DNA replication ATP-dependent helicase nuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840 |
| fragaria_vesca | FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 |
| malus_domestica | MD02G1227500.v1.1 MD07G1085900.v1.1 |
| prunus_persica | Prupe.2G112200_v2.0.a1 |
| pyrus_communis | pycom02g19640 pycom07g06880 |
| rosa_chinensis | RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971 |
| rosa_laevigata | RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987 |
| rosa_multiflora | Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00310940 |
| rosa_rugosa | Rorug01G0165900 Rorug01G0165900 |
| rosa_samantha | Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700 |
| rosa_wichuraiana | Rw1G015060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 491 |
| Acc36I | ACCTGC | 1 cut(s) | 3595 |
| AccB1I | GGYRCC | 2 cut(s) | 607, 1085 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1694 |
| AccI | GTMKAC | 1 cut(s) | 1524 |
| AccII | CGCG | 1 cut(s) | 3936 |
| AciI | CCGC | 8 cut(s) | 39, 186, 338, 415, 1925, 2112, 2614, 3403 |
| AclWI | GGATC | 9 cut(s) | 202, 699, 1251, 1627, 2765, 2778, 3126, 3161, 3475 |
| AcsI | RAATTY | 9 cut(s) | 422, 637, 1214, 1309, 2330, 2393, 2630, 2803, 2965 |
| AcuI | CTGAAG | 2 cut(s) | 1617, 1883 |
| AcyI | GRCGYC | 3 cut(s) | 221, 488, 608 |
| AfaI | GTAC | 7 cut(s) | 1335, 1862, 2071, 2353, 3021, 3310, 3401 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 223, 663, 664, 1045, 1694, 2605, 2655, 2885, 3825 |
| AflIII | ACRYGT | 1 cut(s) | 4008 |
| AgeI | ACCGGT | 1 cut(s) | 3556 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3106 |
| AhlI | ACTAGT | 2 cut(s) | 3158, 3811 |
| AjiI | CACGTC | 1 cut(s) | 480 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 885, 917, 1019, 1051 |
| AleI | CACNNNNGTG | 1 cut(s) | 2903 |
| Alw26I | GTCTC | 4 cut(s) | 252, 308, 495, 3864 |
| AlwI | GGATC | 9 cut(s) | 202, 699, 1251, 1627, 2765, 2778, 3126, 3161, 3475 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 254, 2347 |
| Ama87I | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| AoxI | GGCC | 3 cut(s) | 378, 1992, 3315 |
| ApeKI | GCWGC | 9 cut(s) | 248, 283, 286, 853, 1304, 1412, 2109, 2233, 2405 |
| ApoI | RAATTY | 9 cut(s) | 422, 637, 1214, 1309, 2330, 2393, 2630, 2803, 2965 |
| AseI | ATTAAT | 2 cut(s) | 3570, 3885 |
| AsiGI | ACCGGT | 1 cut(s) | 3556 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 3054 |
| AspA2I | CCTAGG | 2 cut(s) | 1322, 2735 |
| AspLEI | GCGC | 5 cut(s) | 111, 610, 1186, 2939, 3367 |
| AspS9I | GGNCC | 6 cut(s) | 1067, 1807, 2793, 3239, 3316, 3604 |
| AsuC2I | CCSGG | 2 cut(s) | 1015, 1016 |
| AsuII | TTCGAA | 2 cut(s) | 395, 521 |
| AvaI | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| AvaII | GGWCC | 5 cut(s) | 1067, 1807, 2793, 3239, 3604 |
| AvrII | CCTAGG | 2 cut(s) | 1322, 2735 |
| AxyI | CCTNAGG | 2 cut(s) | 2174, 3372 |
| BaeGI | GKGCMC | 3 cut(s) | 1090, 1825, 2692 |
| BamHI | GGATCC | 1 cut(s) | 2770 |
| BanI | GGYRCC | 2 cut(s) | 607, 1085 |
| BanII | GRGCYC | 3 cut(s) | 59, 1473, 1687 |
| BauI | CACGAG | 1 cut(s) | 3900 |
| BbsI | GAAGAC | 5 cut(s) | 1877, 1939, 2355, 3037, 3105 |
| BbvI | GCAGC | 9 cut(s) | 260, 295, 298, 865, 1316, 1399, 2121, 2245, 2392 |
| BceAI | ACGGC | 1 cut(s) | 2573 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3048, 3082 |
| BclI | TGATCA | 4 cut(s) | 835, 1906, 2815, 3277 |
| BcnI | CCSGG | 2 cut(s) | 1015, 1016 |
| BcoDI | GTCTC | 4 cut(s) | 252, 308, 495, 3864 |
| BcuI | ACTAGT | 2 cut(s) | 3158, 3811 |
| BfaI | CTAG | 8 cut(s) | 9, 1323, 1943, 2486, 2726, 2736, 3159, 3812 |
| BfmI | CTRYAG | 1 cut(s) | 3349 |
| BfoI | RGCGCY | 2 cut(s) | 112, 611 |
| BfuAI | ACCTGC | 1 cut(s) | 3595 |
| BisI | GCNGC | 9 cut(s) | 249, 284, 287, 854, 1305, 1413, 2110, 2234, 2406 |
| BlnI | CCTAGG | 2 cut(s) | 1322, 2735 |
| BlpI | GCTNAGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 9 cut(s) | 250, 285, 288, 855, 1306, 1414, 2111, 2235, 2407 |
| Bme18I | GGWCC | 5 cut(s) | 1067, 1807, 2793, 3239, 3604 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3106 |
| BmeT110I | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| BmgBI | CACGTC | 1 cut(s) | 480 |
| BmgT120I | GGNCC | 6 cut(s) | 1067, 1807, 2793, 3239, 3316, 3604 |
| BmiI | GGNNCC | 7 cut(s) | 609, 1087, 1472, 1686, 2733, 2772, 2795 |
| BmrI | ACTGGG | 3 cut(s) | 170, 1084, 1800 |
| BmuI | ACTGGG | 3 cut(s) | 170, 1084, 1800 |
| BpiI | GAAGAC | 5 cut(s) | 1877, 1939, 2355, 3037, 3105 |
| BplI | GAGNNNNNCTC | 7 cut(s) | 98, 130, 365, 397, 475, 507, 4039 |
| BpmI | CTGGAG | 3 cut(s) | 276, 1209, 1356 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 66 |
| Bpu14I | TTCGAA | 2 cut(s) | 395, 521 |
| BpuEI | CTTGAG | 3 cut(s) | 512, 1981, 4028 |
| BpuMI | CCSGG | 2 cut(s) | 1015, 1016 |
| Bsa29I | ATCGAT | 2 cut(s) | 1002, 1713 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2598, 3282 |
| BsaHI | GRCGYC | 3 cut(s) | 221, 488, 608 |
| BsaI | GGTCTC | 1 cut(s) | 252 |
| BsaWI | WCCGGW | 4 cut(s) | 493, 688, 3034, 3556 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1182, 1212, 1911, 1941, 2560, 2590 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 223, 663, 664, 1045, 1694, 2605, 2655, 2885, 3825 |
| Bse118I | RCCGGY | 2 cut(s) | 223, 3556 |
| Bse21I | CCTNAGG | 2 cut(s) | 2174, 3372 |
| Bse3DI | GCAATG | 7 cut(s) | 189, 866, 1179, 1363, 3064, 3069, 3386 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2598, 3282 |
| BseCI | ATCGAT | 2 cut(s) | 1002, 1713 |
| BseJI | GATNNNNATC | 2 cut(s) | 2598, 3282 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 223, 663, 664, 1045, 1694, 2605, 2655, 2885, 3825 |
| BseMI | GCAATG | 7 cut(s) | 189, 866, 1179, 1363, 3064, 3069, 3386 |
| BseRI | GAGGAG | 4 cut(s) | 63, 389, 1685, 3285 |
| BseSI | GKGCMC | 3 cut(s) | 1090, 1825, 2692 |
| BseXI | GCAGC | 9 cut(s) | 260, 295, 298, 865, 1316, 1399, 2121, 2245, 2392 |
| BsgI | GTGCAG | 1 cut(s) | 1398 |
| Bsh1236I | CGCG | 1 cut(s) | 3936 |
| BshFI | GGCC | 3 cut(s) | 380, 1994, 3317 |
| BshNI | GGYRCC | 2 cut(s) | 607, 1085 |
| BshTI | ACCGGT | 1 cut(s) | 3556 |
| BshVI | ATCGAT | 2 cut(s) | 1002, 1713 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| BsiSI | CCGG | 7 cut(s) | 224, 386, 494, 689, 1015, 3035, 3557 |
| BslFI | GGGAC | 6 cut(s) | 640, 742, 1532, 2198, 2779, 3147 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 223, 663, 664, 1045, 1694, 2605, 2655, 2885, 3825 |
| BsmAI | GTCTC | 4 cut(s) | 252, 308, 495, 3864 |
| BsmBI | CGTCTC | 1 cut(s) | 495 |
| BsmFI | GGGAC | 6 cut(s) | 640, 742, 1532, 2198, 2779, 3147 |
| BsmI | GAATGC | 3 cut(s) | 2007, 2407, 2880 |
| BsnI | GGCC | 3 cut(s) | 380, 1994, 3317 |
| Bso31I | GGTCTC | 1 cut(s) | 252 |
| BsoBI | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| Bsp119I | TTCGAA | 2 cut(s) | 395, 521 |
| Bsp1286I | GDGCHC | 6 cut(s) | 59, 1090, 1473, 1687, 1825, 2692 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 66 |
| BspACI | CCGC | 8 cut(s) | 39, 186, 338, 415, 1925, 2112, 2614, 3403 |
| BspANI | GGCC | 3 cut(s) | 380, 1994, 3317 |
| BspDI | ATCGAT | 2 cut(s) | 1002, 1713 |
| BspFNI | CGCG | 1 cut(s) | 3936 |
| BspHI | TCATGA | 1 cut(s) | 1510 |
| BspLI | GGNNCC | 7 cut(s) | 609, 1087, 1472, 1686, 2733, 2772, 2795 |
| BspMAI | CTGCAG | 1 cut(s) | 3353 |
| BspMI | ACCTGC | 1 cut(s) | 3595 |
| BspPI | GGATC | 9 cut(s) | 202, 699, 1251, 1627, 2765, 2778, 3126, 3161, 3475 |
| BspQI | GCTCTTC | 1 cut(s) | 2243 |
| BspT104I | TTCGAA | 2 cut(s) | 395, 521 |
| BspT107I | GGYRCC | 2 cut(s) | 607, 1085 |
| BspTNI | GGTCTC | 1 cut(s) | 252 |
| BsrDI | GCAATG | 7 cut(s) | 189, 866, 1179, 1363, 3064, 3069, 3386 |
| BsrFI | RCCGGY | 2 cut(s) | 223, 3556 |
| BssAI | RCCGGY | 2 cut(s) | 223, 3556 |
| BssNAI | GTATAC | 1 cut(s) | 1525 |
| BssNI | GRCGYC | 3 cut(s) | 221, 488, 608 |
| BssSI | CACGAG | 1 cut(s) | 3900 |
| BssT1I | CCWWGG | 3 cut(s) | 1322, 1533, 2735 |
| Bst1107I | GTATAC | 1 cut(s) | 1525 |
| Bst2BI | CACGAG | 1 cut(s) | 3900 |
| Bst4CI | ACNGT | 9 cut(s) | 244, 733, 1175, 1198, 1333, 1438, 2747, 3525, 3674 |
| Bst6I | CTCTTC | 6 cut(s) | 154, 1131, 1155, 1848, 2243, 3299 |
| BstACI | GRCGYC | 3 cut(s) | 221, 488, 608 |
| BstBI | TTCGAA | 2 cut(s) | 395, 521 |
| BstC8I | GCNNGC | 8 cut(s) | 612, 804, 1097, 1974, 2910, 3171, 3353, 3741 |
| BstDSI | CCRYGG | 1 cut(s) | 3759 |
| BstEII | GGTNACC | 2 cut(s) | 1009, 2450 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2883, 3823 |
| BstFNI | CGCG | 1 cut(s) | 3936 |
| BstH2I | RGCGCY | 2 cut(s) | 112, 611 |
| BstHHI | GCGC | 5 cut(s) | 111, 610, 1186, 2939, 3367 |
| BstMAI | GTCTC | 4 cut(s) | 252, 308, 495, 3864 |
| BstNSI | RCATGY | 9 cut(s) | 974, 1099, 1460, 1503, 2243, 2912, 3147, 3409, 4012 |
| BstPI | GGTNACC | 2 cut(s) | 1009, 2450 |
| BstSFI | CTRYAG | 1 cut(s) | 3349 |
| BstSLI | GKGCMC | 3 cut(s) | 1090, 1825, 2692 |
| BstUI | CGCG | 1 cut(s) | 3936 |
| BstV1I | GCAGC | 9 cut(s) | 260, 295, 298, 865, 1316, 1399, 2121, 2245, 2392 |
| BstV2I | GAAGAC | 5 cut(s) | 1877, 1939, 2355, 3037, 3105 |
| BstX2I | RGATCY | 3 cut(s) | 1619, 2770, 3467 |
| BstYI | RGATCY | 3 cut(s) | 1619, 2770, 3467 |
| BstZ17I | GTATAC | 1 cut(s) | 1525 |
| Bsu15I | ATCGAT | 2 cut(s) | 1002, 1713 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2174, 3372 |
| BsuRI | GGCC | 3 cut(s) | 380, 1994, 3317 |
| BsuTUI | ATCGAT | 2 cut(s) | 1002, 1713 |
| BtgI | CCRYGG | 1 cut(s) | 3759 |
| BtrI | CACGTC | 1 cut(s) | 480 |
| BtsI | GCAGTG | 1 cut(s) | 2476 |
| BtsIMutI | CAGTG | 6 cut(s) | 1097, 1180, 2476, 2752, 3521, 3679 |
| BveI | ACCTGC | 1 cut(s) | 3595 |
| Cac8I | GCNNGC | 8 cut(s) | 612, 804, 1097, 1974, 2910, 3171, 3353, 3741 |
| CaiI | CAGNNNCTG | 2 cut(s) | 254, 2347 |
| CciI | TCATGA | 1 cut(s) | 1510 |
| CfoI | GCGC | 5 cut(s) | 111, 610, 1186, 2939, 3367 |
| Cfr10I | RCCGGY | 2 cut(s) | 223, 3556 |
| Cfr13I | GGNCC | 6 cut(s) | 1067, 1807, 2793, 3239, 3316, 3604 |
| Cfr9I | CCCGGG | 1 cut(s) | 1014 |
| ClaI | ATCGAT | 2 cut(s) | 1002, 1713 |
| CseI | GACGC | 2 cut(s) | 229, 2810 |
| Csp6I | GTAC | 7 cut(s) | 1334, 1861, 2070, 2352, 3020, 3309, 3400 |
| CspAI | ACCGGT | 1 cut(s) | 3556 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 172, 207, 2226, 2261 |
| CviQI | GTAC | 7 cut(s) | 1334, 1861, 2070, 2352, 3020, 3309, 3400 |
| DinI | GGCGCC | 1 cut(s) | 609 |
| DraI | TTTAAA | 2 cut(s) | 2808, 3543 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3106 |
| Eam1104I | CTCTTC | 6 cut(s) | 154, 1131, 1155, 1848, 2243, 3299 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3106 |
| EarI | CTCTTC | 6 cut(s) | 154, 1131, 1155, 1848, 2243, 3299 |
| EciI | GGCGGA | 2 cut(s) | 28, 2629 |
| Eco130I | CCWWGG | 3 cut(s) | 1322, 1533, 2735 |
| Eco147I | AGGCCT | 2 cut(s) | 380, 1994 |
| Eco24I | GRGCYC | 3 cut(s) | 59, 1473, 1687 |
| Eco31I | GGTCTC | 1 cut(s) | 252 |
| Eco47I | GGWCC | 5 cut(s) | 1067, 1807, 2793, 3239, 3604 |
| Eco57I | CTGAAG | 2 cut(s) | 1617, 1883 |
| Eco81I | CCTNAGG | 2 cut(s) | 2174, 3372 |
| Eco88I | CYCGRG | 3 cut(s) | 1014, 1296, 3318 |
| Eco91I | GGTNACC | 2 cut(s) | 1009, 2450 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2883, 3823 |
| EcoO65I | GGTNACC | 2 cut(s) | 1009, 2450 |
| EcoRI | GAATTC | 1 cut(s) | 637 |
| EcoT14I | CCWWGG | 3 cut(s) | 1322, 1533, 2735 |
| EcoT22I | ATGCAT | 2 cut(s) | 1501, 3197 |
| EcoT38I | GRGCYC | 3 cut(s) | 59, 1473, 1687 |
| EgeI | GGCGCC | 1 cut(s) | 609 |
| EheI | GGCGCC | 1 cut(s) | 609 |
| ErhI | CCWWGG | 3 cut(s) | 1322, 1533, 2735 |
| Esp3I | CGTCTC | 1 cut(s) | 495 |
| FaqI | GGGAC | 6 cut(s) | 640, 742, 1532, 2198, 2779, 3147 |
| FauNDI | CATATG | 1 cut(s) | 2785 |
| FbaI | TGATCA | 4 cut(s) | 835, 1906, 2815, 3277 |
| FblI | GTMKAC | 1 cut(s) | 1524 |
| Fnu4HI | GCNGC | 9 cut(s) | 249, 284, 287, 854, 1305, 1413, 2110, 2234, 2406 |
| FriOI | GRGCYC | 3 cut(s) | 59, 1473, 1687 |
| Fsp4HI | GCNGC | 9 cut(s) | 249, 284, 287, 854, 1305, 1413, 2110, 2234, 2406 |
| FspBI | CTAG | 8 cut(s) | 9, 1323, 1943, 2486, 2726, 2736, 3159, 3812 |
| GlaI | GCGC | 5 cut(s) | 110, 609, 1185, 2938, 3366 |
| GluI | GCNGC | 9 cut(s) | 249, 284, 287, 854, 1305, 1413, 2110, 2234, 2406 |
| GsuI | CTGGAG | 3 cut(s) | 276, 1209, 1356 |
| HaeII | RGCGCY | 2 cut(s) | 112, 611 |
| HaeIII | GGCC | 3 cut(s) | 380, 1994, 3317 |
| HapII | CCGG | 7 cut(s) | 224, 386, 494, 689, 1015, 3035, 3557 |
| HgaI | GACGC | 2 cut(s) | 229, 2810 |
| HhaI | GCGC | 5 cut(s) | 111, 610, 1186, 2939, 3367 |
| Hin1I | GRCGYC | 3 cut(s) | 221, 488, 608 |
| Hin6I | GCGC | 5 cut(s) | 109, 608, 1184, 2937, 3365 |
| HinP1I | GCGC | 5 cut(s) | 109, 608, 1184, 2937, 3365 |
| HincII | GTYRAC | 4 cut(s) | 1570, 2722, 3670, 3831 |
| HindII | GTYRAC | 4 cut(s) | 1570, 2722, 3670, 3831 |
| HindIII | AAGCTT | 6 cut(s) | 573, 800, 1599, 2035, 3340, 3965 |
| HpaI | GTTAAC | 2 cut(s) | 1570, 3670 |
| HpaII | CCGG | 7 cut(s) | 224, 386, 494, 689, 1015, 3035, 3557 |
| Hpy99I | CGWCG | 2 cut(s) | 223, 2826 |
| HpyCH4III | ACNGT | 9 cut(s) | 244, 733, 1175, 1198, 1333, 1438, 2747, 3525, 3674 |
| HpyCH4IV | ACGT | 4 cut(s) | 479, 488, 1963, 3102 |
| HpySE526I | ACGT | 4 cut(s) | 479, 488, 1963, 3102 |
| Hsp92I | GRCGYC | 3 cut(s) | 221, 488, 608 |
| HspAI | GCGC | 5 cut(s) | 109, 608, 1184, 2937, 3365 |
| KasI | GGCGCC | 1 cut(s) | 607 |
| Ksp22I | TGATCA | 4 cut(s) | 835, 1906, 2815, 3277 |
| KspAI | GTTAAC | 2 cut(s) | 1570, 3670 |
| LguI | GCTCTTC | 1 cut(s) | 2243 |
| LmnI | GCTCC | 6 cut(s) | 199, 1476, 1690, 1813, 2568, 2737 |
| Lsp1109I | GCAGC | 9 cut(s) | 260, 295, 298, 865, 1316, 1399, 2121, 2245, 2392 |
| MaeI | CTAG | 8 cut(s) | 9, 1323, 1943, 2486, 2726, 2736, 3159, 3812 |
| MaeII | ACGT | 4 cut(s) | 479, 488, 1963, 3102 |
| MflI | RGATCY | 3 cut(s) | 1619, 2770, 3467 |
| MhlI | GDGCHC | 6 cut(s) | 59, 1090, 1473, 1687, 1825, 2692 |
| Mly113I | GGCGCC | 1 cut(s) | 608 |
| MlyI | GAGTC | 3 cut(s) | 460, 766, 1070 |
| MmeI | TCCRAC | 3 cut(s) | 118, 1782, 3488 |
| Mph1103I | ATGCAT | 2 cut(s) | 1501, 3197 |
| MroXI | GAANNNNTTC | 1 cut(s) | 3054 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1275, 2061, 2526, 2903 |
| MspA1I | CMGCKG | 1 cut(s) | 2112 |
| MspI | CCGG | 7 cut(s) | 224, 386, 494, 689, 1015, 3035, 3557 |
| Mva1269I | GAATGC | 3 cut(s) | 2007, 2407, 2880 |
| MvnI | CGCG | 1 cut(s) | 3936 |
| NarI | GGCGCC | 1 cut(s) | 608 |
| NciI | CCSGG | 2 cut(s) | 1015, 1016 |
| NdeI | CATATG | 1 cut(s) | 2785 |
| NlaIV | GGNNCC | 7 cut(s) | 609, 1087, 1472, 1686, 2733, 2772, 2795 |
| NmeAIII | GCCGAG | 1 cut(s) | 315 |
| NmuCI | GTSAC | 8 cut(s) | 475, 988, 1247, 1642, 2450, 2519, 3449, 3930 |
| NsiI | ATGCAT | 2 cut(s) | 1501, 3197 |
| NspI | RCATGY | 9 cut(s) | 974, 1099, 1460, 1503, 2243, 2912, 3147, 3409, 4012 |
| NspV | TTCGAA | 2 cut(s) | 395, 521 |
| OliI | CACNNNNGTG | 1 cut(s) | 2903 |
| PaeI | GCATGC | 2 cut(s) | 1099, 2912 |
| PagI | TCATGA | 1 cut(s) | 1510 |
| PceI | AGGCCT | 2 cut(s) | 380, 1994 |
| PciI | ACATGT | 1 cut(s) | 4008 |
| PciSI | GCTCTTC | 1 cut(s) | 2243 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 287, 485, 639 |
| PctI | GAATGC | 3 cut(s) | 2007, 2407, 2880 |
| PdmI | GAANNNNTTC | 1 cut(s) | 3054 |
| PfeI | GAWTC | 8 cut(s) | 268, 278, 914, 1592, 1754, 2029, 2132, 2474 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1694 |
| PfoI | TCCNGGA | 1 cut(s) | 430 |
| PinAI | ACCGGT | 1 cut(s) | 3556 |
| PkrI | GCNGC | 9 cut(s) | 250, 285, 288, 855, 1306, 1414, 2111, 2235, 2407 |
| PleI | GAGTC | 3 cut(s) | 459, 765, 1070 |
| PluTI | GGCGCC | 1 cut(s) | 611 |
| PpsI | GAGTC | 3 cut(s) | 459, 765, 1070 |
| PscI | ACATGT | 1 cut(s) | 4008 |
| PshBI | ATTAAT | 2 cut(s) | 3570, 3885 |
| PspEI | GGTNACC | 2 cut(s) | 1009, 2450 |
| PspN4I | GGNNCC | 7 cut(s) | 609, 1087, 1472, 1686, 2733, 2772, 2795 |
| PspPI | GGNCC | 6 cut(s) | 1067, 1807, 2793, 3239, 3316, 3604 |
| PstI | CTGCAG | 1 cut(s) | 3353 |
| PstNI | CAGNNNCTG | 2 cut(s) | 254, 2347 |
| PsuI | RGATCY | 3 cut(s) | 1619, 2770, 3467 |
| RsaI | GTAC | 7 cut(s) | 1335, 1862, 2071, 2353, 3021, 3310, 3401 |
| RsaNI | GTAC | 7 cut(s) | 1334, 1861, 2070, 2352, 3020, 3309, 3400 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1275, 2061, 2526, 2903 |
| SapI | GCTCTTC | 1 cut(s) | 2243 |
| SatI | GCNGC | 9 cut(s) | 249, 284, 287, 854, 1305, 1413, 2110, 2234, 2406 |
| Sau96I | GGNCC | 6 cut(s) | 1067, 1807, 2793, 3239, 3316, 3604 |
| SchI | GAGTC | 3 cut(s) | 460, 766, 1070 |
| SduI | GDGCHC | 6 cut(s) | 59, 1090, 1473, 1687, 1825, 2692 |
| SfcI | CTRYAG | 1 cut(s) | 3349 |
| SfoI | GGCGCC | 1 cut(s) | 609 |
| SfuI | TTCGAA | 2 cut(s) | 395, 521 |
| SinI | GGWCC | 5 cut(s) | 1067, 1807, 2793, 3239, 3604 |
| SmaI | CCCGGG | 1 cut(s) | 1016 |
| SmiI | ATTTAAAT | 1 cut(s) | 2808 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1275, 2061, 2526, 2903 |
| SmlI | CTYRAG | 3 cut(s) | 527, 1996, 4043 |
| SmoI | CTYRAG | 3 cut(s) | 527, 1996, 4043 |
| SpeI | ACTAGT | 2 cut(s) | 3158, 3811 |
| SphI | GCATGC | 2 cut(s) | 1099, 2912 |
| SseBI | AGGCCT | 2 cut(s) | 380, 1994 |
| SsiI | CCGC | 8 cut(s) | 39, 186, 338, 415, 1925, 2112, 2614, 3403 |
| SspDI | GGCGCC | 1 cut(s) | 607 |
| SspI | AATATT | 3 cut(s) | 1392, 1557, 3010 |
| SspMI | CTAG | 8 cut(s) | 9, 1323, 1943, 2486, 2726, 2736, 3159, 3812 |
| StuI | AGGCCT | 2 cut(s) | 380, 1994 |
| StyI | CCWWGG | 3 cut(s) | 1322, 1533, 2735 |
| SwaI | ATTTAAAT | 1 cut(s) | 2808 |
| TaaI | ACNGT | 9 cut(s) | 244, 733, 1175, 1198, 1333, 1438, 2747, 3525, 3674 |
| TaiI | ACGT | 4 cut(s) | 482, 491, 1966, 3105 |
| TatI | WGTACW | 2 cut(s) | 1333, 3308 |
| TfiI | GAWTC | 8 cut(s) | 268, 278, 914, 1592, 1754, 2029, 2132, 2474 |
| TscAI | CASTG | 6 cut(s) | 1097, 1180, 2476, 2752, 3528, 3679 |
| TseFI | GTSAC | 8 cut(s) | 475, 988, 1247, 1642, 2450, 2519, 3449, 3930 |
| TseI | GCWGC | 9 cut(s) | 248, 283, 286, 853, 1304, 1412, 2109, 2233, 2405 |
| Tsp45I | GTSAC | 8 cut(s) | 475, 988, 1247, 1642, 2450, 2519, 3449, 3930 |
| TspGWI | ACGGA | 4 cut(s) | 631, 2041, 2292, 3748 |
| TspMI | CCCGGG | 1 cut(s) | 1014 |
| TspRI | CASTG | 6 cut(s) | 1097, 1180, 2476, 2752, 3528, 3679 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1694 |
| VpaK11BI | GGWCC | 5 cut(s) | 1067, 1807, 2793, 3239, 3604 |
| VspI | ATTAAT | 2 cut(s) | 3570, 3885 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2883, 3823 |
| XapI | RAATTY | 9 cut(s) | 422, 637, 1214, 1309, 2330, 2393, 2630, 2803, 2965 |
| XceI | RCATGY | 9 cut(s) | 974, 1099, 1460, 1503, 2243, 2912, 3147, 3409, 4012 |
| XmaI | CCCGGG | 1 cut(s) | 1014 |
| XmaJI | CCTAGG | 2 cut(s) | 1322, 2735 |
| XmiI | GTMKAC | 1 cut(s) | 1524 |
| XmnI | GAANNNNTTC | 1 cut(s) | 3054 |
| XspI | CTAG | 8 cut(s) | 9, 1323, 1943, 2486, 2726, 2736, 3159, 3812 |
| ZraI | GACGTC | 1 cut(s) | 489 |
| Zsp2I | ATGCAT | 2 cut(s) | 1501, 3197 |