Rh7DG119600

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002783
Physical Location & Seq
Reverse (-)
10131174 .. 10133456
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG119600.1

Sequence Viewer

Length: 576 bp
ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCTGCCACCACCACCACAACAACAAGAGCTCACTCTTCCGCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTCGTTGCCAGCTGGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGGCCAGGTGTTGGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCTGCCTCCTCAACCGGTTCAGGAGGGAGGTCATCAGGGCCGGCGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGAAGGAACAAGAACAACCCCCAAAGGTCTCCACAATCAAGATATCGAAATCAGTTCAAACAGCAAAAACCTGAGAAGAAGGACAATGAACCCAAGAGGAATGAGGACGGTGACAATGATGATAACTGGGACTTCTATGAAGTAGACCTTCCTTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

191

Amino Acids

22.07

Weight (kDa)

10.15

Isoelectric Point (pI)

75.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 74 - 121 2.8e-09 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 368
AccB7I CCANNNNNTGG 1 cut(s) 226
AccI GTMKAC 1 cut(s) 558
AciI CCGC 2 cut(s) 83, 149
AcoI YGGCCR 3 cut(s) 174, 204, 217
AcuI CTGAAG 1 cut(s) 181
AcvI CACGTG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 148, 226
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 273
AgsI TTSAA 2 cut(s) 214, 472
AjnI CCWGG 2 cut(s) 219, 345
AluBI AGCT 5 cut(s) 14, 25, 73, 135, 201
AluI AGCT 5 cut(s) 14, 25, 73, 135, 201
Alw21I GWGCWC 2 cut(s) 75, 192
Alw26I GTCTC 1 cut(s) 447
AoxI GGCC 5 cut(s) 138, 174, 204, 217, 297
ApaI GGGCCC 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 5, 8, 11, 410
AsiGI ACCGGT 1 cut(s) 273
AspLEI GCGC 1 cut(s) 371
AspS9I GGNCC 4 cut(s) 138, 139, 229, 297
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 536
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 368
BanII GRGCYC 2 cut(s) 75, 142
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 75, 192
BbvI GCAGC 2 cut(s) 23, 397
BccI CCATC 3 cut(s) 124, 151, 380
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 2 cut(s) 221, 347
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 2 cut(s) 402, 414
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 372
BglI GCCNNNNNGGC 2 cut(s) 137, 146
BisI GCNGC 4 cut(s) 6, 9, 12, 411
BlsI GCNGC 4 cut(s) 7, 10, 13, 412
Bme1390I CCNGG 3 cut(s) 221, 311, 347
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 4 cut(s) 138, 139, 229, 297
BmiI GGNNCC 4 cut(s) 140, 141, 257, 370
BmrFI CCNGG 3 cut(s) 221, 311, 347
BmrI ACTGGG 1 cut(s) 550
BmuI ACTGGG 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 311
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 447
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 226
Bse118I RCCGGY 3 cut(s) 206, 273, 299
Bse1I ACTGG 1 cut(s) 545
BseBI CCWGG 2 cut(s) 221, 347
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 148, 226
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 7 cut(s) 17, 22, 29, 248, 257, 263, 340
BseSI GKGCMC 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 23, 397
BseYI CCCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 140, 176, 206, 219, 299
BshNI GGYRCC 1 cut(s) 368
BshTI ACCGGT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 75, 192
BsiSI CCGG 5 cut(s) 207, 245, 274, 300, 310
BslFI GGGAC 2 cut(s) 77, 557
BslI CCNNNNNNNGG 2 cut(s) 148, 226
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 2 cut(s) 77, 557
BsnI GGCC 5 cut(s) 140, 176, 206, 219, 299
Bso31I GGTCTC 1 cut(s) 447
Bsp120I GGGCCC 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 75, 142, 192
BspACI CCGC 2 cut(s) 83, 149
BspANI GGCC 5 cut(s) 140, 176, 206, 219, 299
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 140, 141, 257, 370
BspMAI CTGCAG 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 447
BsrFI RCCGGY 3 cut(s) 206, 273, 299
BsrI ACTGG 1 cut(s) 545
BssAI RCCGGY 3 cut(s) 206, 273, 299
BssNI GRCGYC 1 cut(s) 369
Bst2UI CCWGG 2 cut(s) 221, 347
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 5 cut(s) 84, 197, 317, 353, 386
BstACI GRCGYC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 5 cut(s) 133, 174, 208, 301, 408
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 1 cut(s) 371
BstMAI GTCTC 1 cut(s) 447
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 407
BstNI CCWGG 2 cut(s) 221, 347
BstSCI CCNGG 3 cut(s) 219, 309, 345
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 23, 397
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 5 cut(s) 140, 176, 206, 219, 299
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 5 cut(s) 133, 174, 208, 301, 408
CfoI GCGC 1 cut(s) 371
Cfr10I RCCGGY 3 cut(s) 206, 273, 299
Cfr13I GGNCC 4 cut(s) 138, 139, 229, 297
CspAI ACCGGT 1 cut(s) 273
DdeI CTNAG 1 cut(s) 486
DinI GGCGCC 1 cut(s) 370
EaeI YGGCCR 3 cut(s) 174, 204, 217
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 84, 197, 317, 353, 386
EarI CTCTTC 5 cut(s) 84, 197, 317, 353, 386
EciI GGCGGA 2 cut(s) 72, 164
Ecl136II GAGCTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 75, 142
Eco31I GGTCTC 1 cut(s) 447
Eco32I GATATC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 219, 345
EcoRV GATATC 1 cut(s) 458
EcoT38I GRGCYC 2 cut(s) 75, 142
EgeI GGCGCC 1 cut(s) 370
EheI GGCGCC 1 cut(s) 370
FaiI YATR 2 cut(s) 552, 570
FalI AAGNNNNNCTT 1 cut(s) 546
FaqI GGGAC 2 cut(s) 77, 557
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 411
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 2 cut(s) 75, 142
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 411
FspBI CTAG 2 cut(s) 402, 414
GlaI GCGC 1 cut(s) 370
GluI GCNGC 4 cut(s) 6, 9, 12, 411
GsaI CCCAGC 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 5 cut(s) 140, 176, 206, 219, 299
HapII CCGG 5 cut(s) 207, 245, 274, 300, 310
HhaI GCGC 1 cut(s) 371
Hin1I GRCGYC 1 cut(s) 369
Hin6I GCGC 1 cut(s) 369
HinP1I GCGC 1 cut(s) 369
HpaII CCGG 5 cut(s) 207, 245, 274, 300, 310
HphI GGTGA 1 cut(s) 536
Hpy166II GTNNAC 1 cut(s) 559
Hpy188III TCNNGA 3 cut(s) 280, 337, 453
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 53, 357, 411, 487, 572
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 88, 186
HpyCH4V TGCA 2 cut(s) 11, 318
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 407
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 2 cut(s) 88, 186
Hsp92I GRCGYC 1 cut(s) 369
HspAI GCGC 1 cut(s) 369
KasI GGCGCC 1 cut(s) 368
KroI GCCGGC 2 cut(s) 206, 299
KroNI GCCGGC 2 cut(s) 208, 301
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 30, 261
Lsp1109I GCAGC 2 cut(s) 23, 397
MaeI CTAG 2 cut(s) 402, 414
MaeII ACGT 2 cut(s) 88, 186
MaeIII GTNAC 1 cut(s) 524
MboII GAAGA 9 cut(s) 71, 184, 187, 334, 367, 370, 400, 403, 502
MhlI GDGCHC 3 cut(s) 75, 142, 192
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 1 cut(s) 571
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 369
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 206, 299
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 5 cut(s) 207, 245, 274, 300, 310
MspR9I CCNGG 3 cut(s) 221, 311, 347
MvaI CCWGG 2 cut(s) 221, 347
MwoI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 407
NaeI GCCGGC 2 cut(s) 208, 301
NarI GGCGCC 1 cut(s) 369
NciI CCSGG 1 cut(s) 311
NgoMIV GCCGGC 2 cut(s) 206, 299
NlaIV GGNNCC 4 cut(s) 140, 141, 257, 370
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 524
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 2 cut(s) 208, 301
PflMI CCANNNNNTGG 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 309
PinAI ACCGGT 1 cut(s) 273
PkrI GCNGC 4 cut(s) 7, 10, 13, 412
PluTI GGCGCC 1 cut(s) 372
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PsiI TTATAA 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 219, 345
PspCI CACGTG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 219, 345
PspN4I GGNNCC 4 cut(s) 140, 141, 257, 370
PspOMI GGGCCC 1 cut(s) 138
PspPI GGNCC 4 cut(s) 138, 139, 229, 297
PstI CTGCAG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 4 cut(s) 6, 9, 12, 411
Sau96I GGNCC 4 cut(s) 138, 139, 229, 297
ScrFI CCNGG 3 cut(s) 221, 311, 347
SduI GDGCHC 3 cut(s) 75, 142, 192
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 370
SinI GGWCC 1 cut(s) 229
Sse9I AATT 1 cut(s) 571
SsiI CCGC 2 cut(s) 83, 149
SspDI GGCGCC 1 cut(s) 368
SspMI CTAG 2 cut(s) 402, 414
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 219, 309, 345
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 91, 189
TaqI TCGA 2 cut(s) 336, 460
TasI AATT 1 cut(s) 571
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 4 cut(s) 5, 8, 11, 410
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 2 cut(s) 516, 567
TspGWI ACGGA 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 558
XspI CTAG 2 cut(s) 402, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.