Rh2CG041600

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002783
Physical Location & Seq
Forward (+)
3314839 .. 3315021
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG041600.1

Sequence Viewer

Length: 183 bp
ATGAACGCCTCTCTGGCTTATGCCAACACTCTCTTCTTCAAGTCGGCTTACAATGGCCAAGTCATCGTCGACGAGGGCGAGTCCGAGGAGCGCTTGCTCAACCGGTTCCGGCGAGAGGTGATGAGAGCTGGCGTCATCCAGGAGGTTAAGCGGAGGAGGTATTTCCAGAACACACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

60

Amino Acids

7.12

Weight (kDa)

9.39

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 20 - 56 1.3e-11 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 69
AciI CCGC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 132
AfeI AGCGCT 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 115
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 138
AjuI GAANNNNNNNTTGG 2 cut(s) 17, 49
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 92
AoxI GGCC 1 cut(s) 55
AsiGI ACCGGT 1 cut(s) 102
AspLEI GCGC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 130
BalI TGGCCA 1 cut(s) 57
BciT130I CCWGG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 94
BglI GCCNNNNNGGC 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 107
BmrFI CCNGG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 1 cut(s) 102
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 115
BseRI GAGGAG 2 cut(s) 101, 169
BshFI GGCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 102
BsiSI CCGG 2 cut(s) 103, 109
BslI CCNNNNNNNGG 1 cut(s) 115
BsnI GGCC 1 cut(s) 57
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 84
BssNI GRCGYC 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 95, 130
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 95, 130
CfoI GCGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 102
CseI GACGC 1 cut(s) 121
CspAI ACCGGT 1 cut(s) 102
CviJI RGCY 4 cut(s) 17, 47, 57, 128
CviKI_1 RGCY 4 cut(s) 17, 47, 57, 128
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco47III AGCGCT 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 138
FaiI YATR 1 cut(s) 21
FblI GTMKAC 1 cut(s) 69
FokI GGATG 1 cut(s) 122
GlaI GCGC 1 cut(s) 92
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 103, 109
HgaI GACGC 1 cut(s) 121
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 80
HpaII CCGG 2 cut(s) 103, 109
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 71, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 114, 116, 122, 125, 152, 179
MboII GAAGA 2 cut(s) 25, 28
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 7 cut(s) 19, 67, 79, 109, 136, 147, 150
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 103, 109
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfoI TCCNGGA 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 102
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 107
SalI GTCGAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 147
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 140
SetI ASST 4 cut(s) 120, 130, 147, 161
SgrDI CGTCGACG 1 cut(s) 68
SsiI CCGC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 138
TaqI TCGA 1 cut(s) 69
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.