Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002244

Physical Location & Seq

Genomic Coordinates Forward (+)

17591007 .. 17592091

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19640.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCAATTTTCATGTGTTTTAAAACTTTGTTGCAGCGTTGGTTTGTTTGTCCCTTGGTTGTTCAGTATAATCACTTTTTGCAATGTAGATTCTTTACCTGCTTTTGAGGAAAAGGATCACAAGATTGTGAGTAACCCGACAGAAGCTAACGTAATTGTACAGGTTGTGGAGGGACTAGTCAAGAGTGGAATAAAGGGGGAAGATATCGGTGTCAGTACCCCATATAACTCCCAGGCAGATATCATCCGGCTTGACCTCAACCGCCTGACCTCTGTCAAGATACATACCATTGACAAATACCAGATCCGGTTGAAGGATTCACTTTCTACGCTGATGTTATTAGACAAGGATTGTATACTAGTGTCCTTTGTTAGGTCAATGGAAAATCCAACGAATTGCTCCTCCTCGCTGCTCCGAGACTGGCATAGGATTAATGTCGCTCTCACTCGTGCCAAGAAAAAAATGATAATGGTTGGATCGCGCAAGACCCTATCGAATGTTGTGCTGATGAAACTTCTTATCGAGCAAGTTGAACAGCAGTCGGGCATCTTAAATGTATCGAACAAGGATATTAAGTTTAACAGCGAGTTAAGGGGATGCTCTCAGGCTCAGGTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

AAA_11 AAA_12 Cas_Cas4 Dna2

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

8.98

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840
fragaria_vesca	FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480
malus_domestica	MD02G1227500.v1.1 MD07G1085900.v1.1
prunus_persica	Prupe.2G112200_v2.0.a1
pyrus_communis	pycom02g19640 pycom07g06880
rosa_chinensis	RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971
rosa_laevigata	RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987
rosa_multiflora	Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005
rosa_roxburghii	Rroxscaffold_4G00310940
rosa_rugosa	Rorug01G0165900 Rorug01G0165900
rosa_samantha	Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700
rosa_wichuraiana	Rw1G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	481
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	3 cut(s)	123, 298, 484
AfaI	GTAC	2 cut(s)	159, 217
AfiI	CCNNNNNNNGG	2 cut(s)	313, 372
AgsI	TTSAA	2 cut(s)	313, 533
AhlI	ACTAGT	2 cut(s)	175, 358
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	3 cut(s)	123, 298, 484
ApeKI	GCWGC	2 cut(s)	33, 409
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	483
BauI	CACGAG	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	45, 396
BcgI	CGANNNNNNTGC	2 cut(s)	484, 518
BciT130I	CCWGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	411
BcuI	ACTAGT	2 cut(s)	175, 358
BfaI	CTAG	2 cut(s)	176, 359
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	2 cut(s)	34, 410
BlsI	GCNGC	2 cut(s)	35, 411
Bme1390I	CCNGG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	555, 587
BoxI	GACNNNNGTC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	53, 231
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 372
Bse1I	ACTGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	53, 231
BseGI	GGATG	2 cut(s)	243, 602
BseLI	CCNNNNNNNGG	2 cut(s)	313, 372
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	425
BseRI	GAGGAG	2 cut(s)	391, 394
BseXI	GCAGC	2 cut(s)	45, 396
Bsh1236I	CGCG	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	247, 307
BslFI	GGGAC	2 cut(s)	35, 186
BslI	CCNNNNNNNGG	2 cut(s)	313, 372
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	2 cut(s)	35, 186
Bsp1407I	TGTACA	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	115, 303, 476
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	106
BspPI	GGATC	3 cut(s)	123, 298, 484
BsrDI	GCAATG	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	53, 231
BssMI	GATC	3 cut(s)	115, 303, 476
BssNAI	GTATAC	1 cut(s)	356
BssSI	CACGAG	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	603, 609
BstENI	CCTNNNNNAGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	243, 602
BstFNI	CGCG	1 cut(s)	481
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	3 cut(s)	118, 306, 479
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	3 cut(s)	115, 303, 476
BstNI	CCWGG	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	231
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	45, 396
BstX2I	RGATCY	1 cut(s)	303
BstYI	RGATCY	1 cut(s)	303
BstZ17I	GTATAC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	243, 602
BveI	ACCTGC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	483
Csp6I	GTAC	2 cut(s)	158, 216
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	3 cut(s)	146, 250, 608
CviKI_1	RGCY	3 cut(s)	146, 250, 608
CviQI	GTAC	2 cut(s)	158, 216
DdeI	CTNAG	2 cut(s)	603, 609
DpnI	GATC	3 cut(s)	117, 305, 478
DpnII	GATC	3 cut(s)	115, 303, 476
DraI	TTTAAA	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	53
Eco32I	GATATC	2 cut(s)	205, 241
EcoNI	CCTNNNNNAGG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	2 cut(s)	205, 241
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	15
FaiI	YATR	7 cut(s)	13, 68, 223, 225, 285, 356, 426
FaqI	GGGAC	2 cut(s)	35, 186
FatI	CATG	1 cut(s)	11
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	34, 410
FokI	GGATG	2 cut(s)	230, 609
Fsp4HI	GCNGC	2 cut(s)	34, 410
FspBI	CTAG	2 cut(s)	176, 359
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	34, 410
HapII	CCGG	2 cut(s)	247, 307
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	2 cut(s)	89, 317
HpaII	CCGG	2 cut(s)	247, 307
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	416, 617
Hpy188III	TCNNGA	2 cut(s)	181, 277
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	307
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	4, 33, 81
HpyF3I	CTNAG	2 cut(s)	603, 609
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	115, 303, 476
LmnI	GCTCC	2 cut(s)	404, 417
Lsp1109I	GCAGC	2 cut(s)	45, 396
LweI	GCATC	2 cut(s)	555, 587
MaeI	CTAG	2 cut(s)	176, 359
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	117, 305, 478
MboI	GATC	3 cut(s)	115, 303, 476
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	303
MluCI	AATT	3 cut(s)	5, 153, 394
MmeI	TCCRAC	2 cut(s)	413, 454
MnlI	CCTC	6 cut(s)	100, 163, 266, 280, 412, 415
MseI	TTAA	6 cut(s)	20, 432, 551, 573, 579, 590
MspI	CCGG	2 cut(s)	247, 307
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	481
NdeII	GATC	3 cut(s)	115, 303, 476
NlaIII	CATG	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	89, 317
PkrI	GCNGC	2 cut(s)	35, 411
PshAI	GACNNNNGTC	1 cut(s)	272
PshBI	ATTAAT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	303
RsaI	GTAC	2 cut(s)	159, 217
RsaNI	GTAC	2 cut(s)	158, 216
SaqAI	TTAA	6 cut(s)	20, 432, 551, 573, 579, 590
SatI	GCNGC	2 cut(s)	34, 410
Sau3AI	GATC	3 cut(s)	115, 303, 476
ScrFI	CCNGG	1 cut(s)	233
SetI	ASST	8 cut(s)	100, 148, 153, 165, 258, 272, 377, 615
SfaNI	GCATC	2 cut(s)	555, 587
SpeI	ACTAGT	2 cut(s)	175, 358
Sse9I	AATT	3 cut(s)	5, 153, 394
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	176, 359
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	494, 522, 560
TasI	AATT	3 cut(s)	5, 153, 394
TatI	WGTACW	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	89, 317
Tru1I	TTAA	6 cut(s)	20, 432, 551, 573, 579, 590
Tru9I	TTAA	6 cut(s)	20, 432, 551, 573, 579, 590
TseI	GCWGC	2 cut(s)	33, 409
TspDTI	ATGAA	1 cut(s)	524
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	2 cut(s)	176, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.