RLG00000001782

DNA replication ATP-dependent helicase nuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002244
Physical Location & Seq
Reverse (-)
20734279 .. 20734933
655 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001782

Sequence Viewer

Length: 396 bp
ATGATGAGAGTATTGGCAGACACTTCAAGGCTGAAATCTTTAAGCATTAACCAATGCTCGCCAAACAAGACTTCTGCTGTTGAAGCTGGAAAGGTTGAGAAATCCCTATCGTCGGTGTCCCTGAATAGGGTTGGTGTGAAGAGGGTTAAACCGGATCAGGATGTGGAACATCATGGAAATGTGGTTGATAGGACTATTTCTGAAATAGCTGGTAGTCAGAGTCCATTTCGAACTCCACCTTCTTTATCATACTGTCATGATAAGCTTGCTAATGCTCTTTCATGTGATGGAGTTTCTGATGAGCCAGGGTTGAGGCAGCACAGGGCAGAAACCCTAAGCAGTAGGACATGTCAGTTCATGCTCTTCAGATTTTCTGATGGGTTTGATCACTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03030 map03030
Pfam Domains
Protein Families
AAA_11 AAA_12 Cas_Cas4 Dna2

Protein Analysis

132

Amino Acids

14.41

Weight (kDa)

8.34

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 349
AfiI CCNNNNNNNGG 3 cut(s) 112, 126, 127
AflIII ACRYGT 1 cut(s) 347
AgsI TTSAA 2 cut(s) 27, 83
AjnI CCWGG 1 cut(s) 304
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 3 cut(s) 86, 209, 265
AluI AGCT 3 cut(s) 86, 209, 265
AlwI GGATC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 316
AsuII TTCGAA 1 cut(s) 229
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 281, 371
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 385
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 335
Bpu14I TTCGAA 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 126, 127
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 112, 126, 127
BseXI GCAGC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 112, 126, 127
BsmFI GGGAC 1 cut(s) 103
Bsp119I TTCGAA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 154, 385
BspHI TCATGA 1 cut(s) 256
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 368
BspT104I TTCGAA 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 2 cut(s) 154, 385
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 254, 392
Bst6I CTCTTC 2 cut(s) 134, 368
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 59, 267
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 157, 388
BstMBI GATC 2 cut(s) 154, 385
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 304
BstV1I GCAGC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 59, 267
CciI TCATGA 1 cut(s) 256
CviAII CATG 5 cut(s) 173, 257, 282, 348, 358
CviJI RGCY 5 cut(s) 31, 86, 209, 265, 304
CviKI_1 RGCY 5 cut(s) 31, 86, 209, 265, 304
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 156, 387
DpnII GATC 2 cut(s) 154, 385
Eam1104I CTCTTC 2 cut(s) 134, 368
EarI CTCTTC 2 cut(s) 134, 368
Eco57I CTGAAG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 304
FaeI CATG 5 cut(s) 176, 260, 285, 351, 361
FaiI YATR 6 cut(s) 174, 250, 258, 283, 349, 359
FaqI GGGAC 1 cut(s) 103
FatI CATG 5 cut(s) 172, 256, 281, 347, 357
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 317
HapII CCGG 1 cut(s) 152
Hin1II CATG 5 cut(s) 176, 260, 285, 351, 361
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 1 cut(s) 220
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 5 cut(s) 202, 219, 298, 368, 376
Hpy188III TCNNGA 2 cut(s) 158, 257
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 254, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 5 cut(s) 176, 260, 285, 351, 361
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 2 cut(s) 154, 385
LguI GCTCTTC 1 cut(s) 368
LpnPI CCDG 8 cut(s) 72, 134, 143, 165, 195, 291, 307, 318
Lsp1109I GCAGC 1 cut(s) 328
MalI GATC 2 cut(s) 156, 387
MboI GATC 2 cut(s) 154, 385
MboII GAAGA 2 cut(s) 151, 355
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 2 cut(s) 135, 306
MseI TTAA 3 cut(s) 41, 48, 147
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 2 cut(s) 154, 385
NlaIII CATG 5 cut(s) 176, 260, 285, 351, 361
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 229
PagI TCATGA 1 cut(s) 256
PciI ACATGT 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 368
PkrI GCNGC 1 cut(s) 318
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PscI ACATGT 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 368
SaqAI TTAA 3 cut(s) 41, 48, 147
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 2 cut(s) 154, 385
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 306
SetI ASST 5 cut(s) 88, 96, 211, 241, 267
SfuI TTCGAA 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 254, 392
TaqI TCGA 1 cut(s) 229
Tru1I TTAA 3 cut(s) 41, 48, 147
Tru9I TTAA 3 cut(s) 41, 48, 147
TscAI CASTG 1 cut(s) 395
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 270, 346
TspRI CASTG 1 cut(s) 395
XceI RCATGY 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.