Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007343.1

Orthogroup ID

OG0002783

Physical Location & Seq

Genomic Coordinates Reverse (-)

5255 .. 5773

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007343.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggctgctgcagctctctccaagctcctctcctccctcctccttctgccaccaccaccacaacaacaagagctcactcttccgccacgtgtccctctccctaaaccctcgccaccatcccctctcgttgccagctgggccccatcggcggaaaatgtagcctttccgtcgctggccaactcaaacgtgctcttcttcagctcggccggcttcaacggccaggtgttggtccaagacaacgagccggaggagtggctcctcaaccggttcaggagggaggtcatcagggccggcgtgttccgggagtgcaagaagaggaggtttttcgagaacaaccaggacaagaagaagagaatgggcgccatctccaagaaaaagaagaagagaaaggctaggcaggctgctagaaggaacaagaacaacccccaaaggtttgatctttctgacttaagattgctttttgatgagtctgatattgcattttgggtctgttttctaatgatgtttatacttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_S21

Protein Analysis

172

Amino Acids

19.71

Weight (kDa)

10.5

Isoelectric Point (pI)

66.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27160 AT3G27160
fragaria_vesca	FvH4_5g07520 FvH4_6g53290
malus_domestica	MD09G1012000.v1.1 MD17G1012600.v1.1
prunus_persica	Prupe.3G305100_v2.0.a1 Prupe.5G156900_v2.0.a1
pyrus_communis	pycom17g01010
rosa_chinensis	RchiOBHm_Chr2g0088911 RchiOBHm_Chr2g0088961 RchiOBHm_Chr2g0089001 RchiOBHm_Chr2g0175441 RchiOBHm_Chr7g0191151
rosa_laevigata	RLG00000004474 RLG00000022327 RLG00000023458
rosa_multiflora	Rmu_co8428859.1_g000001 Rmu_sc0003512.1_g000011 Rmu_sc0007343.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077340 Rroxscaffold_3G00264000
rosa_rugosa	Rorug02G0584200 Rorug06G0509000 Rorug06G0509100
rosa_samantha	Rh1AG145100 Rh1CG136600 Rh1DG151700 Rh2AG664200 Rh2BG674900 Rh2CG041600 Rh2CG638100 Rh2DG688900 Rh7AG116400 Rh7CG121300 Rh7DG119600
rosa_wichuraiana	Rw2G003240 Rw2G054430 Rw3G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	2 cut(s)	83, 149
AcoI	YGGCCR	3 cut(s)	174, 204, 217
AcuI	CTGAAG	1 cut(s)	181
AcvI	CACGTG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	148, 226
AflII	CTTAAG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	88
AgeI	ACCGGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	219, 336
AluBI	AGCT	5 cut(s)	14, 25, 73, 135, 201
AluI	AGCT	5 cut(s)	14, 25, 73, 135, 201
Alw21I	GWGCWC	2 cut(s)	75, 192
AoxI	GGCC	5 cut(s)	138, 174, 204, 217, 288
ApaI	GGGCCC	1 cut(s)	142
ApeKI	GCWGC	4 cut(s)	5, 8, 11, 401
AsiGI	ACCGGT	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	4 cut(s)	138, 139, 229, 288
AsuC2I	CCSGG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	75, 142
BbrPI	CACGTG	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	75, 192
BbvI	GCAGC	2 cut(s)	23, 388
BccI	CCATC	3 cut(s)	124, 151, 371
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	221, 338
BcnI	CCSGG	1 cut(s)	302
BfaI	CTAG	2 cut(s)	393, 405
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	448
BglI	GCCNNNNNGGC	2 cut(s)	137, 146
BisI	GCNGC	4 cut(s)	6, 9, 12, 402
BlsI	GCNGC	4 cut(s)	7, 10, 13, 403
Bme1390I	CCNGG	3 cut(s)	221, 302, 338
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	4 cut(s)	138, 139, 229, 288
BmiI	GGNNCC	4 cut(s)	140, 141, 257, 361
BmrFI	CCNGG	3 cut(s)	221, 302, 338
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 226
Bse118I	RCCGGY	3 cut(s)	206, 264, 290
BseBI	CCWGG	2 cut(s)	221, 338
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	148, 226
BseRI	GAGGAG	6 cut(s)	17, 22, 29, 248, 263, 331
BseSI	GKGCMC	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	23, 388
BseYI	CCCAGC	1 cut(s)	135
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	5 cut(s)	140, 176, 206, 219, 290
BshNI	GGYRCC	1 cut(s)	359
BshTI	ACCGGT	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	75, 192
BsiSI	CCGG	5 cut(s)	207, 245, 265, 291, 301
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	148, 226
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	5 cut(s)	140, 176, 206, 219, 290
Bsp120I	GGGCCC	1 cut(s)	138
Bsp1286I	GDGCHC	3 cut(s)	75, 142, 192
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	83, 149
BspANI	GGCC	5 cut(s)	140, 176, 206, 219, 290
BspLI	GGNNCC	4 cut(s)	140, 141, 257, 361
BspMAI	CTGCAG	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	448
BsrFI	RCCGGY	3 cut(s)	206, 264, 290
BssAI	RCCGGY	3 cut(s)	206, 264, 290
BssMI	GATC	1 cut(s)	436
BssNI	GRCGYC	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	221, 338
Bst6I	CTCTTC	5 cut(s)	84, 197, 308, 344, 377
BstACI	GRCGYC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	448
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	133, 174, 208, 292, 399
BstF5I	GGATG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 137, 146, 207, 216, 398
BstNI	CCWGG	2 cut(s)	221, 338
BstSCI	CCNGG	3 cut(s)	219, 300, 336
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	23, 388
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	5 cut(s)	140, 176, 206, 219, 290
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	5 cut(s)	133, 174, 208, 292, 399
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	3 cut(s)	206, 264, 290
Cfr13I	GGNCC	4 cut(s)	138, 139, 229, 288
CspAI	ACCGGT	1 cut(s)	264
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
EaeI	YGGCCR	3 cut(s)	174, 204, 217
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	5 cut(s)	84, 197, 308, 344, 377
EarI	CTCTTC	5 cut(s)	84, 197, 308, 344, 377
EciI	GGCGGA	2 cut(s)	72, 164
Ecl136II	GAGCTC	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	204
Eco24I	GRGCYC	2 cut(s)	75, 142
Eco47I	GGWCC	1 cut(s)	229
Eco52I	CGGCCG	1 cut(s)	204
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	219, 336
EcoT38I	GRGCYC	2 cut(s)	75, 142
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
FaiI	YATR	1 cut(s)	509
FaqI	GGGAC	1 cut(s)	77
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 402
FokI	GGATG	1 cut(s)	103
FriOI	GRGCYC	2 cut(s)	75, 142
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 402
FspBI	CTAG	2 cut(s)	393, 405
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	4 cut(s)	6, 9, 12, 402
GsaI	CCCAGC	1 cut(s)	139
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	5 cut(s)	140, 176, 206, 219, 290
HapII	CCGG	5 cut(s)	207, 245, 265, 291, 301
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	5 cut(s)	207, 245, 265, 291, 301
Hpy188I	TCNGA	2 cut(s)	445, 472
Hpy188III	TCNNGA	2 cut(s)	271, 328
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	53, 402
HpyCH4IV	ACGT	2 cut(s)	88, 186
HpyCH4V	TGCA	3 cut(s)	11, 309, 479
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 137, 146, 207, 216, 398
HpySE526I	ACGT	2 cut(s)	88, 186
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	1 cut(s)	360
KasI	GGCGCC	1 cut(s)	359
KroI	GCCGGC	2 cut(s)	206, 290
KroNI	GCCGGC	2 cut(s)	208, 292
Kzo9I	GATC	1 cut(s)	436
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	30, 261
Lsp1109I	GCAGC	2 cut(s)	23, 388
MaeI	CTAG	2 cut(s)	393, 405
MaeII	ACGT	2 cut(s)	88, 186
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	8 cut(s)	71, 184, 187, 325, 358, 361, 391, 394
MhlI	GDGCHC	3 cut(s)	75, 142, 192
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	176
MroNI	GCCGGC	2 cut(s)	206, 290
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	2 cut(s)	449, 517
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	448
MspI	CCGG	5 cut(s)	207, 245, 265, 291, 301
MspR9I	CCNGG	3 cut(s)	221, 302, 338
MvaI	CCWGG	2 cut(s)	221, 338
MwoI	GCNNNNNNNGC	6 cut(s)	11, 137, 146, 207, 216, 398
NaeI	GCCGGC	2 cut(s)	208, 292
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	436
NgoMIV	GCCGGC	2 cut(s)	206, 290
NlaIV	GGNNCC	4 cut(s)	140, 141, 257, 361
NmeAIII	GCCGAG	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	197
PdiI	GCCGGC	2 cut(s)	208, 292
PflMI	CCANNNNNTGG	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	300
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	4 cut(s)	7, 10, 13, 403
PleI	GAGTC	1 cut(s)	475
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	475
Ppu21I	YACGTR	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	219, 336
PspCI	CACGTG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	135
PspGI	CCWGG	2 cut(s)	219, 336
PspN4I	GGNNCC	4 cut(s)	140, 141, 257, 361
PspOMI	GGGCCC	1 cut(s)	138
PspPI	GGNCC	4 cut(s)	138, 139, 229, 288
PstI	CTGCAG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	449, 517
SatI	GCNGC	4 cut(s)	6, 9, 12, 402
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	4 cut(s)	138, 139, 229, 288
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	221, 302, 338
SduI	GDGCHC	3 cut(s)	75, 142, 192
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	361
SinI	GGWCC	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SsiI	CCGC	2 cut(s)	83, 149
SspDI	GGCGCC	1 cut(s)	359
SspMI	CTAG	2 cut(s)	393, 405
SstI	GAGCTC	1 cut(s)	75
StyD4I	CCNGG	3 cut(s)	219, 300, 336
TaiI	ACGT	2 cut(s)	91, 189
TaqI	TCGA	1 cut(s)	327
Tru1I	TTAA	2 cut(s)	449, 517
Tru9I	TTAA	2 cut(s)	449, 517
TseI	GCWGC	4 cut(s)	5, 8, 11, 401
TspGWI	ACGGA	1 cut(s)	156
Van91I	CCANNNNNTGG	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	229
XspI	CTAG	2 cut(s)	393, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.