Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002783

Physical Location & Seq

Genomic Coordinates Reverse (-)

27460874 .. 27483788

Gene Structure 22915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG145100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTGCTGCAGCTCTCTCCAAGCTCCTCTCCTCCCTCCTCCTTCAGCCACCACCACCACCACAACAAGAGTTCACTCTTCCGCCACGTGTCCCTCTCCCTAAACCCTCGCCACCATCCCCTCTCGTTGCAAGCTCGGCCCCATCGGCGGAAAATGTAGCCTTTCCGTCGCTGGCCAACTCAAACGTGCTCTTCTTCAGCTCGGCCGGCTTCAACGCCCAGGACAAGAAGAAGAGAAGGGGCGCCATCTCCAAGAAAAAGAAGAAGAGAAAGGCTAGGCAGGCTGCTAGAAGGAACAAGAACAACCCCCAAAGGTCTCCACAATCAAGATATCGAAATCAGTTCAAACAGCAAAAACCTGAGAAGAAGGACAATGAACCCAAGAGGAATGAGGACGGTGACAATGATGATAACTGGGACTTCTATGAAGATACCCATGTGGAGGCACCTGAAGAGTTCTCAAAGAAGGCTACACCGTTCTTTGCTCATGTTGCTGATAAGTTTTATGCCAAAGTCAATGATGATGTTTATTTAAATATTGGTCAGTATTACATGGACTCATTTTTCAATAGGATTTGTTTATGTACTAGCTCTGCTTCCACACAATTGCTACCCCCTCCCTTTGTTTTAGATGTTCTGGGAGCTGCACTTGCAACTCATTTAGACAAGCCTTGCATTTATATTGGGTGCATGCAGTCGGGCGAAGTTTTCTCTGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006029 GO:0006464 GO:0006486 GO:0006493 GO:0006807 GO:0008150 GO:0008152 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010384 GO:0010404 GO:0010405 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018208 GO:0018258 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044036 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0097708 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1990714

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T

Protein Analysis

240

Amino Acids

26.85

Weight (kDa)

9.34

Isoelectric Point (pI)

70.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27160 AT3G27160
fragaria_vesca	FvH4_5g07520 FvH4_6g53290
malus_domestica	MD09G1012000.v1.1 MD17G1012600.v1.1
prunus_persica	Prupe.3G305100_v2.0.a1 Prupe.5G156900_v2.0.a1
pyrus_communis	pycom17g01010
rosa_chinensis	RchiOBHm_Chr2g0088911 RchiOBHm_Chr2g0088961 RchiOBHm_Chr2g0089001 RchiOBHm_Chr2g0175441 RchiOBHm_Chr7g0191151
rosa_laevigata	RLG00000004474 RLG00000022327 RLG00000023458
rosa_multiflora	Rmu_co8428859.1_g000001 Rmu_sc0003512.1_g000011 Rmu_sc0007343.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077340 Rroxscaffold_3G00264000
rosa_rugosa	Rorug02G0584200 Rorug06G0509000 Rorug06G0509100
rosa_samantha	Rh1AG145100 Rh1CG136600 Rh1DG151700 Rh2AG664200 Rh2BG674900 Rh2CG041600 Rh2CG638100 Rh2DG688900 Rh7AG116400 Rh7CG121300 Rh7DG119600
rosa_wichuraiana	Rw2G003240 Rw2G054430 Rw3G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	242, 445
AciI	CCGC	2 cut(s)	83, 149
AcoI	YGGCCR	2 cut(s)	174, 204
AcuI	CTGAAG	3 cut(s)	29, 181, 471
AcvI	CACGTG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	2 cut(s)	148, 442
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	214, 346, 568
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	7 cut(s)	14, 25, 135, 201, 591, 644, 718
AluI	AGCT	7 cut(s)	14, 25, 135, 201, 591, 644, 718
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	3 cut(s)	138, 174, 204
ApeKI	GCWGC	5 cut(s)	5, 8, 11, 284, 644
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	423, 456
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	242, 445
BbrPI	CACGTG	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	23, 271, 631
BccI	CCATC	3 cut(s)	124, 151, 254
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	3 cut(s)	276, 288, 588
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	5 cut(s)	6, 9, 12, 285, 645
BlsI	GCNGC	5 cut(s)	7, 10, 13, 286, 646
Bme1390I	CCNGG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	141, 244, 447
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 442
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	148, 442
BseMII	CTCAG	2 cut(s)	351, 705
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	3 cut(s)	17, 22, 29
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	23, 271, 631
BsgI	GTGCAG	1 cut(s)	630
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	140, 176, 206
BshNI	GGYRCC	2 cut(s)	242, 445
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	2 cut(s)	77, 431
BslI	CCNNNNNNNGG	2 cut(s)	148, 442
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	77, 431
BsnI	GGCC	3 cut(s)	140, 176, 206
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	192
BspACI	CCGC	2 cut(s)	83, 149
BspANI	GGCC	3 cut(s)	140, 176, 206
BspCNI	CTCAG	2 cut(s)	352, 706
BspLI	GGNNCC	3 cut(s)	141, 244, 447
BspMAI	CTGCAG	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	197
BspT107I	GGYRCC	2 cut(s)	242, 445
BspTNI	GGTCTC	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	219
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	398, 477
Bst6I	CTCTTC	5 cut(s)	84, 197, 227, 260, 447
BstACI	GRCGYC	1 cut(s)	243
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	5 cut(s)	133, 174, 208, 282, 692
BstDEI	CTNAG	2 cut(s)	360, 714
BstF5I	GGATG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstMAI	GTCTC	1 cut(s)	321
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 137, 146, 207, 281, 491, 650
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	23, 271, 631
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	3 cut(s)	140, 176, 206
BtsCI	GGATG	1 cut(s)	116
Cac8I	GCNNGC	5 cut(s)	133, 174, 208, 282, 692
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	4 cut(s)	437, 488, 553, 691
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	2 cut(s)	360, 714
DinI	GGCGCC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	2 cut(s)	174, 204
EagI	CGGCCG	1 cut(s)	204
Eam1104I	CTCTTC	5 cut(s)	84, 197, 227, 260, 447
EarI	CTCTTC	5 cut(s)	84, 197, 227, 260, 447
EciI	GGCGGA	2 cut(s)	72, 164
EclXI	CGGCCG	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	3 cut(s)	29, 181, 471
Eco72I	CACGTG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	4 cut(s)	440, 491, 556, 694
FaiI	YATR	8 cut(s)	426, 438, 489, 507, 554, 583, 681, 692
FaqI	GGGAC	2 cut(s)	77, 431
FatI	CATG	4 cut(s)	436, 487, 552, 690
Fnu4HI	GCNGC	5 cut(s)	6, 9, 12, 285, 645
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	5 cut(s)	6, 9, 12, 285, 645
FspBI	CTAG	3 cut(s)	276, 288, 588
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	5 cut(s)	6, 9, 12, 285, 645
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	140, 176, 206
HapII	CCGG	1 cut(s)	207
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	440, 491, 556, 694
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	557
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	715
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	75
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	5 cut(s)	53, 231, 285, 361, 460
HpyCH4III	ACNGT	2 cut(s)	398, 477
HpyCH4IV	ACGT	2 cut(s)	88, 186
HpyCH4V	TGCA	7 cut(s)	11, 131, 647, 653, 675, 690, 694
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 137, 146, 207, 281, 491, 650
HpyF3I	CTNAG	2 cut(s)	360, 714
HpySE526I	ACGT	2 cut(s)	88, 186
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	440, 491, 556, 694
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
LguI	GCTCTTC	1 cut(s)	197
LmnI	GCTCC	2 cut(s)	30, 641
LpnPI	CCDG	9 cut(s)	158, 206, 220, 233, 266, 372, 400, 462, 623
Lsp1109I	GCAGC	3 cut(s)	23, 271, 631
MaeI	CTAG	3 cut(s)	276, 288, 588
MaeII	ACGT	2 cut(s)	88, 186
MaeIII	GTNAC	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	1 cut(s)	605
MluNI	TGGCCA	1 cut(s)	176
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	551
Mox20I	TGGCCA	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	533
Msp20I	TGGCCA	1 cut(s)	176
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	7 cut(s)	11, 137, 146, 207, 281, 491, 650
NaeI	GCCGGC	1 cut(s)	208
NarI	GGCGCC	1 cut(s)	243
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	4 cut(s)	440, 491, 556, 694
NlaIV	GGNNCC	3 cut(s)	141, 244, 447
NmeAIII	GCCGAG	2 cut(s)	116, 182
NmuCI	GTSAC	1 cut(s)	398
NspI	RCATGY	1 cut(s)	694
PaeI	GCATGC	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	208
PkrI	GCNGC	5 cut(s)	7, 10, 13, 286, 646
PleI	GAGTC	1 cut(s)	551
PluTI	GGCGCC	1 cut(s)	246
PmaCI	CACGTG	1 cut(s)	89
PmlI	CACGTG	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	551
Ppu21I	YACGTR	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	141, 244, 447
PspPI	GGNCC	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	533
SatI	GCNGC	5 cut(s)	6, 9, 12, 285, 645
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	192
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	244
SmiI	ATTTAAAT	1 cut(s)	534
SphI	GCATGC	1 cut(s)	694
Sse9I	AATT	1 cut(s)	605
SsiI	CCGC	2 cut(s)	83, 149
SspDI	GGCGCC	1 cut(s)	242
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	3 cut(s)	276, 288, 588
StyD4I	CCNGG	1 cut(s)	219
SwaI	ATTTAAAT	1 cut(s)	534
TaaI	ACNGT	2 cut(s)	398, 477
TaiI	ACGT	2 cut(s)	91, 189
TaqI	TCGA	1 cut(s)	334
TasI	AATT	1 cut(s)	605
TatI	WGTACW	1 cut(s)	584
Tru1I	TTAA	1 cut(s)	533
Tru9I	TTAA	1 cut(s)	533
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	5 cut(s)	5, 8, 11, 284, 644
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	2 cut(s)	390, 441
TspGWI	ACGGA	1 cut(s)	156
XceI	RCATGY	1 cut(s)	694
XspI	CTAG	3 cut(s)	276, 288, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.