Rh2DG326400

DNA replication ATP-dependent helicase nuclease

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
41098573 .. 41110538
11966 bp
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UTR
Exon/CDS
Intron
Rh2DG326400.1

Sequence Viewer

Length: 1599 bp
ATGAGTCAAGACGATGGAGGTGATGAGGTGACATGGAGGACGTCTCCGGTCAATGAAAGACTTAAAGCAGTTTCAAAGCACAAGCCTGAGATGATGAGAGTATTGGCAGACACTTCAAGGCTGAAATCTTTAAGCATTAACCAATGCTCGCAAAACAAGACTTCTGCTGTTGAAGCTGGAAAGGTTGAGAAATCCCTGTCGTTGGTGTCCCTGAATAGGGTTGGCGTGAAAAGGTTTAAACCAGATCAGGATGTAGAACAAAATGGAAATGTGGTCGATAGGACTATTTCTGAGATGGCTGGTAGTCAGAGTCCATTCCGGACTCCACATTCTTTATCATACTGTCATGATAAGCTTCCTAATGCTCTTTCATGTGGTGGAGTTTCTGATGAGCCAGGGTTGAGGCCGCATAAAAAGACATTGCTTGAACTCTTAGATCAAGTAGAAGATGTTATGTTTGTTGAAGATTCAGTACCTGATGATGTGGAGGCATCTCAATTACAAGTTAAAGATAAATCAGAGCATGTTGTAAAAAGAGTGGTGACAGCTCCAACAGAACAGGTCACTCGGGCATCTTCCAATTACAATTTCCTTGTATTGGAGGTATCTGAGAATTGTAGACCTGATGATTCCTCTGGTGCTCAGTGCATGTATAAGGTTCTTCGCTTATTGAATGAGCAAAGTGGAGAAGAGTGTGCTGTGTATTTATGGGTAGAGTGGTTTTGCAGTGTCATTGCACCTGGAGATACTGTCAATGTTATTGGTGAATTTGATGACCAAGGACAGTGTCATGTGGATAATCACCATAACTTTTTAATTGTTCACCCTGATGACTTAGTGTCTGGAACTCGGGTTGCAGCTAATTTCATTTGTCATAGGCTGCCTTATGAAGGAGAAACCCGCAATTACTTTCTTCGAGGAACATGCAAAGAATGGGGATCCAGAGAAACATTGAGAACTTTTCATGAAAATGATGTATACAAAACGTTGGTTGATGCTGTCACAAAAATATTAAATTGGGTTAACATCTTCAAAAACACCCAGGATTCTGAAGCTTCATCTGTTGATTTTGGATCTGAGAATGGGGTGAAAAAAGTCGCAATATCTGAGGTAATTGATATTGAGGAGATGGCATGGGCTCCAAAATATGGTCTAAAAGGTATGATTGATGCTTCTGTCAGGGTGAAAGTTGAAGCTAACAAAAATGAACCTGACGTGAAGGTTATGCCTTCGGAGTTTAAAACCGGGAAAGTGCCAAAGGACCAGGAGCATACTGCCCAAGTAATCTTATACACTCTTCTTATGTCGGAGAGGTACCAAAAGCATGTTGATACTGGTCTTCTATGTTACCTCCAGTCTGATCAGACACAGGGAATTGCGGTTAGAAGATCTGACATTGTTGGGCTAATCGTGCAACGTAATCAACTTGCAAATGATATTGTCAAGGCCTCAAGACTGCAAGTCCTTCCCCCAATGTTACGGGTTCTTATCGAGAAAGTTGATGAACAATCAGGCATCTTAAACGTGTCCAAGAAAGACATTAACTTTAAAGGGAGCTCCAGAGATGCTCTCATGTCAGATAATTGTACATTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

59.52

Weight (kDa)

5.51

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dna2 PF08696 226 - 293 3.1e-18 DNA replication factor Dna2
Dna2 PF08696 322 - 395 1.3e-15 DNA replication factor Dna2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 44
Acc65I GGTACC 1 cut(s) 1314
AccB1I GGYRCC 1 cut(s) 1314
AccB7I CCANNNNNTGG 1 cut(s) 1148
AccI GTMKAC 2 cut(s) 619, 978
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 3 cut(s) 407, 901, 1379
AclI AACGTT 1 cut(s) 986
AclWI GGATC 3 cut(s) 933, 946, 1081
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 1071
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 3 cut(s) 474, 1316, 1588
AfiI CCNNNNNNNGG 6 cut(s) 202, 216, 217, 598, 890, 1148
AflIII ACRYGT 1 cut(s) 1524
AgsI TTSAA 8 cut(s) 75, 117, 173, 428, 464, 673, 1033, 1193
AhdI GACNNNNNGTC 2 cut(s) 838, 1460
AjiI CACGTC 1 cut(s) 1216
AjnI CCWGG 4 cut(s) 394, 739, 1041, 1263
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 7 cut(s) 176, 355, 548, 860, 1055, 1196, 1557
AluI AGCT 7 cut(s) 176, 355, 548, 860, 1055, 1196, 1557
Alw21I GWGCWC 2 cut(s) 643, 1559
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 3 cut(s) 933, 946, 1081
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 2 cut(s) 567, 849
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 2 cut(s) 404, 1446
ApeKI GCWGC 2 cut(s) 857, 880
ApoI RAATTY 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 1314
AspS9I GGNCC 1 cut(s) 1261
AsuC2I CCSGG 1 cut(s) 1246
AsuHPI GGTGA 8 cut(s) 32, 40, 553, 776, 794, 815, 1099, 1195
AvaI CYCGRG 2 cut(s) 567, 849
AvaII GGWCC 1 cut(s) 1261
BamHI GGATCC 1 cut(s) 938
BanI GGYRCC 1 cut(s) 1314
BanII GRGCYC 2 cut(s) 1141, 1559
BarI GAAGNNNNNNTAC 2 cut(s) 456, 488
BbsI GAAGAC 1 cut(s) 1331
Bbv12I GWGCWC 2 cut(s) 643, 1559
BbvI GCAGC 2 cut(s) 867, 869
BccI CCATC 3 cut(s) 8, 289, 1123
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BciT130I CCWGG 4 cut(s) 396, 741, 1043, 1265
BclI TGATCA 1 cut(s) 1360
BcnI CCSGG 1 cut(s) 1246
BcoDI GTCTC 1 cut(s) 48
BglII AGATCT 1 cut(s) 1388
BisI GCNGC 3 cut(s) 407, 858, 881
BlsI GCNGC 3 cut(s) 408, 859, 882
Bme1390I CCNGG 5 cut(s) 396, 741, 1043, 1246, 1265
Bme18I GGWCC 1 cut(s) 1261
BmeRI GACNNNNNGTC 2 cut(s) 838, 1460
BmeT110I CYCGRG 2 cut(s) 567, 849
BmgBI CACGTC 1 cut(s) 1216
BmgT120I GGNCC 1 cut(s) 1261
BmiI GGNNCC 3 cut(s) 940, 1140, 1316
BmrFI CCNGG 5 cut(s) 396, 741, 1043, 1246, 1265
BmsI GCATC 6 cut(s) 500, 581, 985, 1159, 1524, 1555
BpiI GAAGAC 1 cut(s) 1331
BplI GAGNNNNNCTC 4 cut(s) 28, 60, 1554, 1586
BpmI CTGGAG 3 cut(s) 762, 1337, 1543
BpuEI CTTGAG 1 cut(s) 1435
BpuMI CCSGG 1 cut(s) 1246
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 395, 778, 1041
BsaWI WCCGGW 2 cut(s) 46, 318
BsaXI ACNNNNNCTCC 2 cut(s) 735, 765
Bsc4I CCNNNNNNNGG 6 cut(s) 202, 216, 217, 598, 890, 1148
Bse1I ACTGG 2 cut(s) 1339, 1354
Bse3DI GCAATG 2 cut(s) 419, 732
BseAI TCCGGA 1 cut(s) 318
BseBI CCWGG 4 cut(s) 396, 741, 1043, 1265
BseDI CCNNGG 3 cut(s) 395, 778, 1041
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 6 cut(s) 202, 216, 217, 598, 890, 1148
BseMI GCAATG 2 cut(s) 419, 732
BseMII CTCAG 6 cut(s) 78, 282, 600, 656, 1068, 1098
BseNI ACTGG 2 cut(s) 1339, 1354
BseRI GAGGAG 1 cut(s) 1139
BseXI GCAGC 2 cut(s) 867, 869
BshFI GGCC 2 cut(s) 406, 1448
BshNI GGYRCC 1 cut(s) 1314
BsiHKAI GWGCWC 2 cut(s) 643, 1559
BsiHKCI CYCGRG 2 cut(s) 567, 849
BsiSI CCGG 3 cut(s) 47, 319, 1245
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 6 cut(s) 202, 216, 217, 598, 890, 1148
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 193
BsnI GGCC 2 cut(s) 406, 1448
BsoBI CYCGRG 2 cut(s) 567, 849
Bsp1286I GDGCHC 3 cut(s) 643, 1141, 1559
Bsp13I TCCGGA 1 cut(s) 318
Bsp1407I TGTACA 1 cut(s) 1586
Bsp143I GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
BspACI CCGC 3 cut(s) 407, 901, 1379
BspANI GGCC 2 cut(s) 406, 1448
BspCNI CTCAG 6 cut(s) 79, 283, 601, 655, 1069, 1099
BspEI TCCGGA 1 cut(s) 318
BspHI TCATGA 2 cut(s) 346, 964
BspLI GGNNCC 3 cut(s) 940, 1140, 1316
BspPI GGATC 3 cut(s) 933, 946, 1081
BspT107I GGYRCC 1 cut(s) 1314
BsrDI GCAATG 2 cut(s) 419, 732
BsrGI TGTACA 1 cut(s) 1586
BsrI ACTGG 2 cut(s) 1339, 1354
BssECI CCNNGG 3 cut(s) 395, 778, 1041
BssMI GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
BssNAI GTATAC 1 cut(s) 979
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 979
Bst2UI CCWGG 4 cut(s) 396, 741, 1043, 1265
Bst4CI ACNGT 3 cut(s) 344, 751, 786
Bst6I CTCTTC 2 cut(s) 684, 1302
BstACI GRCGYC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 1586
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 8 cut(s) 87, 291, 433, 609, 642, 835, 1077, 1107
BstENI CCTNNNNNAGG 1 cut(s) 888
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 6 cut(s) 247, 439, 941, 1076, 1363, 1391
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
BstMWI GCNNNNNNNGC 2 cut(s) 173, 1411
BstNI CCWGG 4 cut(s) 396, 741, 1043, 1265
BstNSI RCATGY 4 cut(s) 527, 652, 927, 1328
BstSCI CCNGG 5 cut(s) 394, 739, 1041, 1244, 1263
BstV1I GCAGC 2 cut(s) 867, 869
BstV2I GAAGAC 1 cut(s) 1331
BstX2I RGATCY 3 cut(s) 938, 1073, 1388
BstYI RGATCY 3 cut(s) 938, 1073, 1388
BstZ17I GTATAC 1 cut(s) 979
BsuRI GGCC 2 cut(s) 406, 1448
BtrI CACGTC 1 cut(s) 1216
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 733
BtsIMutI CAGTG 3 cut(s) 650, 733, 791
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 476
CciI TCATGA 2 cut(s) 346, 964
Cfr13I GGNCC 1 cut(s) 1261
Csp6I GTAC 3 cut(s) 473, 1315, 1587
CviQI GTAC 3 cut(s) 473, 1315, 1587
DdeI CTNAG 8 cut(s) 87, 291, 433, 609, 642, 835, 1077, 1107
DpnI GATC 6 cut(s) 246, 438, 940, 1075, 1362, 1390
DpnII GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
DraI TTTAAA 3 cut(s) 238, 1240, 1549
DriI GACNNNNNGTC 2 cut(s) 838, 1460
Eam1104I CTCTTC 2 cut(s) 684, 1302
Eam1105I GACNNNNNGTC 2 cut(s) 838, 1460
EarI CTCTTC 2 cut(s) 684, 1302
Ecl136II GAGCTC 1 cut(s) 1557
Eco130I CCWWGG 1 cut(s) 778
Eco147I AGGCCT 1 cut(s) 1448
Eco24I GRGCYC 2 cut(s) 1141, 1559
Eco47I GGWCC 1 cut(s) 1261
Eco53kI GAGCTC 1 cut(s) 1557
Eco57I CTGAAG 1 cut(s) 1071
Eco88I CYCGRG 2 cut(s) 567, 849
EcoICRI GAGCTC 1 cut(s) 1557
EcoNI CCTNNNNNAGG 1 cut(s) 888
EcoRII CCWGG 4 cut(s) 394, 739, 1041, 1263
EcoT14I CCWWGG 1 cut(s) 778
EcoT38I GRGCYC 2 cut(s) 1141, 1559
ErhI CCWWGG 1 cut(s) 778
Esp3I CGTCTC 1 cut(s) 48
FaqI GGGAC 1 cut(s) 193
FauI CCCGC 1 cut(s) 908
FbaI TGATCA 1 cut(s) 1360
FblI GTMKAC 2 cut(s) 619, 978
Fnu4HI GCNGC 3 cut(s) 407, 858, 881
FokI GGATG 1 cut(s) 263
FriOI GRGCYC 2 cut(s) 1141, 1559
Fsp4HI GCNGC 3 cut(s) 407, 858, 881
GluI GCNGC 3 cut(s) 407, 858, 881
GsuI CTGGAG 3 cut(s) 762, 1337, 1543
HaeIII GGCC 2 cut(s) 406, 1448
HapII CCGG 3 cut(s) 47, 319, 1245
Hin1I GRCGYC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 2 cut(s) 353, 1053
HinfI GANTC 6 cut(s) 4, 310, 322, 467, 629, 1046
HpaI GTTAAC 1 cut(s) 1024
HpaII CCGG 3 cut(s) 47, 319, 1245
HphI GGTGA 8 cut(s) 32, 40, 553, 776, 794, 815, 1099, 1195
Hpy166II GTNNAC 4 cut(s) 620, 823, 979, 1024
Hpy8I GTNNAC 4 cut(s) 620, 823, 979, 1024
HpyAV CCTTC 4 cut(s) 884, 1213, 1239, 1475
HpyCH4III ACNGT 3 cut(s) 344, 751, 786
HpyCH4IV ACGT 5 cut(s) 41, 986, 1215, 1417, 1524
HpyCH4V TGCA 8 cut(s) 648, 726, 737, 857, 927, 1414, 1430, 1459
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 1411
HpyF3I CTNAG 8 cut(s) 87, 291, 433, 609, 642, 835, 1077, 1107
HpySE526I ACGT 5 cut(s) 41, 986, 1215, 1417, 1524
Hsp92I GRCGYC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 318
KpnI GGTACC 1 cut(s) 1318
Ksp22I TGATCA 1 cut(s) 1360
KspAI GTTAAC 1 cut(s) 1024
Kzo9I GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
LmnI GCTCC 5 cut(s) 553, 1144, 1267, 1554, 1562
Lsp1109I GCAGC 2 cut(s) 867, 869
LweI GCATC 6 cut(s) 500, 581, 985, 1159, 1524, 1555
MaeII ACGT 5 cut(s) 41, 986, 1215, 1417, 1524
MaeIII GTNAC 6 cut(s) 28, 541, 562, 1000, 1346, 1476
MalI GATC 6 cut(s) 246, 438, 940, 1075, 1362, 1390
MboI GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
MflI RGATCY 3 cut(s) 938, 1073, 1388
MhlI GDGCHC 3 cut(s) 643, 1141, 1559
MlyI GAGTC 3 cut(s) 13, 316, 319
MmeI TCCRAC 2 cut(s) 575, 1287
MroI TCCGGA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 828, 969
MspI CCGG 3 cut(s) 47, 319, 1245
MspR9I CCNGG 5 cut(s) 396, 741, 1043, 1246, 1265
MssI GTTTAAAC 1 cut(s) 238
MvaI CCWGG 4 cut(s) 396, 741, 1043, 1265
MwoI GCNNNNNNNGC 2 cut(s) 173, 1411
NciI CCSGG 1 cut(s) 1246
NdeII GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
NlaIV GGNNCC 3 cut(s) 940, 1140, 1316
NmuCI GTSAC 4 cut(s) 28, 541, 562, 1000
NspI RCATGY 4 cut(s) 527, 652, 927, 1328
PagI TCATGA 2 cut(s) 346, 964
PceI AGGCCT 1 cut(s) 1448
PfeI GAWTC 3 cut(s) 467, 629, 1046
PflFI GACNNNGTC 1 cut(s) 786
PflMI CCANNNNNTGG 1 cut(s) 1148
PkrI GCNGC 3 cut(s) 408, 859, 882
PleI GAGTC 3 cut(s) 12, 316, 318
PmeI GTTTAAAC 1 cut(s) 238
PpsI GAGTC 3 cut(s) 12, 316, 318
Psp124BI GAGCTC 1 cut(s) 1559
Psp1406I AACGTT 1 cut(s) 986
Psp6I CCWGG 4 cut(s) 394, 739, 1041, 1263
PspGI CCWGG 4 cut(s) 394, 739, 1041, 1263
PspN4I GGNNCC 3 cut(s) 940, 1140, 1316
PspPI GGNCC 1 cut(s) 1261
PstNI CAGNNNCTG 1 cut(s) 476
PsuI RGATCY 3 cut(s) 938, 1073, 1388
PsyI GACNNNGTC 1 cut(s) 786
RsaI GTAC 3 cut(s) 474, 1316, 1588
RsaNI GTAC 3 cut(s) 473, 1315, 1587
RseI CAYNNNNRTG 2 cut(s) 828, 969
SacI GAGCTC 1 cut(s) 1559
SatI GCNGC 3 cut(s) 407, 858, 881
Sau3AI GATC 6 cut(s) 244, 436, 938, 1073, 1360, 1388
Sau96I GGNCC 1 cut(s) 1261
SchI GAGTC 3 cut(s) 13, 316, 319
ScrFI CCNGG 5 cut(s) 396, 741, 1043, 1246, 1265
SduI GDGCHC 3 cut(s) 643, 1141, 1559
SfaNI GCATC 6 cut(s) 500, 581, 985, 1159, 1524, 1555
SinI GGWCC 1 cut(s) 1261
SmiMI CAYNNNNRTG 2 cut(s) 828, 969
SmlI CTYRAG 1 cut(s) 1450
SmoI CTYRAG 1 cut(s) 1450
SseBI AGGCCT 1 cut(s) 1448
SsiI CCGC 3 cut(s) 407, 901, 1379
SspI AATATT 1 cut(s) 1011
SstI GAGCTC 1 cut(s) 1559
StuI AGGCCT 1 cut(s) 1448
StyD4I CCNGG 5 cut(s) 394, 739, 1041, 1244, 1263
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 3 cut(s) 344, 751, 786
TaiI ACGT 5 cut(s) 44, 989, 1218, 1420, 1527
TaqI TCGA 3 cut(s) 276, 916, 1491
TatI WGTACW 1 cut(s) 1586
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 3 cut(s) 467, 629, 1046
TscAI CASTG 3 cut(s) 650, 733, 791
TseFI GTSAC 4 cut(s) 28, 541, 562, 1000
TseI GCWGC 2 cut(s) 857, 880
Tsp45I GTSAC 4 cut(s) 28, 541, 562, 1000
TspDTI ATGAA 9 cut(s) 69, 360, 856, 903, 953, 981, 1047, 1221, 1518
TspRI CASTG 3 cut(s) 650, 733, 791
Tth111I GACNNNGTC 1 cut(s) 786
Van91I CCANNNNNTGG 1 cut(s) 1148
VpaK11BI GGWCC 1 cut(s) 1261
XagI CCTNNNNNAGG 1 cut(s) 888
XapI RAATTY 1 cut(s) 767
XceI RCATGY 4 cut(s) 527, 652, 927, 1328
XmiI GTMKAC 2 cut(s) 619, 978
ZraI GACGTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.