cut(s) 141, 210
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.