DNA replication ATP-dependent helicase nuclease
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840 |
| fragaria_vesca | FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 |
| malus_domestica | MD02G1227500.v1.1 MD07G1085900.v1.1 |
| prunus_persica | Prupe.2G112200_v2.0.a1 |
| pyrus_communis | pycom02g19640 pycom07g06880 |
| rosa_chinensis | RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971 |
| rosa_laevigata | RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987 |
| rosa_multiflora | Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00310940 |
| rosa_rugosa | Rorug01G0165900 Rorug01G0165900 |
| rosa_samantha | Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700 |
| rosa_wichuraiana | Rw1G015060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 44 |
| Acc65I | GGTACC | 1 cut(s) | 1314 |
| AccB1I | GGYRCC | 1 cut(s) | 1314 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1148 |
| AccI | GTMKAC | 2 cut(s) | 619, 978 |
| AccIII | TCCGGA | 1 cut(s) | 318 |
| AciI | CCGC | 3 cut(s) | 407, 901, 1379 |
| AclI | AACGTT | 1 cut(s) | 986 |
| AclWI | GGATC | 3 cut(s) | 933, 946, 1081 |
| AcsI | RAATTY | 1 cut(s) | 767 |
| AcuI | CTGAAG | 1 cut(s) | 1071 |
| AcyI | GRCGYC | 1 cut(s) | 41 |
| AfaI | GTAC | 3 cut(s) | 474, 1316, 1588 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 202, 216, 217, 598, 890, 1148 |
| AflIII | ACRYGT | 1 cut(s) | 1524 |
| AgsI | TTSAA | 8 cut(s) | 75, 117, 173, 428, 464, 673, 1033, 1193 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 838, 1460 |
| AjiI | CACGTC | 1 cut(s) | 1216 |
| AjnI | CCWGG | 4 cut(s) | 394, 739, 1041, 1263 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 572, 604 |
| AluBI | AGCT | 7 cut(s) | 176, 355, 548, 860, 1055, 1196, 1557 |
| AluI | AGCT | 7 cut(s) | 176, 355, 548, 860, 1055, 1196, 1557 |
| Alw21I | GWGCWC | 2 cut(s) | 643, 1559 |
| Alw26I | GTCTC | 1 cut(s) | 48 |
| AlwI | GGATC | 3 cut(s) | 933, 946, 1081 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 476 |
| Ama87I | CYCGRG | 2 cut(s) | 567, 849 |
| Aor13HI | TCCGGA | 1 cut(s) | 318 |
| AoxI | GGCC | 2 cut(s) | 404, 1446 |
| ApeKI | GCWGC | 2 cut(s) | 857, 880 |
| ApoI | RAATTY | 1 cut(s) | 767 |
| Asp718I | GGTACC | 1 cut(s) | 1314 |
| AspS9I | GGNCC | 1 cut(s) | 1261 |
| AsuC2I | CCSGG | 1 cut(s) | 1246 |
| AsuHPI | GGTGA | 8 cut(s) | 32, 40, 553, 776, 794, 815, 1099, 1195 |
| AvaI | CYCGRG | 2 cut(s) | 567, 849 |
| AvaII | GGWCC | 1 cut(s) | 1261 |
| BamHI | GGATCC | 1 cut(s) | 938 |
| BanI | GGYRCC | 1 cut(s) | 1314 |
| BanII | GRGCYC | 2 cut(s) | 1141, 1559 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 456, 488 |
| BbsI | GAAGAC | 1 cut(s) | 1331 |
| Bbv12I | GWGCWC | 2 cut(s) | 643, 1559 |
| BbvI | GCAGC | 2 cut(s) | 867, 869 |
| BccI | CCATC | 3 cut(s) | 8, 289, 1123 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 906, 940 |
| BciT130I | CCWGG | 4 cut(s) | 396, 741, 1043, 1265 |
| BclI | TGATCA | 1 cut(s) | 1360 |
| BcnI | CCSGG | 1 cut(s) | 1246 |
| BcoDI | GTCTC | 1 cut(s) | 48 |
| BglII | AGATCT | 1 cut(s) | 1388 |
| BisI | GCNGC | 3 cut(s) | 407, 858, 881 |
| BlsI | GCNGC | 3 cut(s) | 408, 859, 882 |
| Bme1390I | CCNGG | 5 cut(s) | 396, 741, 1043, 1246, 1265 |
| Bme18I | GGWCC | 1 cut(s) | 1261 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 838, 1460 |
| BmeT110I | CYCGRG | 2 cut(s) | 567, 849 |
| BmgBI | CACGTC | 1 cut(s) | 1216 |
| BmgT120I | GGNCC | 1 cut(s) | 1261 |
| BmiI | GGNNCC | 3 cut(s) | 940, 1140, 1316 |
| BmrFI | CCNGG | 5 cut(s) | 396, 741, 1043, 1246, 1265 |
| BmsI | GCATC | 6 cut(s) | 500, 581, 985, 1159, 1524, 1555 |
| BpiI | GAAGAC | 1 cut(s) | 1331 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 28, 60, 1554, 1586 |
| BpmI | CTGGAG | 3 cut(s) | 762, 1337, 1543 |
| BpuEI | CTTGAG | 1 cut(s) | 1435 |
| BpuMI | CCSGG | 1 cut(s) | 1246 |
| BsaHI | GRCGYC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 3 cut(s) | 395, 778, 1041 |
| BsaWI | WCCGGW | 2 cut(s) | 46, 318 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 735, 765 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 202, 216, 217, 598, 890, 1148 |
| Bse1I | ACTGG | 2 cut(s) | 1339, 1354 |
| Bse3DI | GCAATG | 2 cut(s) | 419, 732 |
| BseAI | TCCGGA | 1 cut(s) | 318 |
| BseBI | CCWGG | 4 cut(s) | 396, 741, 1043, 1265 |
| BseDI | CCNNGG | 3 cut(s) | 395, 778, 1041 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 202, 216, 217, 598, 890, 1148 |
| BseMI | GCAATG | 2 cut(s) | 419, 732 |
| BseMII | CTCAG | 6 cut(s) | 78, 282, 600, 656, 1068, 1098 |
| BseNI | ACTGG | 2 cut(s) | 1339, 1354 |
| BseRI | GAGGAG | 1 cut(s) | 1139 |
| BseXI | GCAGC | 2 cut(s) | 867, 869 |
| BshFI | GGCC | 2 cut(s) | 406, 1448 |
| BshNI | GGYRCC | 1 cut(s) | 1314 |
| BsiHKAI | GWGCWC | 2 cut(s) | 643, 1559 |
| BsiHKCI | CYCGRG | 2 cut(s) | 567, 849 |
| BsiSI | CCGG | 3 cut(s) | 47, 319, 1245 |
| BslFI | GGGAC | 1 cut(s) | 193 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 202, 216, 217, 598, 890, 1148 |
| BsmAI | GTCTC | 1 cut(s) | 48 |
| BsmBI | CGTCTC | 1 cut(s) | 48 |
| BsmFI | GGGAC | 1 cut(s) | 193 |
| BsnI | GGCC | 2 cut(s) | 406, 1448 |
| BsoBI | CYCGRG | 2 cut(s) | 567, 849 |
| Bsp1286I | GDGCHC | 3 cut(s) | 643, 1141, 1559 |
| Bsp13I | TCCGGA | 1 cut(s) | 318 |
| Bsp1407I | TGTACA | 1 cut(s) | 1586 |
| Bsp143I | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| BspACI | CCGC | 3 cut(s) | 407, 901, 1379 |
| BspANI | GGCC | 2 cut(s) | 406, 1448 |
| BspCNI | CTCAG | 6 cut(s) | 79, 283, 601, 655, 1069, 1099 |
| BspEI | TCCGGA | 1 cut(s) | 318 |
| BspHI | TCATGA | 2 cut(s) | 346, 964 |
| BspLI | GGNNCC | 3 cut(s) | 940, 1140, 1316 |
| BspPI | GGATC | 3 cut(s) | 933, 946, 1081 |
| BspT107I | GGYRCC | 1 cut(s) | 1314 |
| BsrDI | GCAATG | 2 cut(s) | 419, 732 |
| BsrGI | TGTACA | 1 cut(s) | 1586 |
| BsrI | ACTGG | 2 cut(s) | 1339, 1354 |
| BssECI | CCNNGG | 3 cut(s) | 395, 778, 1041 |
| BssMI | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| BssNAI | GTATAC | 1 cut(s) | 979 |
| BssNI | GRCGYC | 1 cut(s) | 41 |
| BssT1I | CCWWGG | 1 cut(s) | 778 |
| Bst1107I | GTATAC | 1 cut(s) | 979 |
| Bst2UI | CCWGG | 4 cut(s) | 396, 741, 1043, 1265 |
| Bst4CI | ACNGT | 3 cut(s) | 344, 751, 786 |
| Bst6I | CTCTTC | 2 cut(s) | 684, 1302 |
| BstACI | GRCGYC | 1 cut(s) | 41 |
| BstAUI | TGTACA | 1 cut(s) | 1586 |
| BstC8I | GCNNGC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 8 cut(s) | 87, 291, 433, 609, 642, 835, 1077, 1107 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 888 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstKTI | GATC | 6 cut(s) | 247, 439, 941, 1076, 1363, 1391 |
| BstMAI | GTCTC | 1 cut(s) | 48 |
| BstMBI | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 173, 1411 |
| BstNI | CCWGG | 4 cut(s) | 396, 741, 1043, 1265 |
| BstNSI | RCATGY | 4 cut(s) | 527, 652, 927, 1328 |
| BstSCI | CCNGG | 5 cut(s) | 394, 739, 1041, 1244, 1263 |
| BstV1I | GCAGC | 2 cut(s) | 867, 869 |
| BstV2I | GAAGAC | 1 cut(s) | 1331 |
| BstX2I | RGATCY | 3 cut(s) | 938, 1073, 1388 |
| BstYI | RGATCY | 3 cut(s) | 938, 1073, 1388 |
| BstZ17I | GTATAC | 1 cut(s) | 979 |
| BsuRI | GGCC | 2 cut(s) | 406, 1448 |
| BtrI | CACGTC | 1 cut(s) | 1216 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BtsI | GCAGTG | 1 cut(s) | 733 |
| BtsIMutI | CAGTG | 3 cut(s) | 650, 733, 791 |
| Cac8I | GCNNGC | 1 cut(s) | 149 |
| CaiI | CAGNNNCTG | 1 cut(s) | 476 |
| CciI | TCATGA | 2 cut(s) | 346, 964 |
| Cfr13I | GGNCC | 1 cut(s) | 1261 |
| Csp6I | GTAC | 3 cut(s) | 473, 1315, 1587 |
| CviQI | GTAC | 3 cut(s) | 473, 1315, 1587 |
| DdeI | CTNAG | 8 cut(s) | 87, 291, 433, 609, 642, 835, 1077, 1107 |
| DpnI | GATC | 6 cut(s) | 246, 438, 940, 1075, 1362, 1390 |
| DpnII | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| DraI | TTTAAA | 3 cut(s) | 238, 1240, 1549 |
| DriI | GACNNNNNGTC | 2 cut(s) | 838, 1460 |
| Eam1104I | CTCTTC | 2 cut(s) | 684, 1302 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 838, 1460 |
| EarI | CTCTTC | 2 cut(s) | 684, 1302 |
| Ecl136II | GAGCTC | 1 cut(s) | 1557 |
| Eco130I | CCWWGG | 1 cut(s) | 778 |
| Eco147I | AGGCCT | 1 cut(s) | 1448 |
| Eco24I | GRGCYC | 2 cut(s) | 1141, 1559 |
| Eco47I | GGWCC | 1 cut(s) | 1261 |
| Eco53kI | GAGCTC | 1 cut(s) | 1557 |
| Eco57I | CTGAAG | 1 cut(s) | 1071 |
| Eco88I | CYCGRG | 2 cut(s) | 567, 849 |
| EcoICRI | GAGCTC | 1 cut(s) | 1557 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 888 |
| EcoRII | CCWGG | 4 cut(s) | 394, 739, 1041, 1263 |
| EcoT14I | CCWWGG | 1 cut(s) | 778 |
| EcoT38I | GRGCYC | 2 cut(s) | 1141, 1559 |
| ErhI | CCWWGG | 1 cut(s) | 778 |
| Esp3I | CGTCTC | 1 cut(s) | 48 |
| FaqI | GGGAC | 1 cut(s) | 193 |
| FauI | CCCGC | 1 cut(s) | 908 |
| FbaI | TGATCA | 1 cut(s) | 1360 |
| FblI | GTMKAC | 2 cut(s) | 619, 978 |
| Fnu4HI | GCNGC | 3 cut(s) | 407, 858, 881 |
| FokI | GGATG | 1 cut(s) | 263 |
| FriOI | GRGCYC | 2 cut(s) | 1141, 1559 |
| Fsp4HI | GCNGC | 3 cut(s) | 407, 858, 881 |
| GluI | GCNGC | 3 cut(s) | 407, 858, 881 |
| GsuI | CTGGAG | 3 cut(s) | 762, 1337, 1543 |
| HaeIII | GGCC | 2 cut(s) | 406, 1448 |
| HapII | CCGG | 3 cut(s) | 47, 319, 1245 |
| Hin1I | GRCGYC | 1 cut(s) | 41 |
| HincII | GTYRAC | 1 cut(s) | 1024 |
| HindII | GTYRAC | 1 cut(s) | 1024 |
| HindIII | AAGCTT | 2 cut(s) | 353, 1053 |
| HinfI | GANTC | 6 cut(s) | 4, 310, 322, 467, 629, 1046 |
| HpaI | GTTAAC | 1 cut(s) | 1024 |
| HpaII | CCGG | 3 cut(s) | 47, 319, 1245 |
| HphI | GGTGA | 8 cut(s) | 32, 40, 553, 776, 794, 815, 1099, 1195 |
| Hpy166II | GTNNAC | 4 cut(s) | 620, 823, 979, 1024 |
| Hpy8I | GTNNAC | 4 cut(s) | 620, 823, 979, 1024 |
| HpyAV | CCTTC | 4 cut(s) | 884, 1213, 1239, 1475 |
| HpyCH4III | ACNGT | 3 cut(s) | 344, 751, 786 |
| HpyCH4IV | ACGT | 5 cut(s) | 41, 986, 1215, 1417, 1524 |
| HpyCH4V | TGCA | 8 cut(s) | 648, 726, 737, 857, 927, 1414, 1430, 1459 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 173, 1411 |
| HpyF3I | CTNAG | 8 cut(s) | 87, 291, 433, 609, 642, 835, 1077, 1107 |
| HpySE526I | ACGT | 5 cut(s) | 41, 986, 1215, 1417, 1524 |
| Hsp92I | GRCGYC | 1 cut(s) | 41 |
| Kpn2I | TCCGGA | 1 cut(s) | 318 |
| KpnI | GGTACC | 1 cut(s) | 1318 |
| Ksp22I | TGATCA | 1 cut(s) | 1360 |
| KspAI | GTTAAC | 1 cut(s) | 1024 |
| Kzo9I | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| LmnI | GCTCC | 5 cut(s) | 553, 1144, 1267, 1554, 1562 |
| Lsp1109I | GCAGC | 2 cut(s) | 867, 869 |
| LweI | GCATC | 6 cut(s) | 500, 581, 985, 1159, 1524, 1555 |
| MaeII | ACGT | 5 cut(s) | 41, 986, 1215, 1417, 1524 |
| MaeIII | GTNAC | 6 cut(s) | 28, 541, 562, 1000, 1346, 1476 |
| MalI | GATC | 6 cut(s) | 246, 438, 940, 1075, 1362, 1390 |
| MboI | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| MflI | RGATCY | 3 cut(s) | 938, 1073, 1388 |
| MhlI | GDGCHC | 3 cut(s) | 643, 1141, 1559 |
| MlyI | GAGTC | 3 cut(s) | 13, 316, 319 |
| MmeI | TCCRAC | 2 cut(s) | 575, 1287 |
| MroI | TCCGGA | 1 cut(s) | 318 |
| MslI | CAYNNNNRTG | 2 cut(s) | 828, 969 |
| MspI | CCGG | 3 cut(s) | 47, 319, 1245 |
| MspR9I | CCNGG | 5 cut(s) | 396, 741, 1043, 1246, 1265 |
| MssI | GTTTAAAC | 1 cut(s) | 238 |
| MvaI | CCWGG | 4 cut(s) | 396, 741, 1043, 1265 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 173, 1411 |
| NciI | CCSGG | 1 cut(s) | 1246 |
| NdeII | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| NlaIV | GGNNCC | 3 cut(s) | 940, 1140, 1316 |
| NmuCI | GTSAC | 4 cut(s) | 28, 541, 562, 1000 |
| NspI | RCATGY | 4 cut(s) | 527, 652, 927, 1328 |
| PagI | TCATGA | 2 cut(s) | 346, 964 |
| PceI | AGGCCT | 1 cut(s) | 1448 |
| PfeI | GAWTC | 3 cut(s) | 467, 629, 1046 |
| PflFI | GACNNNGTC | 1 cut(s) | 786 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1148 |
| PkrI | GCNGC | 3 cut(s) | 408, 859, 882 |
| PleI | GAGTC | 3 cut(s) | 12, 316, 318 |
| PmeI | GTTTAAAC | 1 cut(s) | 238 |
| PpsI | GAGTC | 3 cut(s) | 12, 316, 318 |
| Psp124BI | GAGCTC | 1 cut(s) | 1559 |
| Psp1406I | AACGTT | 1 cut(s) | 986 |
| Psp6I | CCWGG | 4 cut(s) | 394, 739, 1041, 1263 |
| PspGI | CCWGG | 4 cut(s) | 394, 739, 1041, 1263 |
| PspN4I | GGNNCC | 3 cut(s) | 940, 1140, 1316 |
| PspPI | GGNCC | 1 cut(s) | 1261 |
| PstNI | CAGNNNCTG | 1 cut(s) | 476 |
| PsuI | RGATCY | 3 cut(s) | 938, 1073, 1388 |
| PsyI | GACNNNGTC | 1 cut(s) | 786 |
| RsaI | GTAC | 3 cut(s) | 474, 1316, 1588 |
| RsaNI | GTAC | 3 cut(s) | 473, 1315, 1587 |
| RseI | CAYNNNNRTG | 2 cut(s) | 828, 969 |
| SacI | GAGCTC | 1 cut(s) | 1559 |
| SatI | GCNGC | 3 cut(s) | 407, 858, 881 |
| Sau3AI | GATC | 6 cut(s) | 244, 436, 938, 1073, 1360, 1388 |
| Sau96I | GGNCC | 1 cut(s) | 1261 |
| SchI | GAGTC | 3 cut(s) | 13, 316, 319 |
| ScrFI | CCNGG | 5 cut(s) | 396, 741, 1043, 1246, 1265 |
| SduI | GDGCHC | 3 cut(s) | 643, 1141, 1559 |
| SfaNI | GCATC | 6 cut(s) | 500, 581, 985, 1159, 1524, 1555 |
| SinI | GGWCC | 1 cut(s) | 1261 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 828, 969 |
| SmlI | CTYRAG | 1 cut(s) | 1450 |
| SmoI | CTYRAG | 1 cut(s) | 1450 |
| SseBI | AGGCCT | 1 cut(s) | 1448 |
| SsiI | CCGC | 3 cut(s) | 407, 901, 1379 |
| SspI | AATATT | 1 cut(s) | 1011 |
| SstI | GAGCTC | 1 cut(s) | 1559 |
| StuI | AGGCCT | 1 cut(s) | 1448 |
| StyD4I | CCNGG | 5 cut(s) | 394, 739, 1041, 1244, 1263 |
| StyI | CCWWGG | 1 cut(s) | 778 |
| TaaI | ACNGT | 3 cut(s) | 344, 751, 786 |
| TaiI | ACGT | 5 cut(s) | 44, 989, 1218, 1420, 1527 |
| TaqI | TCGA | 3 cut(s) | 276, 916, 1491 |
| TatI | WGTACW | 1 cut(s) | 1586 |
| TauI | GCSGC | 1 cut(s) | 409 |
| TfiI | GAWTC | 3 cut(s) | 467, 629, 1046 |
| TscAI | CASTG | 3 cut(s) | 650, 733, 791 |
| TseFI | GTSAC | 4 cut(s) | 28, 541, 562, 1000 |
| TseI | GCWGC | 2 cut(s) | 857, 880 |
| Tsp45I | GTSAC | 4 cut(s) | 28, 541, 562, 1000 |
| TspDTI | ATGAA | 9 cut(s) | 69, 360, 856, 903, 953, 981, 1047, 1221, 1518 |
| TspRI | CASTG | 3 cut(s) | 650, 733, 791 |
| Tth111I | GACNNNGTC | 1 cut(s) | 786 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1148 |
| VpaK11BI | GGWCC | 1 cut(s) | 1261 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 888 |
| XapI | RAATTY | 1 cut(s) | 767 |
| XceI | RCATGY | 4 cut(s) | 527, 652, 927, 1328 |
| XmiI | GTMKAC | 2 cut(s) | 619, 978 |
| ZraI | GACGTC | 1 cut(s) | 42 |