DNA replication ATP-dependent helicase nuclease
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840 |
| fragaria_vesca | FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 |
| malus_domestica | MD02G1227500.v1.1 MD07G1085900.v1.1 |
| prunus_persica | Prupe.2G112200_v2.0.a1 |
| pyrus_communis | pycom02g19640 pycom07g06880 |
| rosa_chinensis | RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971 |
| rosa_laevigata | RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987 |
| rosa_multiflora | Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00310940 |
| rosa_rugosa | Rorug01G0165900 Rorug01G0165900 |
| rosa_samantha | Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700 |
| rosa_wichuraiana | Rw1G015060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 104 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 473 |
| Acc65I | GGTACC | 1 cut(s) | 711 |
| AccB1I | GGYRCC | 1 cut(s) | 711 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 536 |
| AciI | CCGC | 4 cut(s) | 894, 904, 963, 1093 |
| AclWI | GGATC | 5 cut(s) | 92, 469, 1367, 1619, 1632 |
| AcsI | RAATTY | 5 cut(s) | 55, 424, 1086, 1216, 1657 |
| AcuI | CTGAAG | 2 cut(s) | 1422, 1442 |
| AcyI | GRCGYC | 1 cut(s) | 474 |
| AdeI | CACNNNGTG | 1 cut(s) | 224 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 536, 703, 1462, 1644, 1740 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1606 |
| AjnI | CCWGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| AleI | CACNNNNGTG | 1 cut(s) | 1758 |
| AluBI | AGCT | 9 cut(s) | 149, 153, 443, 1058, 1072, 1104, 1553, 1589, 1776 |
| AluI | AGCT | 9 cut(s) | 149, 153, 443, 1058, 1072, 1104, 1553, 1589, 1776 |
| Alw21I | GWGCWC | 1 cut(s) | 315 |
| Alw26I | GTCTC | 2 cut(s) | 740, 1614 |
| AlwI | GGATC | 5 cut(s) | 92, 469, 1367, 1619, 1632 |
| AoxI | GGCC | 3 cut(s) | 519, 547, 649 |
| ApeKI | GCWGC | 5 cut(s) | 215, 960, 1069, 1326, 1553 |
| ApoI | RAATTY | 5 cut(s) | 55, 424, 1086, 1216, 1657 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 638, 670 |
| Asp718I | GGTACC | 1 cut(s) | 711 |
| AspA2I | CCTAGG | 2 cut(s) | 164, 1592 |
| AspLEI | GCGC | 1 cut(s) | 1265 |
| AspS9I | GGNCC | 2 cut(s) | 649, 1647 |
| AsuHPI | GGTGA | 4 cut(s) | 605, 1166, 1319, 1550 |
| AsuNHI | GCTAGC | 1 cut(s) | 149 |
| AvaII | GGWCC | 1 cut(s) | 1647 |
| AvrII | CCTAGG | 2 cut(s) | 164, 1592 |
| AxyI | CCTNAGG | 1 cut(s) | 1025 |
| BaeGI | GKGCMC | 1 cut(s) | 676 |
| BamHI | GGATCC | 1 cut(s) | 1624 |
| BanI | GGYRCC | 1 cut(s) | 711 |
| BanII | GRGCYC | 1 cut(s) | 529 |
| Bbv12I | GWGCWC | 1 cut(s) | 315 |
| BbvI | GCAGC | 5 cut(s) | 227, 972, 1081, 1338, 1540 |
| BccI | CCATC | 4 cut(s) | 511, 915, 1031, 1145 |
| BciT130I | CCWGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| BcoDI | GTCTC | 2 cut(s) | 740, 1614 |
| BfaI | CTAG | 7 cut(s) | 138, 150, 165, 780, 1583, 1593, 1725 |
| BfmI | CTRYAG | 3 cut(s) | 213, 276, 749 |
| BfoI | RGCGCY | 1 cut(s) | 1266 |
| BglII | AGATCT | 1 cut(s) | 785 |
| BisI | GCNGC | 6 cut(s) | 216, 904, 961, 1070, 1327, 1554 |
| BlnI | CCTAGG | 2 cut(s) | 164, 1592 |
| BlsI | GCNGC | 6 cut(s) | 217, 905, 962, 1071, 1328, 1555 |
| BmcAI | AGTACT | 1 cut(s) | 861 |
| Bme1390I | CCNGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| Bme18I | GGWCC | 1 cut(s) | 1647 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1606 |
| BmgT120I | GGNCC | 2 cut(s) | 649, 1647 |
| BmiI | GGNNCC | 4 cut(s) | 528, 713, 1626, 1649 |
| BmrFI | CCNGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| BmsI | GCATC | 5 cut(s) | 247, 547, 854, 1056, 1181 |
| BmtI | GCTAGC | 1 cut(s) | 153 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1672, 1704 |
| BpmI | CTGGAG | 2 cut(s) | 50, 299 |
| BpuEI | CTTGAG | 3 cut(s) | 347, 824, 1674 |
| Bsa29I | ATCGAT | 2 cut(s) | 87, 1669 |
| BsaHI | GRCGYC | 1 cut(s) | 474 |
| BsaI | GGTCTC | 2 cut(s) | 740, 1614 |
| BsaJI | CCNNGG | 8 cut(s) | 66, 164, 429, 430, 522, 1421, 1592, 1756 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 23, 53 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 536, 703, 1462, 1644, 1740 |
| Bse1I | ACTGG | 4 cut(s) | 652, 736, 1129, 1266 |
| Bse21I | CCTNAGG | 1 cut(s) | 1025 |
| Bse3DI | GCAATG | 1 cut(s) | 20 |
| BseBI | CCWGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| BseCI | ATCGAT | 2 cut(s) | 87, 1669 |
| BseDI | CCNNGG | 8 cut(s) | 66, 164, 429, 430, 522, 1421, 1592, 1756 |
| BseGI | GGATG | 5 cut(s) | 112, 187, 1042, 1172, 1749 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 536, 703, 1462, 1644, 1740 |
| BseMI | GCAATG | 1 cut(s) | 20 |
| BseMII | CTCAG | 2 cut(s) | 486, 1007 |
| BseNI | ACTGG | 4 cut(s) | 652, 736, 1129, 1266 |
| BseRI | GAGGAG | 2 cut(s) | 527, 686 |
| BseSI | GKGCMC | 1 cut(s) | 676 |
| BseXI | GCAGC | 5 cut(s) | 227, 972, 1081, 1338, 1540 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1097 |
| BshFI | GGCC | 3 cut(s) | 521, 549, 651 |
| BshNI | GGYRCC | 1 cut(s) | 711 |
| BshVI | ATCGAT | 2 cut(s) | 87, 1669 |
| BsiEI | CGRYCG | 1 cut(s) | 1097 |
| BsiHKAI | GWGCWC | 1 cut(s) | 315 |
| BslFI | GGGAC | 2 cut(s) | 374, 1633 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 536, 703, 1462, 1644, 1740 |
| BsmAI | GTCTC | 2 cut(s) | 740, 1614 |
| BsmFI | GGGAC | 2 cut(s) | 374, 1633 |
| BsmI | GAATGC | 2 cut(s) | 205, 1735 |
| BsnI | GGCC | 3 cut(s) | 521, 549, 651 |
| Bso31I | GGTCTC | 2 cut(s) | 740, 1614 |
| Bsp1286I | GDGCHC | 3 cut(s) | 315, 529, 676 |
| Bsp1407I | TGTACA | 3 cut(s) | 11, 366, 1292 |
| Bsp19I | CCATGG | 1 cut(s) | 1756 |
| BspACI | CCGC | 4 cut(s) | 894, 904, 963, 1093 |
| BspANI | GGCC | 3 cut(s) | 521, 549, 651 |
| BspCNI | CTCAG | 2 cut(s) | 487, 1006 |
| BspDI | ATCGAT | 2 cut(s) | 87, 1669 |
| BspHI | TCATGA | 1 cut(s) | 601 |
| BspLI | GGNNCC | 4 cut(s) | 528, 713, 1626, 1649 |
| BspMAI | CTGCAG | 2 cut(s) | 217, 753 |
| BspOI | GCTAGC | 1 cut(s) | 153 |
| BspPI | GGATC | 5 cut(s) | 92, 469, 1367, 1619, 1632 |
| BspT107I | GGYRCC | 1 cut(s) | 711 |
| BspTNI | GGTCTC | 2 cut(s) | 740, 1614 |
| BsrDI | GCAATG | 1 cut(s) | 20 |
| BsrGI | TGTACA | 3 cut(s) | 11, 366, 1292 |
| BsrI | ACTGG | 4 cut(s) | 652, 736, 1129, 1266 |
| BssECI | CCNNGG | 8 cut(s) | 66, 164, 429, 430, 522, 1421, 1592, 1756 |
| BssNI | GRCGYC | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 5 cut(s) | 66, 164, 1421, 1592, 1756 |
| Bst2UI | CCWGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| Bst4CI | ACNGT | 9 cut(s) | 16, 74, 175, 280, 310, 590, 879, 925, 1292 |
| Bst6I | CTCTTC | 1 cut(s) | 422 |
| BstACI | GRCGYC | 1 cut(s) | 474 |
| BstAUI | TGTACA | 3 cut(s) | 11, 366, 1292 |
| BstC8I | GCNNGC | 2 cut(s) | 151, 1765 |
| BstDEI | CTNAG | 9 cut(s) | 221, 495, 619, 993, 1025, 1322, 1404, 1562, 1616 |
| BstDSI | CCRYGG | 1 cut(s) | 1756 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| BstF5I | GGATG | 5 cut(s) | 112, 187, 1042, 1172, 1749 |
| BstH2I | RGCGCY | 1 cut(s) | 1266 |
| BstHHI | GCGC | 1 cut(s) | 1265 |
| BstMAI | GTCTC | 2 cut(s) | 740, 1614 |
| BstMCI | CGRYCG | 1 cut(s) | 1097 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 159, 900, 957, 1773 |
| BstNI | CCWGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| BstNSI | RCATGY | 2 cut(s) | 725, 1767 |
| BstSCI | CCNGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| BstSFI | CTRYAG | 3 cut(s) | 213, 276, 749 |
| BstSLI | GKGCMC | 1 cut(s) | 676 |
| BstV1I | GCAGC | 5 cut(s) | 227, 972, 1081, 1338, 1540 |
| BstX2I | RGATCY | 3 cut(s) | 461, 785, 1624 |
| BstYI | RGATCY | 3 cut(s) | 461, 785, 1624 |
| Bsu15I | ATCGAT | 2 cut(s) | 87, 1669 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1025 |
| BsuRI | GGCC | 3 cut(s) | 521, 549, 651 |
| BsuTUI | ATCGAT | 2 cut(s) | 87, 1669 |
| BtgI | CCRYGG | 1 cut(s) | 1756 |
| BtsCI | GGATG | 5 cut(s) | 112, 187, 1042, 1172, 1749 |
| BtsIMutI | CAGTG | 6 cut(s) | 21, 79, 595, 884, 1122, 1295 |
| Cac8I | GCNNGC | 2 cut(s) | 151, 1765 |
| CciI | TCATGA | 1 cut(s) | 601 |
| CfoI | GCGC | 1 cut(s) | 1265 |
| Cfr13I | GGNCC | 2 cut(s) | 649, 1647 |
| ClaI | ATCGAT | 2 cut(s) | 87, 1669 |
| CseI | GACGC | 2 cut(s) | 463, 1665 |
| CsiI | ACCWGGT | 1 cut(s) | 792 |
| DdeI | CTNAG | 9 cut(s) | 221, 495, 619, 993, 1025, 1322, 1404, 1562, 1616 |
| DraI | TTTAAA | 1 cut(s) | 1662 |
| DraIII | CACNNNGTG | 1 cut(s) | 224 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 473 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1606 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 473 |
| Eam1104I | CTCTTC | 1 cut(s) | 422 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1606 |
| EarI | CTCTTC | 1 cut(s) | 422 |
| Eco130I | CCWWGG | 5 cut(s) | 66, 164, 1421, 1592, 1756 |
| Eco24I | GRGCYC | 1 cut(s) | 529 |
| Eco31I | GGTCTC | 2 cut(s) | 740, 1614 |
| Eco32I | GATATC | 1 cut(s) | 835 |
| Eco47I | GGWCC | 1 cut(s) | 1647 |
| Eco57I | CTGAAG | 2 cut(s) | 1422, 1442 |
| Eco81I | CCTNAGG | 1 cut(s) | 1025 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| EcoRII | CCWGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| EcoRV | GATATC | 1 cut(s) | 835 |
| EcoT14I | CCWWGG | 5 cut(s) | 66, 164, 1421, 1592, 1756 |
| EcoT38I | GRGCYC | 1 cut(s) | 529 |
| ErhI | CCWWGG | 5 cut(s) | 66, 164, 1421, 1592, 1756 |
| FaqI | GGGAC | 2 cut(s) | 374, 1633 |
| Fnu4HI | GCNGC | 6 cut(s) | 216, 904, 961, 1070, 1327, 1554 |
| FokI | GGATG | 5 cut(s) | 99, 194, 1049, 1159, 1736 |
| FriOI | GRGCYC | 1 cut(s) | 529 |
| Fsp4HI | GCNGC | 6 cut(s) | 216, 904, 961, 1070, 1327, 1554 |
| FspBI | CTAG | 7 cut(s) | 138, 150, 165, 780, 1583, 1593, 1725 |
| GlaI | GCGC | 1 cut(s) | 1264 |
| GluI | GCNGC | 6 cut(s) | 216, 904, 961, 1070, 1327, 1554 |
| GsuI | CTGGAG | 2 cut(s) | 50, 299 |
| HaeII | RGCGCY | 1 cut(s) | 1266 |
| HaeIII | GGCC | 3 cut(s) | 521, 549, 651 |
| HgaI | GACGC | 2 cut(s) | 463, 1665 |
| HhaI | GCGC | 1 cut(s) | 1265 |
| Hin1I | GRCGYC | 1 cut(s) | 474 |
| Hin6I | GCGC | 1 cut(s) | 1263 |
| HinP1I | GCGC | 1 cut(s) | 1263 |
| HincII | GTYRAC | 3 cut(s) | 412, 1477, 1579 |
| HindII | GTYRAC | 3 cut(s) | 412, 1477, 1579 |
| HinfI | GANTC | 6 cut(s) | 34, 581, 596, 983, 1157, 1331 |
| HpaI | GTTAAC | 1 cut(s) | 412 |
| HphI | GGTGA | 4 cut(s) | 605, 1166, 1319, 1550 |
| Hpy166II | GTNNAC | 6 cut(s) | 352, 412, 1295, 1477, 1547, 1579 |
| Hpy8I | GTNNAC | 6 cut(s) | 352, 412, 1295, 1477, 1547, 1579 |
| Hpy99I | CGWCG | 2 cut(s) | 816, 1681 |
| HpyAV | CCTTC | 5 cut(s) | 259, 456, 1233, 1443, 1466 |
| HpyCH4III | ACNGT | 9 cut(s) | 16, 74, 175, 280, 310, 590, 879, 925, 1292 |
| HpyCH4IV | ACGT | 1 cut(s) | 814 |
| HpyCH4V | TGCA | 7 cut(s) | 215, 238, 751, 827, 1069, 1352, 1763 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 159, 900, 957, 1773 |
| HpyF3I | CTNAG | 9 cut(s) | 221, 495, 619, 993, 1025, 1322, 1404, 1562, 1616 |
| HpySE526I | ACGT | 1 cut(s) | 814 |
| Hsp92I | GRCGYC | 1 cut(s) | 474 |
| HspAI | GCGC | 1 cut(s) | 1263 |
| KpnI | GGTACC | 1 cut(s) | 715 |
| KspAI | GTTAAC | 1 cut(s) | 412 |
| LmnI | GCTCC | 9 cut(s) | 30, 318, 448, 532, 664, 885, 1109, 1425, 1594 |
| Lsp1109I | GCAGC | 5 cut(s) | 227, 972, 1081, 1338, 1540 |
| LweI | GCATC | 5 cut(s) | 247, 547, 854, 1056, 1181 |
| MabI | ACCWGGT | 1 cut(s) | 792 |
| MaeI | CTAG | 7 cut(s) | 138, 150, 165, 780, 1583, 1593, 1725 |
| MaeII | ACGT | 1 cut(s) | 814 |
| MaeIII | GTNAC | 5 cut(s) | 142, 280, 873, 1307, 1492 |
| MboII | GAAGA | 5 cut(s) | 409, 795, 1263, 1428, 1529 |
| MflI | RGATCY | 3 cut(s) | 461, 785, 1624 |
| MhlI | GDGCHC | 3 cut(s) | 315, 529, 676 |
| MmeI | TCCRAC | 2 cut(s) | 684, 863 |
| MseI | TTAA | 3 cut(s) | 411, 1518, 1661 |
| MslI | CAYNNNNRTG | 4 cut(s) | 117, 912, 1300, 1758 |
| MspA1I | CMGCKG | 1 cut(s) | 963 |
| MspR9I | CCNGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| Mva1269I | GAATGC | 2 cut(s) | 205, 1735 |
| MvaI | CCWGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 159, 900, 957, 1773 |
| NcoI | CCATGG | 1 cut(s) | 1756 |
| NheI | GCTAGC | 1 cut(s) | 149 |
| NlaIV | GGNNCC | 4 cut(s) | 528, 713, 1626, 1649 |
| NmuCI | GTSAC | 2 cut(s) | 1307, 1492 |
| NspI | RCATGY | 2 cut(s) | 725, 1767 |
| OliI | CACNNNNGTG | 1 cut(s) | 1758 |
| PaeI | GCATGC | 1 cut(s) | 1767 |
| PagI | TCATGA | 1 cut(s) | 601 |
| PasI | CCCWGGG | 1 cut(s) | 430 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1207 |
| PctI | GAATGC | 2 cut(s) | 205, 1735 |
| PfeI | GAWTC | 6 cut(s) | 34, 581, 596, 983, 1157, 1331 |
| PflFI | GACNNNGTC | 1 cut(s) | 74 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 536 |
| PfoI | TCCNGGA | 2 cut(s) | 27, 177 |
| PkrI | GCNGC | 6 cut(s) | 217, 905, 962, 1071, 1328, 1555 |
| PsiI | TTATAA | 1 cut(s) | 104 |
| Psp6I | CCWGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| PspGI | CCWGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| PspN4I | GGNNCC | 4 cut(s) | 528, 713, 1626, 1649 |
| PspPI | GGNCC | 2 cut(s) | 649, 1647 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 127, 159 |
| PstI | CTGCAG | 2 cut(s) | 217, 753 |
| PsuI | RGATCY | 3 cut(s) | 461, 785, 1624 |
| PsyI | GACNNNGTC | 1 cut(s) | 74 |
| RseI | CAYNNNNRTG | 4 cut(s) | 117, 912, 1300, 1758 |
| SaqAI | TTAA | 3 cut(s) | 411, 1518, 1661 |
| SatI | GCNGC | 6 cut(s) | 216, 904, 961, 1070, 1327, 1554 |
| Sau96I | GGNCC | 2 cut(s) | 649, 1647 |
| ScaI | AGTACT | 1 cut(s) | 861 |
| ScrFI | CCNGG | 7 cut(s) | 29, 179, 431, 523, 794, 1622, 1735 |
| SduI | GDGCHC | 3 cut(s) | 315, 529, 676 |
| SexAI | ACCWGGT | 1 cut(s) | 792 |
| SfaNI | GCATC | 5 cut(s) | 247, 547, 854, 1056, 1181 |
| SfcI | CTRYAG | 3 cut(s) | 213, 276, 749 |
| SinI | GGWCC | 1 cut(s) | 1647 |
| SmiI | ATTTAAAT | 1 cut(s) | 1662 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 117, 912, 1300, 1758 |
| SmlI | CTYRAG | 3 cut(s) | 326, 839, 1689 |
| SmoI | CTYRAG | 3 cut(s) | 326, 839, 1689 |
| SphI | GCATGC | 1 cut(s) | 1767 |
| SsiI | CCGC | 4 cut(s) | 894, 904, 963, 1093 |
| SspI | AATATT | 2 cut(s) | 234, 399 |
| SspMI | CTAG | 7 cut(s) | 138, 150, 165, 780, 1583, 1593, 1725 |
| StyD4I | CCNGG | 7 cut(s) | 27, 177, 429, 521, 792, 1620, 1733 |
| StyI | CCWWGG | 5 cut(s) | 66, 164, 1421, 1592, 1756 |
| SwaI | ATTTAAAT | 1 cut(s) | 1662 |
| TaaI | ACNGT | 9 cut(s) | 16, 74, 175, 280, 310, 590, 879, 925, 1292 |
| TaiI | ACGT | 1 cut(s) | 817 |
| TaqI | TCGA | 6 cut(s) | 87, 241, 726, 1162, 1669, 1679 |
| TatI | WGTACW | 6 cut(s) | 11, 366, 859, 920, 1292, 1544 |
| TauI | GCSGC | 1 cut(s) | 906 |
| TfiI | GAWTC | 6 cut(s) | 34, 581, 596, 983, 1157, 1331 |
| Tru1I | TTAA | 3 cut(s) | 411, 1518, 1661 |
| Tru9I | TTAA | 3 cut(s) | 411, 1518, 1661 |
| TscAI | CASTG | 6 cut(s) | 21, 79, 595, 884, 1129, 1302 |
| TseFI | GTSAC | 2 cut(s) | 1307, 1492 |
| TseI | GCWGC | 5 cut(s) | 215, 960, 1069, 1326, 1553 |
| Tsp45I | GTSAC | 2 cut(s) | 1307, 1492 |
| TspDTI | ATGAA | 7 cut(s) | 101, 145, 198, 278, 618, 834, 1098 |
| TspGWI | ACGGA | 1 cut(s) | 1382 |
| TspRI | CASTG | 6 cut(s) | 21, 79, 595, 884, 1129, 1302 |
| Tth111I | GACNNNGTC | 1 cut(s) | 74 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 536 |
| VpaK11BI | GGWCC | 1 cut(s) | 1647 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1460 |
| XapI | RAATTY | 5 cut(s) | 55, 424, 1086, 1216, 1657 |
| XceI | RCATGY | 2 cut(s) | 725, 1767 |
| XmaJI | CCTAGG | 2 cut(s) | 164, 1592 |
| XspI | CTAG | 7 cut(s) | 138, 150, 165, 780, 1583, 1593, 1725 |
| ZrmI | AGTACT | 1 cut(s) | 861 |