Rorug02G0584200

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002783
Physical Location & Seq
Reverse (-)
70706515 .. 70707661
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0584200.1

Sequence Viewer

Length: 732 bp
ATGGTTGAGGTAATTGCTTTATGCCAACCCTTGCTTATTCTTGGTACTGGTATGCCTTTTCGCCCAGAAAAATTGAAGGTGAAGCTGAAGAAGGGCAGACGGCGCCACTATGCAAAAGCGGTATTGAACTCGGATCATAAGAAGCCTTTAACCGTGAACCTCAGTTCCACTATTGATGCACCTCTTTATGAGTCCCCTGAGGTTTCATTTGATCAATATTTGGAGGATGAACAAAGGGTTATTAAAGCACTTTTTCCAGACATTGAGGACCAGCAACTTAGCAAGAAAGAGTGGAGGATTCAAATGCCAACCATGCAAGTCTTGTTCCTGTCTATCTACTTTGCAATGTACATTAAGTTAAGATACAAATCCATGGGGAAAGACTATCCTCCTCATGTTCCTCATCACATTCCCAAAATCATTGAGCTTGAAATTACAAGATGGGAACTTGGGGGGATCCCTGAGGAGTACCAGCCGCTTGACTTGAGCCTCTCCCTCAAAGGAACCATATATCCTGATAGAAAGGAAGGAACAAAAAGCAGGCTTAGAGGTCAGGTTGACATAAATATGAGCTTTATTGTATCACATCTGCTTGGTTGGATTCCTCATACTGTCGTGCAGAGCCTTGCAGAAGCGCTGGTTAAGAAAGCGATGGCGGATTCGACATCAAATTCCAGATTGGTAGAAGACTATGATGAATTCAAGACGGAGAAACTCAAGAATGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

243

Amino Acids

28.06

Weight (kDa)

8.92

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 70 - 234 3.4e-22 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AciI CCGC 3 cut(s) 119, 476, 656
AclWI GGATC 3 cut(s) 141, 451, 464
AcsI RAATTY 2 cut(s) 670, 698
AcuI CTGAAG 1 cut(s) 107
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 3 cut(s) 46, 350, 470
AfeI AGCGCT 1 cut(s) 636
AgsI TTSAA 5 cut(s) 76, 127, 302, 431, 703
AloI GAACNNNNNNTCC 4 cut(s) 149, 181, 496, 528
AluBI AGCT 3 cut(s) 85, 427, 573
AluI AGCT 3 cut(s) 85, 427, 573
AlwI GGATC 3 cut(s) 141, 451, 464
Aor51HI AGCGCT 1 cut(s) 636
ApoI RAATTY 2 cut(s) 670, 698
AspLEI GCGC 2 cut(s) 105, 637
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 2 cut(s) 198, 462
BamHI GGATCC 1 cut(s) 456
BanI GGYRCC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 693
BccI CCATC 2 cut(s) 435, 646
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 211
BfoI RGCGCY 2 cut(s) 106, 638
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 104, 458, 505
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 505, 701
BsaBI GATNNNNATC 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 372
Bse1I ACTGG 1 cut(s) 52
Bse21I CCTNAGG 2 cut(s) 198, 462
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 367
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 175, 189, 453
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 381, 479
BsgI GTGCAG 1 cut(s) 638
BshNI GGYRCC 1 cut(s) 102
BslFI GGGAC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 178
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 133, 211, 456
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 3 cut(s) 119, 476, 656
BspCNI CTCAG 3 cut(s) 174, 190, 454
BspLI GGNNCC 3 cut(s) 104, 458, 505
BspPI GGATC 3 cut(s) 141, 451, 464
BspT107I GGYRCC 1 cut(s) 102
BsrDI GCAATG 1 cut(s) 351
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 3 cut(s) 133, 211, 456
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 154, 613
BstACI GRCGYC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 542
BstDEI CTNAG 5 cut(s) 161, 198, 278, 462, 545
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 232
BstH2I RGCGCY 2 cut(s) 106, 638
BstHHI GCGC 2 cut(s) 105, 637
BstKTI GATC 3 cut(s) 136, 214, 459
BstMBI GATC 3 cut(s) 133, 211, 456
BstMWI GCNNNNNNNGC 2 cut(s) 102, 313
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
Bsu36I CCTNAGG 2 cut(s) 198, 462
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 665
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 542
CfoI GCGC 2 cut(s) 105, 637
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 45, 349, 469
CviAII CATG 3 cut(s) 313, 373, 395
CviJI RGCY 8 cut(s) 85, 145, 427, 475, 489, 544, 573, 624
CviKI_1 RGCY 8 cut(s) 85, 145, 427, 475, 489, 544, 573, 624
CviQI GTAC 3 cut(s) 45, 349, 469
DdeI CTNAG 5 cut(s) 161, 198, 278, 462, 545
DinI GGCGCC 1 cut(s) 104
DpnI GATC 3 cut(s) 135, 213, 458
DpnII GATC 3 cut(s) 133, 211, 456
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 268
Eco47III AGCGCT 1 cut(s) 636
Eco57I CTGAAG 1 cut(s) 107
Eco81I CCTNAGG 2 cut(s) 198, 462
EcoRI GAATTC 1 cut(s) 698
EcoT14I CCWWGG 1 cut(s) 372
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 3 cut(s) 316, 376, 398
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 312, 372, 394
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 476
GlaI GCGC 2 cut(s) 104, 636
GluI GCNGC 1 cut(s) 476
HaeII RGCGCY 2 cut(s) 106, 638
HhaI GCGC 2 cut(s) 105, 637
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 3 cut(s) 316, 376, 398
Hin6I GCGC 2 cut(s) 103, 635
HinP1I GCGC 2 cut(s) 103, 635
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 4 cut(s) 191, 298, 601, 659
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 2 cut(s) 157, 559
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 5 cut(s) 257, 515, 675, 703, 718
Hpy8I GTNNAC 2 cut(s) 157, 559
HpyAV CCTTC 3 cut(s) 70, 85, 521
HpyCH4III ACNGT 2 cut(s) 154, 613
HpyCH4V TGCA 6 cut(s) 113, 179, 316, 344, 619, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 313
HpyF3I CTNAG 5 cut(s) 161, 198, 278, 462, 545
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 3 cut(s) 316, 376, 398
HspAI GCGC 2 cut(s) 103, 635
KasI GGCGCC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 133, 211, 456
LweI GCATC 1 cut(s) 166
MalI GATC 3 cut(s) 135, 213, 458
MboI GATC 3 cut(s) 133, 211, 456
MboII GAAGA 2 cut(s) 100, 698
MflI RGATCY 1 cut(s) 456
MluCI AATT 5 cut(s) 12, 71, 432, 670, 698
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 5 cut(s) 149, 243, 354, 359, 642
MslI CAYNNNNRTG 1 cut(s) 566
MwoI GCNNNNNNNGC 2 cut(s) 102, 313
NarI GGCGCC 1 cut(s) 103
NcoI CCATGG 1 cut(s) 372
NdeII GATC 3 cut(s) 133, 211, 456
NlaIII CATG 3 cut(s) 316, 376, 398
NlaIV GGNNCC 3 cut(s) 104, 458, 505
PfeI GAWTC 3 cut(s) 298, 601, 659
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 1 cut(s) 199
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 104, 458, 505
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 3 cut(s) 46, 350, 470
RsaNI GTAC 3 cut(s) 45, 349, 469
RseI CAYNNNNRTG 1 cut(s) 566
SaqAI TTAA 5 cut(s) 149, 243, 354, 359, 642
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 3 cut(s) 133, 211, 456
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 200
SfaNI GCATC 1 cut(s) 166
SfoI GGCGCC 1 cut(s) 104
SinI GGWCC 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 566
SmlI CTYRAG 2 cut(s) 484, 716
SmoI CTYRAG 2 cut(s) 484, 716
Sse9I AATT 5 cut(s) 12, 71, 432, 670, 698
SsiI CCGC 3 cut(s) 119, 476, 656
SspDI GGCGCC 1 cut(s) 102
SspI AATATT 1 cut(s) 218
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 154, 613
TaqI TCGA 1 cut(s) 662
TasI AATT 5 cut(s) 12, 71, 432, 670, 698
TatI WGTACW 1 cut(s) 348
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 3 cut(s) 298, 601, 659
Tru1I TTAA 5 cut(s) 149, 243, 354, 359, 642
Tru9I TTAA 5 cut(s) 149, 243, 354, 359, 642
TspDTI ATGAA 3 cut(s) 195, 243, 711
TspGWI ACGGA 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 2 cut(s) 670, 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.