Rh1CG136600

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002783
Physical Location & Seq
Reverse (-)
29981060 .. 29982895
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG136600.1

Sequence Viewer

Length: 330 bp
ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCAGCCACCACCACCACCACAACAAGAGTTCACTCTTCCGCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTCGTTGCAAGCTCGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGCCCAGGTGACCGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCAACCGGTTCAGGAGGGAGGTCATCAGGGCCGGCGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

10.0

Isoelectric Point (pI)

82.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 74 - 108 4.5e-09 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 149
AcoI YGGCCR 2 cut(s) 174, 204
AcuI CTGAAG 2 cut(s) 29, 181
AcvI CACGTG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 4 cut(s) 14, 25, 135, 201
AluI AGCT 4 cut(s) 14, 25, 135, 201
Alw21I GWGCWC 1 cut(s) 192
AoxI GGCC 4 cut(s) 138, 174, 204, 288
ApeKI GCWGC 3 cut(s) 5, 8, 11
AsiGI ACCGGT 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 139, 288
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 176
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 124, 151
BciT130I CCWGG 1 cut(s) 221
BcnI CCSGG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 3 cut(s) 6, 9, 12
BlsI GCNGC 3 cut(s) 7, 10, 13
Bme1390I CCNGG 2 cut(s) 221, 302
BmgT120I GGNCC 2 cut(s) 139, 288
BmiI GGNNCC 2 cut(s) 141, 257
BmrFI CCNGG 2 cut(s) 221, 302
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 3 cut(s) 206, 264, 290
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 148
BseRI GAGGAG 5 cut(s) 17, 22, 29, 248, 263
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 1 cut(s) 23
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 140, 176, 206, 290
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 207, 245, 265, 291, 301
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 4 cut(s) 140, 176, 206, 290
Bsp1286I GDGCHC 1 cut(s) 192
BspACI CCGC 2 cut(s) 83, 149
BspANI GGCC 4 cut(s) 140, 176, 206, 290
BspLI GGNNCC 2 cut(s) 141, 257
BspMAI CTGCAG 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 197
BsrFI RCCGGY 3 cut(s) 206, 264, 290
BssAI RCCGGY 3 cut(s) 206, 264, 290
BssECI CCNNGG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 229
Bst6I CTCTTC 3 cut(s) 84, 197, 308
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 4 cut(s) 133, 174, 208, 292
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 116
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 4 cut(s) 11, 137, 146, 207
BstNI CCWGG 1 cut(s) 221
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 219, 300
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 23
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 4 cut(s) 140, 176, 206, 290
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 4 cut(s) 133, 174, 208, 292
Cfr10I RCCGGY 3 cut(s) 206, 264, 290
Cfr13I GGNCC 2 cut(s) 139, 288
CspAI ACCGGT 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 174, 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 84, 197, 308
EarI CTCTTC 3 cut(s) 84, 197, 308
EciI GGCGGA 2 cut(s) 72, 164
EclXI CGGCCG 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 204
Eco57I CTGAAG 2 cut(s) 29, 181
Eco72I CACGTG 1 cut(s) 89
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 219
FaqI GGGAC 1 cut(s) 77
Fnu4HI GCNGC 3 cut(s) 6, 9, 12
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 6, 9, 12
GluI GCNGC 3 cut(s) 6, 9, 12
HaeIII GGCC 4 cut(s) 140, 176, 206, 290
HapII CCGG 5 cut(s) 207, 245, 265, 291, 301
HpaII CCGG 5 cut(s) 207, 245, 265, 291, 301
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 75
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4IV ACGT 2 cut(s) 88, 186
HpyCH4V TGCA 3 cut(s) 11, 131, 309
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 137, 146, 207
HpySE526I ACGT 2 cut(s) 88, 186
KroI GCCGGC 2 cut(s) 206, 290
KroNI GCCGGC 2 cut(s) 208, 292
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 30, 261
Lsp1109I GCAGC 1 cut(s) 23
MaeII ACGT 2 cut(s) 88, 186
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 4 cut(s) 71, 184, 187, 325
MhlI GDGCHC 1 cut(s) 192
MlsI TGGCCA 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 176
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 206, 290
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspI CCGG 5 cut(s) 207, 245, 265, 291, 301
MspR9I CCNGG 2 cut(s) 221, 302
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 11, 137, 146, 207
NaeI GCCGGC 2 cut(s) 208, 292
NciI CCSGG 1 cut(s) 302
NgoMIV GCCGGC 2 cut(s) 206, 290
NlaIV GGNNCC 2 cut(s) 141, 257
NmeAIII GCCGAG 2 cut(s) 116, 182
NmuCI GTSAC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 2 cut(s) 208, 292
PfoI TCCNGGA 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 3 cut(s) 7, 10, 13
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 219
PspCI CACGTG 1 cut(s) 89
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 141, 257
PspPI GGNCC 2 cut(s) 139, 288
PstI CTGCAG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 3 cut(s) 6, 9, 12
Sau96I GGNCC 2 cut(s) 139, 288
ScrFI CCNGG 2 cut(s) 221, 302
SduI GDGCHC 1 cut(s) 192
SetI ASST 9 cut(s) 16, 27, 91, 137, 189, 203, 225, 282, 323
SfcI CTRYAG 1 cut(s) 9
SsiI CCGC 2 cut(s) 83, 149
StyD4I CCNGG 2 cut(s) 219, 300
TaaI ACNGT 1 cut(s) 229
TaiI ACGT 2 cut(s) 91, 189
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 5, 8, 11
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.