Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002783

Physical Location & Seq

Genomic Coordinates Forward (+)

57789303 .. 57791100

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCTGCCACCACCACCACCACCACAACAAGAGCTCACTCTTCCGCCACGTCTCGGCCGGCTTCAACGGCCAGGTGACGGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCAACCGGTTCAGGAGGGAGGTCATCAGGGCCGGCGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTCGAGAACGACCAGGACAAGAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCAAGAAGGAACAAGAACAACCCCCAAAGGTGGTGGTCTCCACAATCAAGATATCGAAATCAGTTCAAACAGCAAAAACCTGAGAAGAAGGACAATGAACCCAAGAGGAATGAGGACAGTGACAATGATGATAACTGGGACTTCTATGAAGTAGACCTTCCTTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.79

Weight (kDa)

10.21

Isoelectric Point (pI)

83.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27160 AT3G27160
fragaria_vesca	FvH4_5g07520 FvH4_6g53290
malus_domestica	MD09G1012000.v1.1 MD17G1012600.v1.1
prunus_persica	Prupe.3G305100_v2.0.a1 Prupe.5G156900_v2.0.a1
pyrus_communis	pycom17g01010
rosa_chinensis	RchiOBHm_Chr2g0088911 RchiOBHm_Chr2g0088961 RchiOBHm_Chr2g0089001 RchiOBHm_Chr2g0175441 RchiOBHm_Chr7g0191151
rosa_laevigata	RLG00000004474 RLG00000022327 RLG00000023458
rosa_multiflora	Rmu_co8428859.1_g000001 Rmu_sc0003512.1_g000011 Rmu_sc0007343.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077340 Rroxscaffold_3G00264000
rosa_rugosa	Rorug02G0584200 Rorug06G0509000 Rorug06G0509100
rosa_samantha	Rh1AG145100 Rh1CG136600 Rh1DG151700 Rh2AG664200 Rh2BG674900 Rh2CG041600 Rh2CG638100 Rh2DG688900 Rh7AG116400 Rh7CG121300 Rh7DG119600
rosa_wichuraiana	Rw2G003240 Rw2G054430 Rw3G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	97, 110
AcyI	GRCGYC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	95, 119, 324
AgeI	ACCGGT	1 cut(s)	157
AgsI	TTSAA	2 cut(s)	107, 361
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	112, 228
AluBI	AGCT	3 cut(s)	14, 25, 76
AluI	AGCT	3 cut(s)	14, 25, 76
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	98, 336
AoxI	GGCC	3 cut(s)	97, 110, 181
ApeKI	GCWGC	4 cut(s)	5, 8, 11, 293
AsiGI	ACCGGT	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	2 cut(s)	122, 181
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	23, 280
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	114, 230
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	98, 336
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	4 cut(s)	6, 9, 12, 294
BlsI	GCNGC	4 cut(s)	7, 10, 13, 295
Bme1390I	CCNGG	3 cut(s)	114, 195, 230
Bme18I	GGWCC	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	122, 181
BmiI	GGNNCC	2 cut(s)	150, 253
BmrFI	CCNGG	3 cut(s)	114, 195, 230
BmrI	ACTGGG	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 119, 324
Bse118I	RCCGGY	3 cut(s)	99, 157, 183
Bse1I	ACTGG	1 cut(s)	434
BseBI	CCWGG	2 cut(s)	114, 230
BseLI	CCNNNNNNNGG	3 cut(s)	95, 119, 324
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	6 cut(s)	17, 22, 29, 141, 156, 224
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	23, 280
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	99, 112, 183
BshNI	GGYRCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	157
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	5 cut(s)	100, 138, 158, 184, 194
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	3 cut(s)	95, 119, 324
BsmAI	GTCTC	2 cut(s)	98, 336
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	99, 112, 183
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	3 cut(s)	99, 112, 183
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	150, 253
BspMAI	CTGCAG	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	336
BsrFI	RCCGGY	3 cut(s)	99, 157, 183
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	3 cut(s)	99, 157, 183
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	114, 230
Bst4CI	ACNGT	2 cut(s)	122, 413
Bst6I	CTCTTC	4 cut(s)	87, 201, 236, 269
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	101, 185, 291
BstDEI	CTNAG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	98, 336
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 109, 290
BstNI	CCWGG	2 cut(s)	114, 230
BstSCI	CCNGG	3 cut(s)	112, 193, 228
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	23, 280
BstZI	CGGCCG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	99, 112, 183
BtrI	CACGTC	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	101, 185, 291
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	3 cut(s)	99, 157, 183
Cfr13I	GGNCC	2 cut(s)	122, 181
CspAI	ACCGGT	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	97, 110
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	87, 201, 236, 269
EarI	CTCTTC	4 cut(s)	87, 201, 236, 269
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	76
EclXI	CGGCCG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	122
Eco52I	CGGCCG	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	112, 228
EcoRV	GATATC	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	98
FaiI	YATR	2 cut(s)	441, 459
FalI	AAGNNNNNCTT	1 cut(s)	435
FaqI	GGGAC	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 294
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 294
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	4 cut(s)	6, 9, 12, 294
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	99, 112, 183
HapII	CCGG	5 cut(s)	100, 138, 158, 184, 194
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HpaII	CCGG	5 cut(s)	100, 138, 158, 184, 194
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188III	TCNNGA	3 cut(s)	164, 220, 342
Hpy8I	GTNNAC	1 cut(s)	448
HpyAV	CCTTC	5 cut(s)	53, 240, 294, 376, 461
HpyCH4III	ACNGT	2 cut(s)	122, 413
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	11, 202, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 109, 290
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	1 cut(s)	252
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
KroI	GCCGGC	2 cut(s)	99, 183
KroNI	GCCGGC	2 cut(s)	101, 185
LmnI	GCTCC	2 cut(s)	30, 154
Lsp1109I	GCAGC	2 cut(s)	23, 280
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	116, 413
MboII	GAAGA	7 cut(s)	74, 218, 250, 253, 283, 286, 391
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	460
Mly113I	GGCGCC	1 cut(s)	252
MroNI	GCCGGC	2 cut(s)	99, 183
MspI	CCGG	5 cut(s)	100, 138, 158, 184, 194
MspR9I	CCNGG	3 cut(s)	114, 195, 230
MvaI	CCWGG	2 cut(s)	114, 230
MwoI	GCNNNNNNNGC	3 cut(s)	11, 109, 290
NaeI	GCCGGC	2 cut(s)	101, 185
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	195
NgoMIV	GCCGGC	2 cut(s)	99, 183
NlaIV	GGNNCC	2 cut(s)	150, 253
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	116, 413
PdiI	GCCGGC	2 cut(s)	101, 185
PfoI	TCCNGGA	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	7, 10, 13, 295
PluTI	GGCGCC	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	112, 228
PspGI	CCWGG	2 cut(s)	112, 228
PspN4I	GGNNCC	2 cut(s)	150, 253
PspPI	GGNCC	2 cut(s)	122, 181
PstI	CTGCAG	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	78
SatI	GCNGC	4 cut(s)	6, 9, 12, 294
Sau96I	GGNCC	2 cut(s)	122, 181
ScrFI	CCNGG	3 cut(s)	114, 195, 230
SduI	GDGCHC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	122
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	1 cut(s)	86
SspDI	GGCGCC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	112, 193, 228
TaaI	ACNGT	2 cut(s)	122, 413
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	219, 349
TasI	AATT	1 cut(s)	460
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	116, 413
TseI	GCWGC	4 cut(s)	5, 8, 11, 293
Tsp45I	GTSAC	2 cut(s)	116, 413
TspDTI	ATGAA	2 cut(s)	405, 456
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.