DNA replication ATP-dependent helicase nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840 |
| fragaria_vesca | FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 |
| malus_domestica | MD02G1227500.v1.1 MD07G1085900.v1.1 |
| prunus_persica | Prupe.2G112200_v2.0.a1 |
| pyrus_communis | pycom02g19640 pycom07g06880 |
| rosa_chinensis | RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971 |
| rosa_laevigata | RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987 |
| rosa_multiflora | Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00310940 |
| rosa_rugosa | Rorug01G0165900 Rorug01G0165900 |
| rosa_samantha | Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700 |
| rosa_wichuraiana | Rw1G015060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1280, 2543 |
| AatII | GACGTC | 1 cut(s) | 41 |
| Acc16I | TGCGCA | 3 cut(s) | 243, 1851, 2473 |
| Acc36I | ACCTGC | 1 cut(s) | 3628 |
| Acc65I | GGTACC | 1 cut(s) | 1887 |
| AccB1I | GGYRCC | 1 cut(s) | 1887 |
| AccIII | TCCGGA | 1 cut(s) | 223 |
| AciI | CCGC | 5 cut(s) | 189, 575, 2269, 2650, 2854 |
| AclI | AACGTT | 1 cut(s) | 1550 |
| AclWI | GGATC | 8 cut(s) | 223, 1269, 1645, 2798, 2811, 3194, 3645, 3970 |
| AcoI | YGGCCR | 1 cut(s) | 1825 |
| AcsI | RAATTY | 7 cut(s) | 298, 349, 1232, 1459, 1609, 2666, 2836 |
| AcuI | CTGAAG | 3 cut(s) | 1315, 2601, 2621 |
| AcvI | CACGTG | 1 cut(s) | 2740 |
| AcyI | GRCGYC | 2 cut(s) | 38, 3732 |
| AdeI | CACNNNGTG | 1 cut(s) | 1400 |
| AfeI | AGCGCT | 1 cut(s) | 437 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 715, 745, 1075, 1712, 2918, 3160, 3982 |
| AflII | CTTAAG | 1 cut(s) | 2867 |
| AhlI | ACTAGT | 2 cut(s) | 3697, 3844 |
| Alw21I | GWGCWC | 2 cut(s) | 1491, 2728 |
| Alw26I | GTCTC | 5 cut(s) | 1439, 2142, 3552, 3897, 4065 |
| Alw44I | GTGCAC | 1 cut(s) | 2724 |
| AlwI | GGATC | 8 cut(s) | 223, 1269, 1645, 2798, 2811, 3194, 3645, 3970 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 152, 679 |
| Ama87I | CYCGRG | 2 cut(s) | 1339, 3351 |
| Aor13HI | TCCGGA | 1 cut(s) | 223 |
| Aor51HI | AGCGCT | 1 cut(s) | 437 |
| AoxI | GGCC | 6 cut(s) | 399, 1560, 1695, 1825, 3272, 4092 |
| ApaLI | GTGCAC | 1 cut(s) | 2724 |
| ApeKI | GCWGC | 9 cut(s) | 904, 1322, 1391, 1430, 2192, 2245, 2441, 2732, 2879 |
| ApoI | RAATTY | 7 cut(s) | 298, 349, 1232, 1459, 1609, 2666, 2836 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 290, 322 |
| AseI | ATTAAT | 2 cut(s) | 3603, 3918 |
| Asp718I | GGTACC | 1 cut(s) | 1887 |
| AspLEI | GCGC | 8 cut(s) | 111, 244, 438, 549, 1852, 2474, 3400, 3495 |
| AspS9I | GGNCC | 1 cut(s) | 3272 |
| AsuC2I | CCSGG | 1 cut(s) | 894 |
| AsuII | TTCGAA | 2 cut(s) | 2282, 2345 |
| AsuNHI | GCTAGC | 1 cut(s) | 1325 |
| AvaI | CYCGRG | 2 cut(s) | 1339, 3351 |
| AxyI | CCTNAGG | 2 cut(s) | 2201, 3405 |
| BaeGI | GKGCMC | 1 cut(s) | 2728 |
| BalI | TGGCCA | 1 cut(s) | 1827 |
| BamHI | GGATCC | 1 cut(s) | 2803 |
| BanI | GGYRCC | 1 cut(s) | 1887 |
| BanII | GRGCYC | 1 cut(s) | 1705 |
| BauI | CACGAG | 1 cut(s) | 3933 |
| BbrPI | CACGTG | 1 cut(s) | 2740 |
| BbsI | GAAGAC | 4 cut(s) | 632, 1904, 3070, 3138 |
| Bbv12I | GWGCWC | 2 cut(s) | 1491, 2728 |
| BbvCI | CCTCAGC | 1 cut(s) | 72 |
| BbvI | GCAGC | 9 cut(s) | 916, 1334, 1403, 1417, 2179, 2257, 2428, 2719, 2891 |
| BccI | CCATC | 9 cut(s) | 476, 638, 1687, 1777, 2091, 2108, 2929, 3655, 3785 |
| BceAI | ACGGC | 4 cut(s) | 61, 248, 1547, 2282 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3081, 3115, 4065, 4099 |
| BciVI | GTATCC | 3 cut(s) | 715, 3555, 4054 |
| BclI | TGATCA | 2 cut(s) | 886, 2848 |
| BcnI | CCSGG | 1 cut(s) | 894 |
| BcoDI | GTCTC | 5 cut(s) | 1439, 2142, 3552, 3897, 4065 |
| BcuI | ACTAGT | 2 cut(s) | 3697, 3844 |
| BfmI | CTRYAG | 1 cut(s) | 1925 |
| BfoI | RGCGCY | 2 cut(s) | 112, 439 |
| BfrI | CTTAAG | 1 cut(s) | 2867 |
| BfuAI | ACCTGC | 1 cut(s) | 3628 |
| BfuI | GTATCC | 3 cut(s) | 715, 3555, 4054 |
| BglII | AGATCT | 3 cut(s) | 695, 1961, 2643 |
| BmcAI | AGTACT | 1 cut(s) | 2037 |
| BmeT110I | CYCGRG | 2 cut(s) | 1339, 3351 |
| BmgT120I | GGNCC | 1 cut(s) | 3272 |
| BmiI | GGNNCC | 5 cut(s) | 222, 1704, 1889, 2769, 2805 |
| BmtI | GCTAGC | 1 cut(s) | 1329 |
| BpiI | GAAGAC | 4 cut(s) | 632, 1904, 3070, 3138 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 496, 528, 4072 |
| BpmI | CTGGAG | 4 cut(s) | 327, 618, 1227, 1475 |
| Bpu10I | CCTNAGC | 2 cut(s) | 72, 2128 |
| Bpu14I | TTCGAA | 2 cut(s) | 2282, 2345 |
| BpuEI | CTTGAG | 1 cut(s) | 2000 |
| BpuMI | CCSGG | 1 cut(s) | 894 |
| BsaAI | YACGTR | 1 cut(s) | 2740 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3315 |
| BsaHI | GRCGYC | 2 cut(s) | 38, 3732 |
| BsaI | GGTCTC | 1 cut(s) | 4065 |
| BsaJI | CCNNGG | 8 cut(s) | 893, 1340, 1698, 1836, 2298, 2600, 3820, 3875 |
| BsaWI | WCCGGW | 2 cut(s) | 223, 514 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 190, 220, 1200, 1230, 1938, 1968 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 715, 745, 1075, 1712, 2918, 3160, 3982 |
| Bse1I | ACTGG | 9 cut(s) | 635, 1140, 1828, 1912, 3192, 3260, 3430, 3590, 3911 |
| Bse21I | CCTNAGG | 2 cut(s) | 2201, 3405 |
| Bse3DI | GCAATG | 4 cut(s) | 917, 1151, 1381, 3097 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3315 |
| BseAI | TCCGGA | 1 cut(s) | 223 |
| BseDI | CCNNGG | 8 cut(s) | 893, 1340, 1698, 1836, 2298, 2600, 3820, 3875 |
| BseJI | GATNNNNATC | 1 cut(s) | 3315 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 715, 745, 1075, 1712, 2918, 3160, 3982 |
| BseMI | GCAATG | 4 cut(s) | 917, 1151, 1381, 3097 |
| BseNI | ACTGG | 9 cut(s) | 635, 1140, 1828, 1912, 3192, 3260, 3430, 3590, 3911 |
| BseRI | GAGGAG | 6 cut(s) | 392, 395, 1169, 1457, 1703, 3318 |
| BseSI | GKGCMC | 1 cut(s) | 2728 |
| BseXI | GCAGC | 9 cut(s) | 916, 1334, 1403, 1417, 2179, 2257, 2428, 2719, 2891 |
| BseYI | CCCAGC | 1 cut(s) | 181 |
| BsgI | GTGCAG | 3 cut(s) | 1410, 1416, 2089 |
| Bsh1285I | CGRYCG | 1 cut(s) | 296 |
| BshFI | GGCC | 6 cut(s) | 401, 1562, 1697, 1827, 3274, 4094 |
| BshNI | GGYRCC | 1 cut(s) | 1887 |
| BsiEI | CGRYCG | 1 cut(s) | 296 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1491, 2728 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1339, 3351 |
| BsiSI | CCGG | 8 cut(s) | 209, 224, 407, 515, 554, 893, 3769, 4029 |
| BslFI | GGGAC | 4 cut(s) | 1550, 2799, 2812, 3180 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 715, 745, 1075, 1712, 2918, 3160, 3982 |
| BsmAI | GTCTC | 5 cut(s) | 1439, 2142, 3552, 3897, 4065 |
| BsmFI | GGGAC | 4 cut(s) | 1550, 2799, 2812, 3180 |
| BsmI | GAATGC | 3 cut(s) | 1381, 2443, 2913 |
| BsnI | GGCC | 6 cut(s) | 401, 1562, 1697, 1827, 3274, 4094 |
| Bso31I | GGTCTC | 1 cut(s) | 4065 |
| BsoBI | CYCGRG | 2 cut(s) | 1339, 3351 |
| Bsp119I | TTCGAA | 2 cut(s) | 2282, 2345 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1491, 1705, 2728 |
| Bsp13I | TCCGGA | 1 cut(s) | 223 |
| Bsp1407I | TGTACA | 3 cut(s) | 1542, 1863, 3679 |
| Bsp19I | CCATGG | 1 cut(s) | 1836 |
| BspACI | CCGC | 5 cut(s) | 189, 575, 2269, 2650, 2854 |
| BspANI | GGCC | 6 cut(s) | 401, 1562, 1697, 1827, 3274, 4094 |
| BspEI | TCCGGA | 1 cut(s) | 223 |
| BspHI | TCATGA | 3 cut(s) | 283, 1777, 2670 |
| BspLI | GGNNCC | 5 cut(s) | 222, 1704, 1889, 2769, 2805 |
| BspMAI | CTGCAG | 1 cut(s) | 1929 |
| BspMI | ACCTGC | 1 cut(s) | 3628 |
| BspOI | GCTAGC | 1 cut(s) | 1329 |
| BspPI | GGATC | 8 cut(s) | 223, 1269, 1645, 2798, 2811, 3194, 3645, 3970 |
| BspQI | GCTCTTC | 2 cut(s) | 787, 3892 |
| BspT104I | TTCGAA | 2 cut(s) | 2282, 2345 |
| BspT107I | GGYRCC | 1 cut(s) | 1887 |
| BspTI | CTTAAG | 1 cut(s) | 2867 |
| BspTNI | GGTCTC | 1 cut(s) | 4065 |
| BsrDI | GCAATG | 4 cut(s) | 917, 1151, 1381, 3097 |
| BsrGI | TGTACA | 3 cut(s) | 1542, 1863, 3679 |
| BsrI | ACTGG | 9 cut(s) | 635, 1140, 1828, 1912, 3192, 3260, 3430, 3590, 3911 |
| BssECI | CCNNGG | 8 cut(s) | 893, 1340, 1698, 1836, 2298, 2600, 3820, 3875 |
| BssNI | GRCGYC | 2 cut(s) | 38, 3732 |
| BssSI | CACGAG | 1 cut(s) | 3933 |
| BssT1I | CCWWGG | 2 cut(s) | 1836, 3875 |
| Bst2BI | CACGAG | 1 cut(s) | 3933 |
| Bst6I | CTCTTC | 7 cut(s) | 199, 586, 787, 1875, 2279, 3820, 3892 |
| BstACI | GRCGYC | 2 cut(s) | 38, 3732 |
| BstAFI | CTTAAG | 1 cut(s) | 2867 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 152, 2732 |
| BstAUI | TGTACA | 3 cut(s) | 1542, 1863, 3679 |
| BstBAI | YACGTR | 1 cut(s) | 2740 |
| BstBI | TTCGAA | 2 cut(s) | 2282, 2345 |
| BstC8I | GCNNGC | 9 cut(s) | 551, 573, 617, 1161, 1327, 2859, 2943, 3204, 3386 |
| BstDSI | CCRYGG | 2 cut(s) | 1836, 2298 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 713, 2916, 3980 |
| BstH2I | RGCGCY | 2 cut(s) | 112, 439 |
| BstHHI | GCGC | 8 cut(s) | 111, 244, 438, 549, 1852, 2474, 3400, 3495 |
| BstMAI | GTCTC | 5 cut(s) | 1439, 2142, 3552, 3897, 4065 |
| BstMCI | CGRYCG | 1 cut(s) | 296 |
| BstNSI | RCATGY | 8 cut(s) | 553, 873, 1034, 1163, 1543, 2068, 2945, 3180 |
| BstSFI | CTRYAG | 1 cut(s) | 1925 |
| BstSLI | GKGCMC | 1 cut(s) | 2728 |
| BstV1I | GCAGC | 9 cut(s) | 916, 1334, 1403, 1417, 2179, 2257, 2428, 2719, 2891 |
| BstV2I | GAAGAC | 4 cut(s) | 632, 1904, 3070, 3138 |
| BstX2I | RGATCY | 6 cut(s) | 228, 695, 1637, 1961, 2643, 2803 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 482 |
| BstYI | RGATCY | 6 cut(s) | 228, 695, 1637, 1961, 2643, 2803 |
| Bsu36I | CCTNAGG | 2 cut(s) | 2201, 3405 |
| BsuI | GTATCC | 3 cut(s) | 715, 3555, 4054 |
| BsuRI | GGCC | 6 cut(s) | 401, 1562, 1697, 1827, 3274, 4094 |
| BtgI | CCRYGG | 2 cut(s) | 1836, 2298 |
| BtsI | GCAGTG | 2 cut(s) | 2512, 3893 |
| BtsIMutI | CAGTG | 6 cut(s) | 677, 1198, 1256, 2512, 3712, 3893 |
| BveI | ACCTGC | 1 cut(s) | 3628 |
| Cac8I | GCNNGC | 9 cut(s) | 551, 573, 617, 1161, 1327, 2859, 2943, 3204, 3386 |
| CaiI | CAGNNNCTG | 2 cut(s) | 152, 679 |
| CciI | TCATGA | 3 cut(s) | 283, 1777, 2670 |
| CfoI | GCGC | 8 cut(s) | 111, 244, 438, 549, 1852, 2474, 3400, 3495 |
| Cfr13I | GGNCC | 1 cut(s) | 3272 |
| CseI | GACGC | 1 cut(s) | 3721 |
| CsiI | ACCWGGT | 1 cut(s) | 1968 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2445, 2480 |
| DraI | TTTAAA | 2 cut(s) | 2841, 4066 |
| DraIII | CACNNNGTG | 1 cut(s) | 1400 |
| EaeI | YGGCCR | 1 cut(s) | 1825 |
| Eam1104I | CTCTTC | 7 cut(s) | 199, 586, 787, 1875, 2279, 3820, 3892 |
| EarI | CTCTTC | 7 cut(s) | 199, 586, 787, 1875, 2279, 3820, 3892 |
| EciI | GGCGGA | 1 cut(s) | 590 |
| Eco130I | CCWWGG | 2 cut(s) | 1836, 3875 |
| Eco147I | AGGCCT | 1 cut(s) | 401 |
| Eco24I | GRGCYC | 1 cut(s) | 1705 |
| Eco31I | GGTCTC | 1 cut(s) | 4065 |
| Eco32I | GATATC | 2 cut(s) | 510, 4057 |
| Eco47III | AGCGCT | 1 cut(s) | 437 |
| Eco57I | CTGAAG | 3 cut(s) | 1315, 2601, 2621 |
| Eco72I | CACGTG | 1 cut(s) | 2740 |
| Eco81I | CCTNAGG | 2 cut(s) | 2201, 3405 |
| Eco88I | CYCGRG | 2 cut(s) | 1339, 3351 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 713, 2916, 3980 |
| EcoRI | GAATTC | 2 cut(s) | 1609, 2666 |
| EcoRV | GATATC | 2 cut(s) | 510, 4057 |
| EcoT14I | CCWWGG | 2 cut(s) | 1836, 3875 |
| EcoT22I | ATGCAT | 2 cut(s) | 1032, 3230 |
| EcoT38I | GRGCYC | 1 cut(s) | 1705 |
| ErhI | CCWWGG | 2 cut(s) | 1836, 3875 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2850, 2882 |
| FaqI | GGGAC | 4 cut(s) | 1550, 2799, 2812, 3180 |
| FauI | CCCGC | 2 cut(s) | 196, 2643 |
| FbaI | TGATCA | 2 cut(s) | 886, 2848 |
| FriOI | GRGCYC | 1 cut(s) | 1705 |
| FspI | TGCGCA | 3 cut(s) | 243, 1851, 2473 |
| GlaI | GCGC | 8 cut(s) | 110, 243, 437, 548, 1851, 2473, 3399, 3494 |
| GsaI | CCCAGC | 1 cut(s) | 185 |
| GsuI | CTGGAG | 4 cut(s) | 327, 618, 1227, 1475 |
| HaeII | RGCGCY | 2 cut(s) | 112, 439 |
| HaeIII | GGCC | 6 cut(s) | 401, 1562, 1697, 1827, 3274, 4094 |
| HapII | CCGG | 8 cut(s) | 209, 224, 407, 515, 554, 893, 3769, 4029 |
| HgaI | GACGC | 1 cut(s) | 3721 |
| HhaI | GCGC | 8 cut(s) | 111, 244, 438, 549, 1852, 2474, 3400, 3495 |
| Hin1I | GRCGYC | 2 cut(s) | 38, 3732 |
| Hin6I | GCGC | 8 cut(s) | 109, 242, 436, 547, 1850, 2472, 3398, 3493 |
| HinP1I | GCGC | 8 cut(s) | 109, 242, 436, 547, 1850, 2472, 3398, 3493 |
| HincII | GTYRAC | 6 cut(s) | 736, 2656, 2758, 3703, 3864, 4018 |
| HindII | GTYRAC | 6 cut(s) | 736, 2656, 2758, 3703, 3864, 4018 |
| HindIII | AAGCTT | 4 cut(s) | 851, 2333, 3373, 3998 |
| HpaI | GTTAAC | 2 cut(s) | 736, 3703 |
| HpaII | CCGG | 8 cut(s) | 209, 224, 407, 515, 554, 893, 3769, 4029 |
| Hpy99I | CGWCG | 3 cut(s) | 40, 1992, 3559 |
| HpyAV | CCTTC | 8 cut(s) | 678, 837, 872, 1632, 2409, 2622, 2645, 3266 |
| HpyCH4IV | ACGT | 6 cut(s) | 38, 1550, 1990, 2739, 2788, 2987 |
| HpySE526I | ACGT | 6 cut(s) | 38, 1550, 1990, 2739, 2788, 2987 |
| Hsp92I | GRCGYC | 2 cut(s) | 38, 3732 |
| HspAI | GCGC | 8 cut(s) | 109, 242, 436, 547, 1850, 2472, 3398, 3493 |
| Kpn2I | TCCGGA | 1 cut(s) | 223 |
| KpnI | GGTACC | 1 cut(s) | 1891 |
| Ksp22I | TGATCA | 2 cut(s) | 886, 2848 |
| KspAI | GTTAAC | 2 cut(s) | 736, 3703 |
| LguI | GCTCTTC | 2 cut(s) | 787, 3892 |
| LmnI | GCTCC | 9 cut(s) | 190, 211, 1156, 1494, 1708, 1840, 2133, 2604, 2773 |
| Lsp1109I | GCAGC | 9 cut(s) | 916, 1334, 1403, 1417, 2179, 2257, 2428, 2719, 2891 |
| MabI | ACCWGGT | 1 cut(s) | 1968 |
| MaeII | ACGT | 6 cut(s) | 38, 1550, 1990, 2739, 2788, 2987 |
| MaeIII | GTNAC | 8 cut(s) | 314, 496, 758, 1131, 2271, 2486, 2555, 3172 |
| MflI | RGATCY | 6 cut(s) | 228, 695, 1637, 1961, 2643, 2803 |
| MhlI | GDGCHC | 3 cut(s) | 1491, 1705, 2728 |
| MlsI | TGGCCA | 1 cut(s) | 1827 |
| MluNI | TGGCCA | 1 cut(s) | 1827 |
| MlyI | GAGTC | 5 cut(s) | 522, 572, 817, 1097, 2065 |
| MmeI | TCCRAC | 6 cut(s) | 78, 343, 1860, 2477, 3605, 3940 |
| Mox20I | TGGCCA | 1 cut(s) | 1827 |
| Mph1103I | ATGCAT | 2 cut(s) | 1032, 3230 |
| MroI | TCCGGA | 1 cut(s) | 223 |
| MscI | TGGCCA | 1 cut(s) | 1827 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1293, 1386, 2088, 2479, 2562, 3845 |
| Msp20I | TGGCCA | 1 cut(s) | 1827 |
| MspA1I | CMGCKG | 1 cut(s) | 2854 |
| MspCI | CTTAAG | 1 cut(s) | 2867 |
| MspI | CCGG | 8 cut(s) | 209, 224, 407, 515, 554, 893, 3769, 4029 |
| Mva1269I | GAATGC | 3 cut(s) | 1381, 2443, 2913 |
| NciI | CCSGG | 1 cut(s) | 894 |
| NcoI | CCATGG | 1 cut(s) | 1836 |
| NheI | GCTAGC | 1 cut(s) | 1325 |
| NlaIV | GGNNCC | 5 cut(s) | 222, 1704, 1889, 2769, 2805 |
| NmuCI | GTSAC | 4 cut(s) | 496, 2271, 2486, 2555 |
| NsbI | TGCGCA | 3 cut(s) | 243, 1851, 2473 |
| NsiI | ATGCAT | 2 cut(s) | 1032, 3230 |
| NspI | RCATGY | 8 cut(s) | 553, 873, 1034, 1163, 1543, 2068, 2945, 3180 |
| NspV | TTCGAA | 2 cut(s) | 2282, 2345 |
| PaeI | GCATGC | 3 cut(s) | 553, 1163, 2945 |
| PaeR7I | CTCGAG | 1 cut(s) | 3351 |
| PagI | TCATGA | 3 cut(s) | 283, 1777, 2670 |
| PceI | AGGCCT | 1 cut(s) | 401 |
| PciSI | GCTCTTC | 2 cut(s) | 787, 3892 |
| PctI | GAATGC | 3 cut(s) | 1381, 2443, 2913 |
| PfeI | GAWTC | 8 cut(s) | 289, 965, 989, 1757, 1772, 2159, 2367, 2510 |
| PflFI | GACNNNGTC | 3 cut(s) | 1251, 1970, 3155 |
| PfoI | TCCNGGA | 1 cut(s) | 1353 |
| PleI | GAGTC | 5 cut(s) | 522, 572, 816, 1097, 2064 |
| PmaCI | CACGTG | 1 cut(s) | 2740 |
| PmlI | CACGTG | 1 cut(s) | 2740 |
| PpsI | GAGTC | 5 cut(s) | 522, 572, 816, 1097, 2064 |
| Ppu21I | YACGTR | 1 cut(s) | 2740 |
| PshBI | ATTAAT | 2 cut(s) | 3603, 3918 |
| PsiI | TTATAA | 2 cut(s) | 1280, 2543 |
| Psp1406I | AACGTT | 1 cut(s) | 1550 |
| PspCI | CACGTG | 1 cut(s) | 2740 |
| PspFI | CCCAGC | 1 cut(s) | 181 |
| PspN4I | GGNNCC | 5 cut(s) | 222, 1704, 1889, 2769, 2805 |
| PspPI | GGNCC | 1 cut(s) | 3272 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 865, 897 |
| PstI | CTGCAG | 1 cut(s) | 1929 |
| PstNI | CAGNNNCTG | 2 cut(s) | 152, 679 |
| PsuI | RGATCY | 6 cut(s) | 228, 695, 1637, 1961, 2643, 2803 |
| PsyI | GACNNNGTC | 3 cut(s) | 1251, 1970, 3155 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1293, 1386, 2088, 2479, 2562, 3845 |
| SapI | GCTCTTC | 2 cut(s) | 787, 3892 |
| Sau96I | GGNCC | 1 cut(s) | 3272 |
| ScaI | AGTACT | 1 cut(s) | 2037 |
| SchI | GAGTC | 5 cut(s) | 522, 572, 817, 1097, 2065 |
| SduI | GDGCHC | 3 cut(s) | 1491, 1705, 2728 |
| SexAI | ACCWGGT | 1 cut(s) | 1968 |
| SfcI | CTRYAG | 1 cut(s) | 1925 |
| Sfr274I | CTCGAG | 1 cut(s) | 3351 |
| SfuI | TTCGAA | 2 cut(s) | 2282, 2345 |
| SlaI | CTCGAG | 1 cut(s) | 3351 |
| SmiI | ATTTAAAT | 1 cut(s) | 2841 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1293, 1386, 2088, 2479, 2562, 3845 |
| SmlI | CTYRAG | 3 cut(s) | 2015, 2867, 3351 |
| SmoI | CTYRAG | 3 cut(s) | 2015, 2867, 3351 |
| SpeI | ACTAGT | 2 cut(s) | 3697, 3844 |
| SphI | GCATGC | 3 cut(s) | 553, 1163, 2945 |
| SseBI | AGGCCT | 1 cut(s) | 401 |
| SsiI | CCGC | 5 cut(s) | 189, 575, 2269, 2650, 2854 |
| SspI | AATATT | 2 cut(s) | 1410, 1575 |
| StuI | AGGCCT | 1 cut(s) | 401 |
| StyI | CCWWGG | 2 cut(s) | 1836, 3875 |
| SwaI | ATTTAAAT | 1 cut(s) | 2841 |
| TaiI | ACGT | 6 cut(s) | 41, 1553, 1993, 2742, 2791, 2990 |
| TaqI | TCGA | 9 cut(s) | 59, 105, 296, 960, 2282, 2345, 3091, 3352, 3528 |
| TaqII | GACCGA | 2 cut(s) | 282, 4089 |
| TatI | WGTACW | 5 cut(s) | 1542, 1863, 2035, 3341, 3679 |
| TauI | GCSGC | 1 cut(s) | 2857 |
| TfiI | GAWTC | 8 cut(s) | 289, 965, 989, 1757, 1772, 2159, 2367, 2510 |
| TscAI | CASTG | 6 cut(s) | 684, 1198, 1256, 2512, 3712, 3900 |
| TseFI | GTSAC | 4 cut(s) | 496, 2271, 2486, 2555 |
| TseI | GCWGC | 9 cut(s) | 904, 1322, 1391, 1430, 2192, 2245, 2441, 2732, 2879 |
| Tsp45I | GTSAC | 4 cut(s) | 496, 2271, 2486, 2555 |
| TspGWI | ACGGA | 3 cut(s) | 777, 2561, 3881 |
| TspRI | CASTG | 6 cut(s) | 684, 1198, 1256, 2512, 3712, 3900 |
| Tth111I | GACNNNGTC | 3 cut(s) | 1251, 1970, 3155 |
| Vha464I | CTTAAG | 1 cut(s) | 2867 |
| VneI | GTGCAC | 1 cut(s) | 2724 |
| VspI | ATTAAT | 2 cut(s) | 3603, 3918 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 713, 2916, 3980 |
| XapI | RAATTY | 7 cut(s) | 298, 349, 1232, 1459, 1609, 2666, 2836 |
| XceI | RCATGY | 8 cut(s) | 553, 873, 1034, 1163, 1543, 2068, 2945, 3180 |
| XhoI | CTCGAG | 1 cut(s) | 3351 |
| ZraI | GACGTC | 1 cut(s) | 39 |
| ZrmI | AGTACT | 1 cut(s) | 2037 |
| Zsp2I | ATGCAT | 2 cut(s) | 1032, 3230 |