RchiOBHm_Chr2g0088911

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002783
Physical Location & Seq
Forward (+)
3255951 .. 3256322
372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46421

Sequence Viewer

Length: 372 bp
ATGGCTGCCTCATCCTCTCTCTGCAACTTCCTCTCCTTCCTCACACCCTCAAAGCCCCCATCACAAGCCAAACCCCCACCACCCCATCTCCATCTCTCCCAAACCCAGAAGCCCAGAGACGCCTTCGTCCCTCTAGTCGCCCAACCTGGTCCTTATTTCTCTTCTTCCTCTTCGGAATTGGAGTCCGTCATGAACGCCTCTCTGGCTTATGCCAACACTCTCTTCTTCAAGTCGGCTTACAATGGCCAAGTCATCGTCGACGAGGGCGAGTCCGAGGAGCGCTTGCTCAACCGGTTCCGGCGAGAGGTGATGAGAGCTGGCGTCATCCAGGAGGTTAAGCGGAGGAGGTATTTCCAGAACACACAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

9.25

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 83 - 119 7.7e-11 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccI GTMKAC 1 cut(s) 258
AciI CCGC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 244
AcyI GRCGYC 2 cut(s) 120, 321
AfeI AGCGCT 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 229
AjnI CCWGG 2 cut(s) 145, 327
AjuI GAANNNNNNNTTGG 2 cut(s) 206, 238
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 281
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 5
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 246
BccI CCATC 3 cut(s) 67, 93, 99
BciT130I CCWGG 2 cut(s) 147, 329
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 134
BfoI RGCGCY 1 cut(s) 283
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 147, 329
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 296
BmrFI CCNGG 2 cut(s) 147, 329
BsaHI GRCGYC 2 cut(s) 120, 321
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 291
BseBI CCWGG 2 cut(s) 147, 329
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 11, 324
BseLI CCNNNNNNNGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 290, 358
BshFI GGCC 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 291
BsiSI CCGG 2 cut(s) 292, 298
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 246
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 246
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 291
BssECI CCNNGG 1 cut(s) 273
BssNI GRCGYC 2 cut(s) 120, 321
Bst2UI CCWGG 2 cut(s) 147, 329
Bst6I CTCTTC 3 cut(s) 166, 175, 227
BstACI GRCGYC 2 cut(s) 120, 321
BstC8I GCNNGC 2 cut(s) 284, 319
BstF5I GGATG 2 cut(s) 11, 324
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 147, 329
BstSCI CCNGG 2 cut(s) 145, 327
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 11, 324
Cac8I GCNNGC 2 cut(s) 284, 319
CciI TCATGA 1 cut(s) 189
CfoI GCGC 1 cut(s) 282
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 2 cut(s) 128, 310
CsiI ACCWGGT 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 291
CviAII CATG 1 cut(s) 190
CviJI RGCY 8 cut(s) 5, 55, 68, 112, 206, 236, 246, 317
CviKI_1 RGCY 8 cut(s) 5, 55, 68, 112, 206, 236, 246, 317
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 166, 175, 227
EarI CTCTTC 3 cut(s) 166, 175, 227
Eco47I GGWCC 1 cut(s) 149
Eco47III AGCGCT 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 145, 327
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 191, 210
FaqI GGGAC 1 cut(s) 113
FatI CATG 1 cut(s) 189
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 281
GluI GCNGC 1 cut(s) 6
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 1 cut(s) 246
HapII CCGG 2 cut(s) 292, 298
HgaI GACGC 2 cut(s) 128, 310
HhaI GCGC 1 cut(s) 282
Hin1I GRCGYC 2 cut(s) 120, 321
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 2 cut(s) 182, 269
HpaII CCGG 2 cut(s) 292, 298
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 175, 274
Hpy188III TCNNGA 2 cut(s) 190, 355
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 2 cut(s) 260, 263
HpyAV CCTTC 2 cut(s) 46, 133
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
Hsp92I GRCGYC 2 cut(s) 120, 321
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 277
MabI ACCWGGT 1 cut(s) 145
MaeI CTAG 1 cut(s) 134
MboII GAAGA 5 cut(s) 153, 156, 162, 214, 217
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 1 cut(s) 176
MluNI TGGCCA 1 cut(s) 246
MlyI GAGTC 2 cut(s) 191, 278
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 2 cut(s) 292, 298
MspR9I CCNGG 2 cut(s) 147, 329
MvaI CCWGG 2 cut(s) 147, 329
MwoI GCNNNNNNNGC 1 cut(s) 203
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 296
PagI TCATGA 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 291
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 190, 277
PpsI GAGTC 2 cut(s) 190, 277
Psp6I CCWGG 2 cut(s) 145, 327
PspGI CCWGG 2 cut(s) 145, 327
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 1 cut(s) 149
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 191, 278
ScrFI CCNGG 2 cut(s) 147, 329
SetI ASST 5 cut(s) 148, 309, 319, 336, 350
SexAI ACCWGGT 1 cut(s) 145
SgrDI CGTCGACG 1 cut(s) 257
SinI GGWCC 1 cut(s) 149
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 145, 327
TaqI TCGA 1 cut(s) 258
TasI AATT 1 cut(s) 176
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 1 cut(s) 175
VpaK11BI GGWCC 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.