Rh7AG116400

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002783
Physical Location & Seq
Reverse (-)
9079304 .. 9081653
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG116400.1

Sequence Viewer

Length: 564 bp
ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCTGCCACCACCACCACAACAACAAGAGCTCACTCTTCCGCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTAGTTGCCAGCTGGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGGCCAGGTGTCGGTCCAAGACAACGAGCCGGAGGAGTGGCTCCTCAACCGGTTCAGGAGGGAGGTCATCAGGGCCGGCGTGTTCCGGGAGTGCAAGAAGAGGAGGTTTTTCGAGAACAACCAGGACAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGAAGGAACAAGAACAACCCCCAAAGGTCTCCACAATCAAGATATCGAAATCAGTTCAAACAGCAAAAACCTGAGAAGAAGGACAATGAACCCAAGAGGAATGAGGACGGTGACAGTGATGATAACTGGGACTTCTATGAAGTAGACCTTCCTTATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

187

Amino Acids

21.56

Weight (kDa)

10.19

Isoelectric Point (pI)

76.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S21 PF01165 74 - 118 2e-12 Ribosomal protein S21
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 546
AciI CCGC 2 cut(s) 83, 149
AcoI YGGCCR 3 cut(s) 174, 204, 217
AcuI CTGAAG 1 cut(s) 181
AcvI CACGTG 1 cut(s) 89
AcyI GRCGYC 1 cut(s) 357
AfiI CCNNNNNNNGG 2 cut(s) 148, 226
AflIII ACRYGT 1 cut(s) 88
AgeI ACCGGT 1 cut(s) 264
AgsI TTSAA 2 cut(s) 214, 460
AjnI CCWGG 2 cut(s) 219, 336
AluBI AGCT 5 cut(s) 14, 25, 73, 135, 201
AluI AGCT 5 cut(s) 14, 25, 73, 135, 201
Alw21I GWGCWC 2 cut(s) 75, 192
Alw26I GTCTC 1 cut(s) 435
AoxI GGCC 5 cut(s) 138, 174, 204, 217, 288
ApaI GGGCCC 1 cut(s) 142
ApeKI GCWGC 4 cut(s) 5, 8, 11, 398
AsiGI ACCGGT 1 cut(s) 264
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 138, 139, 229, 288
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 1 cut(s) 524
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 142
BalI TGGCCA 1 cut(s) 176
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 2 cut(s) 75, 142
BbrPI CACGTG 1 cut(s) 89
Bbv12I GWGCWC 2 cut(s) 75, 192
BbvI GCAGC 2 cut(s) 23, 385
BccI CCATC 3 cut(s) 124, 151, 368
BceAI ACGGC 1 cut(s) 232
BciT130I CCWGG 2 cut(s) 221, 338
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 3 cut(s) 125, 390, 402
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 360
BglI GCCNNNNNGGC 2 cut(s) 137, 146
BisI GCNGC 4 cut(s) 6, 9, 12, 399
BlsI GCNGC 4 cut(s) 7, 10, 13, 400
Bme1390I CCNGG 3 cut(s) 221, 302, 338
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 4 cut(s) 138, 139, 229, 288
BmiI GGNNCC 4 cut(s) 140, 141, 257, 358
BmrFI CCNGG 3 cut(s) 221, 302, 338
BmrI ACTGGG 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 435
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 226
Bse118I RCCGGY 3 cut(s) 206, 264, 290
Bse1I ACTGG 1 cut(s) 533
BseBI CCWGG 2 cut(s) 221, 338
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 148, 226
BseMII CTCAG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 6 cut(s) 17, 22, 29, 248, 263, 331
BseSI GKGCMC 1 cut(s) 142
BseX3I CGGCCG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 23, 385
BseYI CCCAGC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 5 cut(s) 140, 176, 206, 219, 290
BshNI GGYRCC 1 cut(s) 356
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 75, 192
BsiSI CCGG 5 cut(s) 207, 245, 265, 291, 301
BslFI GGGAC 2 cut(s) 77, 545
BslI CCNNNNNNNGG 2 cut(s) 148, 226
BsmAI GTCTC 1 cut(s) 435
BsmFI GGGAC 2 cut(s) 77, 545
BsnI GGCC 5 cut(s) 140, 176, 206, 219, 290
Bso31I GGTCTC 1 cut(s) 435
Bsp120I GGGCCC 1 cut(s) 138
Bsp1286I GDGCHC 3 cut(s) 75, 142, 192
BspACI CCGC 2 cut(s) 83, 149
BspANI GGCC 5 cut(s) 140, 176, 206, 219, 290
BspCNI CTCAG 1 cut(s) 466
BspLI GGNNCC 4 cut(s) 140, 141, 257, 358
BspMAI CTGCAG 1 cut(s) 13
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 435
BsrFI RCCGGY 3 cut(s) 206, 264, 290
BsrI ACTGG 1 cut(s) 533
BssAI RCCGGY 3 cut(s) 206, 264, 290
BssNI GRCGYC 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 221, 338
Bst4CI ACNGT 2 cut(s) 512, 518
Bst6I CTCTTC 5 cut(s) 84, 197, 308, 341, 374
BstACI GRCGYC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 5 cut(s) 133, 174, 208, 292, 396
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 435
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 395
BstNI CCWGG 2 cut(s) 221, 338
BstSCI CCNGG 3 cut(s) 219, 300, 336
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 23, 385
BstZI CGGCCG 1 cut(s) 204
BsuRI GGCC 5 cut(s) 140, 176, 206, 219, 290
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 523
Cac8I GCNNGC 5 cut(s) 133, 174, 208, 292, 396
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 3 cut(s) 206, 264, 290
Cfr13I GGNCC 4 cut(s) 138, 139, 229, 288
CspAI ACCGGT 1 cut(s) 264
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 358
EaeI YGGCCR 3 cut(s) 174, 204, 217
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 5 cut(s) 84, 197, 308, 341, 374
EarI CTCTTC 5 cut(s) 84, 197, 308, 341, 374
EciI GGCGGA 2 cut(s) 72, 164
Ecl136II GAGCTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 75, 142
Eco31I GGTCTC 1 cut(s) 435
Eco32I GATATC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 229
Eco52I CGGCCG 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 219, 336
EcoRV GATATC 1 cut(s) 446
EcoT38I GRGCYC 2 cut(s) 75, 142
EgeI GGCGCC 1 cut(s) 358
EheI GGCGCC 1 cut(s) 358
FaiI YATR 2 cut(s) 540, 558
FalI AAGNNNNNCTT 1 cut(s) 534
FaqI GGGAC 2 cut(s) 77, 545
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 399
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 2 cut(s) 75, 142
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 399
FspBI CTAG 3 cut(s) 125, 390, 402
GlaI GCGC 1 cut(s) 358
GluI GCNGC 4 cut(s) 6, 9, 12, 399
GsaI CCCAGC 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 5 cut(s) 140, 176, 206, 219, 290
HapII CCGG 5 cut(s) 207, 245, 265, 291, 301
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 357
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HpaII CCGG 5 cut(s) 207, 245, 265, 291, 301
HphI GGTGA 1 cut(s) 524
Hpy166II GTNNAC 1 cut(s) 547
Hpy188III TCNNGA 3 cut(s) 271, 328, 441
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 53, 345, 399, 475, 560
HpyCH4III ACNGT 2 cut(s) 512, 518
HpyCH4IV ACGT 2 cut(s) 88, 186
HpyCH4V TGCA 2 cut(s) 11, 309
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 395
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 2 cut(s) 88, 186
Hsp92I GRCGYC 1 cut(s) 357
HspAI GCGC 1 cut(s) 357
KasI GGCGCC 1 cut(s) 356
KroI GCCGGC 2 cut(s) 206, 290
KroNI GCCGGC 2 cut(s) 208, 292
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 30, 261
Lsp1109I GCAGC 2 cut(s) 23, 385
MaeI CTAG 3 cut(s) 125, 390, 402
MaeII ACGT 2 cut(s) 88, 186
MaeIII GTNAC 1 cut(s) 512
MboII GAAGA 8 cut(s) 71, 184, 187, 325, 358, 388, 391, 490
MhlI GDGCHC 3 cut(s) 75, 142, 192
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 1 cut(s) 559
MluNI TGGCCA 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 176
MroNI GCCGGC 2 cut(s) 206, 290
MscI TGGCCA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 5 cut(s) 207, 245, 265, 291, 301
MspR9I CCNGG 3 cut(s) 221, 302, 338
MvaI CCWGG 2 cut(s) 221, 338
MwoI GCNNNNNNNGC 6 cut(s) 11, 137, 146, 207, 216, 395
NaeI GCCGGC 2 cut(s) 208, 292
NarI GGCGCC 1 cut(s) 357
NciI CCSGG 1 cut(s) 302
NgoMIV GCCGGC 2 cut(s) 206, 290
NlaIV GGNNCC 4 cut(s) 140, 141, 257, 358
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 512
PciSI GCTCTTC 1 cut(s) 197
PdiI GCCGGC 2 cut(s) 208, 292
PfoI TCCNGGA 1 cut(s) 300
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 4 cut(s) 7, 10, 13, 400
PluTI GGCGCC 1 cut(s) 360
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PsiI TTATAA 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 219, 336
PspCI CACGTG 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 219, 336
PspN4I GGNNCC 4 cut(s) 140, 141, 257, 358
PspOMI GGGCCC 1 cut(s) 138
PspPI GGNCC 4 cut(s) 138, 139, 229, 288
PstI CTGCAG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 135
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 197
SatI GCNGC 4 cut(s) 6, 9, 12, 399
Sau96I GGNCC 4 cut(s) 138, 139, 229, 288
ScrFI CCNGG 3 cut(s) 221, 302, 338
SduI GDGCHC 3 cut(s) 75, 142, 192
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 358
SinI GGWCC 1 cut(s) 229
Sse9I AATT 1 cut(s) 559
SsiI CCGC 2 cut(s) 83, 149
SspDI GGCGCC 1 cut(s) 356
SspMI CTAG 3 cut(s) 125, 390, 402
SstI GAGCTC 1 cut(s) 75
StyD4I CCNGG 3 cut(s) 219, 300, 336
TaaI ACNGT 2 cut(s) 512, 518
TaiI ACGT 2 cut(s) 91, 189
TaqI TCGA 2 cut(s) 327, 448
TaqII GACCGA 1 cut(s) 217
TasI AATT 1 cut(s) 559
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 5, 8, 11, 398
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 504, 555
TspGWI ACGGA 1 cut(s) 156
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 3 cut(s) 125, 390, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.