Prupe.3G305100_v2.0.a1

rRNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0002783
Physical Location & Seq
Reverse (-)
26742065 .. 26743372
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G305100.1

Sequence Viewer

Length: 531 bp
ATGGCTGCCTCATCCTCTCTCTGCAACTTGTTCTCCTTCCTCAATCCCTCAAAGCTACCATCACAACCCAAAACCCCACCAACCCAGCTCCCTATGTTACAGACCCAGAAGACCAGAGATGGGGTGGCCCCACTGATGGCTCAAGGGGGTCCCTCTGCATATGGCCCTTCTTCTTCTTCTGTAGAGTCTGTGATATGCCCCTCTCTGGCTTATGCCAACACCCTCTTCTTTAAGTCGGCCTACAATGTGCAAGTTATTGTGGACGACAACGAACCCGAGGAGAGGCTGCTCAACAGGTTCAGGAGAGAGGTCATGAGGGCCGGTGTTATTCAAGAAACTAAGAGGAGGAGGTACTTTGAGAACAAGCAGGACGAGAAGAAGCGCAGGACGCGTGACGCTGCTAAGCGCAACAAAAGAAGCCGGCGTCCCTTTTCAAGACCTTTTCAGCAGAAGCCAGAAGTCCCTGAAACCAAGAAGAGCGATGATGACGGCGATAACTGGGATCTACCTCAAGGAGACATACCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S21

Protein Analysis

177

Amino Acids

20.07

Weight (kDa)

9.72

Isoelectric Point (pI)

77.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 391
AclWI GGATC 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 424
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 4 cut(s) 120, 136, 205, 282
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 2 cut(s) 332, 435
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 55, 88
AluI AGCT 2 cut(s) 55, 88
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 4 cut(s) 126, 163, 237, 318
ApeKI GCWGC 3 cut(s) 5, 286, 398
AspLEI GCGC 2 cut(s) 384, 408
AspS9I GGNCC 4 cut(s) 127, 149, 164, 318
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 273, 385
BccI CCATC 3 cut(s) 67, 113, 130
BceAI ACGGC 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 3 cut(s) 6, 287, 399
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 3 cut(s) 7, 288, 400
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 4 cut(s) 127, 149, 164, 318
BmiI GGNNCC 3 cut(s) 129, 150, 151
BmrI ACTGGG 1 cut(s) 508
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 116
Bpu1102I GCTNAGC 1 cut(s) 402
BpuEI CTTGAG 2 cut(s) 126, 495
BsaHI GRCGYC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 136, 205, 282
Bse118I RCCGGY 2 cut(s) 320, 420
Bse1I ACTGG 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 11
BseLI CCNNNNNNNGG 4 cut(s) 120, 136, 205, 282
BseNI ACTGG 1 cut(s) 503
BseRI GAGGAG 3 cut(s) 293, 358, 361
BseXI GCAGC 2 cut(s) 273, 385
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 4 cut(s) 128, 165, 239, 320
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 2 cut(s) 321, 421
BslFI GGGAC 3 cut(s) 135, 411, 446
BslI CCNNNNNNNGG 4 cut(s) 120, 136, 205, 282
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 3 cut(s) 135, 411, 446
BsnI GGCC 4 cut(s) 128, 165, 239, 320
BsoBI CYCGRG 1 cut(s) 275
Bsp143I GATC 1 cut(s) 502
Bsp1720I GCTNAGC 1 cut(s) 402
BspANI GGCC 4 cut(s) 128, 165, 239, 320
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 129, 150, 151
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 470
BsrFI RCCGGY 2 cut(s) 320, 420
BsrI ACTGG 1 cut(s) 503
BssAI RCCGGY 2 cut(s) 320, 420
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 1 cut(s) 502
BssNI GRCGYC 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 230, 470
BstACI GRCGYC 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 2 cut(s) 339, 402
BstF5I GGATG 1 cut(s) 11
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 384, 408
BstKTI GATC 1 cut(s) 505
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 502
BstMWI GCNNNNNNNGC 1 cut(s) 388
BstSFI CTRYAG 1 cut(s) 180
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 273, 385
BstV2I GAAGAC 1 cut(s) 116
BstX2I RGATCY 1 cut(s) 502
BstYI RGATCY 1 cut(s) 502
BsuRI GGCC 4 cut(s) 128, 165, 239, 320
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 422
CciI TCATGA 1 cut(s) 312
CfoI GCGC 2 cut(s) 384, 408
Cfr10I RCCGGY 2 cut(s) 320, 420
Cfr13I GGNCC 4 cut(s) 127, 149, 164, 318
CseI GACGC 3 cut(s) 397, 404, 413
Csp6I GTAC 1 cut(s) 352
CviAII CATG 1 cut(s) 313
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 339, 402
DpnI GATC 1 cut(s) 504
DpnII GATC 1 cut(s) 502
Eam1104I CTCTTC 2 cut(s) 230, 470
EarI CTCTTC 2 cut(s) 230, 470
Eco47I GGWCC 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 149
FaeI CATG 1 cut(s) 316
FaiI YATR 7 cut(s) 95, 160, 162, 196, 213, 314, 521
FaqI GGGAC 3 cut(s) 135, 411, 446
FatI CATG 1 cut(s) 312
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 6, 287, 399
Fsp4HI GCNGC 3 cut(s) 6, 287, 399
GlaI GCGC 2 cut(s) 383, 407
GluI GCNGC 3 cut(s) 6, 287, 399
GsaI CCCAGC 1 cut(s) 88
HaeIII GGCC 4 cut(s) 128, 165, 239, 320
HapII CCGG 2 cut(s) 321, 421
HgaI GACGC 3 cut(s) 397, 404, 413
HhaI GCGC 2 cut(s) 384, 408
Hin1I GRCGYC 1 cut(s) 424
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 2 cut(s) 382, 406
HinP1I GCGC 2 cut(s) 382, 406
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 321, 421
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 4 cut(s) 301, 313, 332, 435
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 46, 177
HpyCH4V TGCA 3 cut(s) 24, 158, 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 388
HpyF3I CTNAG 2 cut(s) 339, 402
Hsp92I GRCGYC 1 cut(s) 424
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 2 cut(s) 382, 406
KflI GGGWCCC 1 cut(s) 149
KroI GCCGGC 1 cut(s) 420
KroNI GCCGGC 1 cut(s) 422
Kzo9I GATC 1 cut(s) 502
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 273, 385
MaeIII GTNAC 2 cut(s) 96, 392
MalI GATC 1 cut(s) 504
MboI GATC 1 cut(s) 502
MboII GAAGA 7 cut(s) 121, 162, 165, 168, 217, 388, 487
MflI RGATCY 1 cut(s) 502
MluI ACGCGT 1 cut(s) 389
MlyI GAGTC 1 cut(s) 194
MroNI GCCGGC 1 cut(s) 420
MseI TTAA 1 cut(s) 231
MspI CCGG 2 cut(s) 321, 421
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 388
NaeI GCCGGC 1 cut(s) 422
NdeI CATATG 1 cut(s) 160
NdeII GATC 1 cut(s) 502
NgoMIV GCCGGC 1 cut(s) 420
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 3 cut(s) 129, 150, 151
NmuCI GTSAC 1 cut(s) 392
PagI TCATGA 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 470
PdiI GCCGGC 1 cut(s) 422
PkrI GCNGC 3 cut(s) 7, 288, 400
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 129, 150, 151
PspPI GGNCC 4 cut(s) 127, 149, 164, 318
PspPPI RGGWCCY 1 cut(s) 149
PsuI RGATCY 1 cut(s) 502
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 3 cut(s) 6, 287, 399
Sau3AI GATC 1 cut(s) 502
Sau96I GGNCC 4 cut(s) 127, 149, 164, 318
SchI GAGTC 1 cut(s) 194
SetI ASST 8 cut(s) 57, 90, 299, 312, 353, 442, 511, 526
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 149
SmlI CTYRAG 2 cut(s) 141, 510
SmoI CTYRAG 2 cut(s) 141, 510
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 3 cut(s) 5, 286, 398
Tsp45I GTSAC 1 cut(s) 392
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.