Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002244

Physical Location & Seq

Genomic Coordinates Forward (+)

34597557 .. 34601668

Gene Structure 4112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGATGCCGAGCCGAATGTGGATGAGGAGGTCTCACCGGAGAGTCAAGACGATGGAGGTGATGAGGTGACATGGAGGACGTCTCCGACTTCTGCTGTTGAAGCTGGAAAGGTTGAGAAATCCCTGTCGTTGGTGTCCCTGAATAGGGTTGGCGTGAAAAGGGTTAAACCAGATCAGGATGTAGAACAAAATGGAAATGTGGTCGATAGGACTATTTCTGAAATAGCTGGTAGTCAGAGTCCATTCCGGACTCCACCTTCTTTATCATACTGTCATGATAAGGCATTGCTTGAACTCTTAGATCAAGTAGAAGATGTTATGTTTGTTGAAGATTCAGTACCTGATGATGTGGAGGCATCTCAATTACAAGTTAAAGATAAATCAGAGCATGTTGTAAAAAGAGTGGTGACAGCTCCAACAGAACAGGTCACTCGGGCATCTTCCAATTACAATTTCCTTGTATTGGAGGTATCTGAGAATTGTAGACCTGATGATTCCTCTGGTGCTCAGTGCATGTATAAGGTTCTTCGCTTATTGAATGAGCAAAGTGGAGAAGAGTGTGCTGTGTATTTATGGGTAGAGTGGTTTTACAGTGTCATTGCACCTGGAGATACTGTCAATGCTATTGGTGAATTTGACGACCACGGACAGTGTCATGTGGATAATCACCATAACTTTTTAATTGTTCACCCTGATGTCTTAGTGTCTGGAACTCGGGTTGCAGCTCATTTCATTTGTCATAGGCGAACTGTGCTGGATGAAAGGCTAAAAGGCAATGAGTATTCAACTCCAGCACTAATTGGCACAATATTGCATCAAGTTTTTGAGGATTCTGAAGCTTCATCTGTTGATTTTGGATCTGAGAATGGGGTGAAAAAAGTCGCAATATCTGAGGTAATTGATATTGAGGAGATGGCATGGGCTCCAAAATATGGTCTAAAAGGTATGATTGATGCTTCTGTCAGGGTGAAAGTCGAAGCTAACAAAAATGCACCTGACGTGAAGGTTATGCCTTCGGAGTTTAAAACCGGGAAAGTGCCAAAGGACCAGGCAAGACTCTTCTCTGTACCAAAATCTCTTAGGGGATTATTATACTCGACTGATGAGCATAGTGCCCAAGTAATCTTATACACTCTTCTTATGTCGGAGAGGTACCAAAAGCATGTTGATACTGGTCTTCTATGTTACCTCCAGTCTGATCAGACACAGGGAATTGCGGTTAGAAGATCTGACATTGTTGGGCTAATCATGCAACGTAATCAACTTGCAAATGATATTGTCAAGGCCTCAAGACTGCAAGCCCTTCCCCCAATGTTACGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 map03030

Pfam Domains

Protein Families

AAA_11 AAA_12 Cas_Cas4 Dna2

Protein Analysis

442

Amino Acids

49.02

Weight (kDa)

4.99

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dna2	PF08696	181 - 277	4.9e-30	DNA replication factor Dna2
Dna2	PF08696	287 - 323	1.4e-10	DNA replication factor Dna2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08840 AT1G08840 AT1G08840 AT1G08840 AT1G08840
fragaria_vesca	FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480 FvH4_7g08480
malus_domestica	MD02G1227500.v1.1 MD07G1085900.v1.1
prunus_persica	Prupe.2G112200_v2.0.a1
pyrus_communis	pycom02g19640 pycom07g06880
rosa_chinensis	RchiOBHm_Chr1g0343241 RchiOBHm_Chr2g0122951 RchiOBHm_Chr2g0122961 RchiOBHm_Chr2g0122971
rosa_laevigata	RLG00000001782 RLG00000001791 RLG00000018727 RLG00000028987
rosa_multiflora	Rmu_sc0004431.1_g000010 Rmu_sc0006993.1_g000005
rosa_roxburghii	Rroxscaffold_4G00310940
rosa_rugosa	Rorug01G0165900 Rorug01G0165900
rosa_samantha	Rh1AG181600 Rh1BG149800 Rh1CG168400 Rh1DG181700 Rh2AG302300 Rh2BG309700 Rh2BG309800 Rh2DG326400 Rh6BG105000 Rh7BG295700
rosa_wichuraiana	Rw1G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	83
Acc65I	GGTACC	1 cut(s)	1152
AccB1I	GGYRCC	1 cut(s)	1152
AccB7I	CCANNNNNTGG	1 cut(s)	932
AccI	GTMKAC	1 cut(s)	484
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	1 cut(s)	1217
AclWI	GGATC	1 cut(s)	865
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	855
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	3 cut(s)	339, 1068, 1154
AfiI	CCNNNNNNNGG	5 cut(s)	130, 144, 145, 463, 932
AgsI	TTSAA	5 cut(s)	101, 293, 329, 538, 786
AjiI	CACGTC	1 cut(s)	1000
AjnI	CCWGG	2 cut(s)	604, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AluBI	AGCT	6 cut(s)	104, 227, 413, 725, 839, 980
AluI	AGCT	6 cut(s)	104, 227, 413, 725, 839, 980
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	37, 87
AlwI	GGATC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	341
Ama87I	CYCGRG	2 cut(s)	432, 714
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	1 cut(s)	1284
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	1 cut(s)	632
Asp718I	GGTACC	1 cut(s)	1152
AspS9I	GGNCC	1 cut(s)	1045
AsuC2I	CCSGG	1 cut(s)	1030
AsuHPI	GGTGA	9 cut(s)	27, 71, 79, 418, 641, 659, 680, 883, 979
AvaI	CYCGRG	2 cut(s)	432, 714
AvaII	GGWCC	1 cut(s)	1045
BaeGI	GKGCMC	1 cut(s)	1117
BanI	GGYRCC	1 cut(s)	1152
BanII	GRGCYC	1 cut(s)	925
BarI	GAAGNNNNNNTAC	2 cut(s)	321, 353
BbsI	GAAGAC	1 cut(s)	1169
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	2 cut(s)	47, 907
BciT130I	CCWGG	2 cut(s)	606, 1049
BclI	TGATCA	1 cut(s)	1198
BcnI	CCSGG	1 cut(s)	1030
BcoDI	GTCTC	2 cut(s)	37, 87
BglII	AGATCT	1 cut(s)	1226
BisI	GCNGC	1 cut(s)	723
BlsI	GCNGC	1 cut(s)	724
Bme1390I	CCNGG	3 cut(s)	606, 1030, 1049
Bme18I	GGWCC	1 cut(s)	1045
BmeT110I	CYCGRG	2 cut(s)	432, 714
BmgBI	CACGTC	1 cut(s)	1000
BmgT120I	GGNCC	1 cut(s)	1045
BmiI	GGNNCC	2 cut(s)	924, 1154
BmrFI	CCNGG	3 cut(s)	606, 1030, 1049
BmsI	GCATC	4 cut(s)	365, 446, 823, 943
BpiI	GAAGAC	1 cut(s)	1169
BplI	GAGNNNNNCTC	4 cut(s)	17, 49, 67, 99
BpmI	CTGGAG	3 cut(s)	627, 774, 1175
BpuEI	CTTGAG	1 cut(s)	1273
BpuMI	CCSGG	1 cut(s)	1030
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	2 cut(s)	37, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 144, 145, 463, 932
Bse1I	ACTGG	2 cut(s)	1177, 1192
Bse3DI	GCAATG	3 cut(s)	284, 597, 781
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	606, 1049
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	4 cut(s)	10, 28, 184, 763
BseLI	CCNNNNNNNGG	5 cut(s)	130, 144, 145, 463, 932
BseMI	GCAATG	3 cut(s)	284, 597, 781
BseMII	CTCAG	4 cut(s)	465, 521, 852, 882
BseNI	ACTGG	2 cut(s)	1177, 1192
BseRI	GAGGAG	2 cut(s)	41, 923
BseSI	GKGCMC	1 cut(s)	1117
BseXI	GCAGC	1 cut(s)	734
BshFI	GGCC	1 cut(s)	1286
BshNI	GGYRCC	1 cut(s)	1152
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	2 cut(s)	432, 714
BsiSI	CCGG	3 cut(s)	38, 247, 1029
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	5 cut(s)	130, 144, 145, 463, 932
BsmAI	GTCTC	2 cut(s)	37, 87
BsmBI	CGTCTC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	1286
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	2 cut(s)	432, 714
Bsp1286I	GDGCHC	3 cut(s)	508, 925, 1117
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	172, 301, 857, 1198, 1226
BspACI	CCGC	1 cut(s)	1217
BspANI	GGCC	1 cut(s)	1286
BspCNI	CTCAG	4 cut(s)	466, 520, 853, 883
BspEI	TCCGGA	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	924, 1154
BspPI	GGATC	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	1152
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	3 cut(s)	284, 597, 781
BsrI	ACTGG	2 cut(s)	1177, 1192
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	5 cut(s)	172, 301, 857, 1198, 1226
BssNI	GRCGYC	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	606, 1049
Bst4CI	ACNGT	5 cut(s)	272, 593, 616, 651, 751
Bst6I	CTCTTC	3 cut(s)	549, 1064, 1140
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	1299
BstDEI	CTNAG	7 cut(s)	298, 474, 507, 700, 861, 891, 1079
BstDSI	CCRYGG	1 cut(s)	643
BstF5I	GGATG	4 cut(s)	10, 28, 184, 763
BstKTI	GATC	5 cut(s)	175, 304, 860, 1201, 1229
BstMAI	GTCTC	2 cut(s)	37, 87
BstMBI	GATC	5 cut(s)	172, 301, 857, 1198, 1226
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 751, 1249
BstNI	CCWGG	2 cut(s)	606, 1049
BstNSI	RCATGY	3 cut(s)	392, 517, 1166
BstSCI	CCNGG	3 cut(s)	604, 1028, 1047
BstSLI	GKGCMC	1 cut(s)	1117
BstV1I	GCAGC	1 cut(s)	734
BstV2I	GAAGAC	1 cut(s)	1169
BstX2I	RGATCY	2 cut(s)	857, 1226
BstYI	RGATCY	2 cut(s)	857, 1226
BsuRI	GGCC	1 cut(s)	1286
BtgI	CCRYGG	1 cut(s)	643
BtrI	CACGTC	1 cut(s)	1000
BtsCI	GGATG	4 cut(s)	10, 28, 184, 763
BtsIMutI	CAGTG	3 cut(s)	515, 598, 656
Cac8I	GCNNGC	1 cut(s)	1299
CaiI	CAGNNNCTG	1 cut(s)	341
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	1045
Csp6I	GTAC	3 cut(s)	338, 1067, 1153
CviAII	CATG	8 cut(s)	72, 275, 389, 514, 656, 918, 1163, 1249
CviQI	GTAC	3 cut(s)	338, 1067, 1153
DdeI	CTNAG	7 cut(s)	298, 474, 507, 700, 861, 891, 1079
DpnI	GATC	5 cut(s)	174, 303, 859, 1200, 1228
DpnII	GATC	5 cut(s)	172, 301, 857, 1198, 1226
DraI	TTTAAA	1 cut(s)	1024
Eam1104I	CTCTTC	3 cut(s)	549, 1064, 1140
EarI	CTCTTC	3 cut(s)	549, 1064, 1140
Eco147I	AGGCCT	1 cut(s)	1286
Eco24I	GRGCYC	1 cut(s)	925
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	1045
Eco57I	CTGAAG	1 cut(s)	855
Eco88I	CYCGRG	2 cut(s)	432, 714
EcoRII	CCWGG	2 cut(s)	604, 1047
EcoT38I	GRGCYC	1 cut(s)	925
Esp3I	CGTCTC	1 cut(s)	87
FaeI	CATG	8 cut(s)	75, 278, 392, 517, 659, 921, 1166, 1252
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	8 cut(s)	71, 274, 388, 513, 655, 917, 1162, 1248
FbaI	TGATCA	1 cut(s)	1198
FblI	GTMKAC	1 cut(s)	484
Fnu4HI	GCNGC	1 cut(s)	723
FokI	GGATG	4 cut(s)	17, 35, 191, 770
FriOI	GRGCYC	1 cut(s)	925
Fsp4HI	GCNGC	1 cut(s)	723
GluI	GCNGC	1 cut(s)	723
GsuI	CTGGAG	3 cut(s)	627, 774, 1175
HaeIII	GGCC	1 cut(s)	1286
HapII	CCGG	3 cut(s)	38, 247, 1029
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	8 cut(s)	75, 278, 392, 517, 659, 921, 1166, 1252
HindIII	AAGCTT	1 cut(s)	837
HinfI	GANTC	7 cut(s)	43, 238, 250, 332, 494, 830, 1056
HpaII	CCGG	3 cut(s)	38, 247, 1029
HphI	GGTGA	9 cut(s)	27, 71, 79, 418, 641, 659, 680, 883, 979
Hpy166II	GTNNAC	2 cut(s)	485, 688
Hpy188III	TCNNGA	6 cut(s)	47, 176, 247, 275, 708, 1290
Hpy8I	GTNNAC	2 cut(s)	485, 688
HpyAV	CCTTC	4 cut(s)	267, 997, 1023, 1313
HpyCH4III	ACNGT	5 cut(s)	272, 593, 616, 651, 751
HpyCH4IV	ACGT	3 cut(s)	80, 999, 1255
HpyCH4V	TGCA	8 cut(s)	513, 602, 722, 814, 992, 1252, 1268, 1297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 751, 1249
HpyF3I	CTNAG	7 cut(s)	298, 474, 507, 700, 861, 891, 1079
HpySE526I	ACGT	3 cut(s)	80, 999, 1255
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	8 cut(s)	75, 278, 392, 517, 659, 921, 1166, 1252
Kpn2I	TCCGGA	1 cut(s)	246
KpnI	GGTACC	1 cut(s)	1156
Ksp22I	TGATCA	1 cut(s)	1198
Kzo9I	GATC	5 cut(s)	172, 301, 857, 1198, 1226
LmnI	GCTCC	2 cut(s)	418, 928
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	4 cut(s)	365, 446, 823, 943
MaeII	ACGT	3 cut(s)	80, 999, 1255
MaeIII	GTNAC	5 cut(s)	67, 406, 427, 1184, 1314
MalI	GATC	5 cut(s)	174, 303, 859, 1200, 1228
MboI	GATC	5 cut(s)	172, 301, 857, 1198, 1226
MboII	GAAGA	9 cut(s)	323, 341, 432, 518, 566, 1051, 1127, 1169, 1236
MflI	RGATCY	2 cut(s)	857, 1226
MhlI	GDGCHC	3 cut(s)	508, 925, 1117
MluCI	AATT	9 cut(s)	362, 445, 451, 478, 632, 681, 798, 897, 1212
MlyI	GAGTC	4 cut(s)	52, 244, 247, 1050
MmeI	TCCRAC	3 cut(s)	110, 440, 1125
MroI	TCCGGA	1 cut(s)	246
MseI	TTAA	4 cut(s)	165, 372, 680, 1023
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	3 cut(s)	38, 247, 1029
MspR9I	CCNGG	3 cut(s)	606, 1030, 1049
MvaI	CCWGG	2 cut(s)	606, 1049
MwoI	GCNNNNNNNGC	3 cut(s)	101, 751, 1249
NciI	CCSGG	1 cut(s)	1030
NdeII	GATC	5 cut(s)	172, 301, 857, 1198, 1226
NlaIII	CATG	8 cut(s)	75, 278, 392, 517, 659, 921, 1166, 1252
NlaIV	GGNNCC	2 cut(s)	924, 1154
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	67, 406, 427
NspI	RCATGY	3 cut(s)	392, 517, 1166
PagI	TCATGA	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	1286
PfeI	GAWTC	3 cut(s)	332, 494, 830
PflFI	GACNNNGTC	1 cut(s)	651
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	1 cut(s)	724
PleI	GAGTC	4 cut(s)	51, 244, 246, 1050
PpsI	GAGTC	4 cut(s)	51, 244, 246, 1050
Psp6I	CCWGG	2 cut(s)	604, 1047
PspGI	CCWGG	2 cut(s)	604, 1047
PspN4I	GGNNCC	2 cut(s)	924, 1154
PspPI	GGNCC	1 cut(s)	1045
PstNI	CAGNNNCTG	1 cut(s)	341
PsuI	RGATCY	2 cut(s)	857, 1226
PsyI	GACNNNGTC	1 cut(s)	651
RsaI	GTAC	3 cut(s)	339, 1068, 1154
RsaNI	GTAC	3 cut(s)	338, 1067, 1153
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	4 cut(s)	165, 372, 680, 1023
SatI	GCNGC	1 cut(s)	723
Sau3AI	GATC	5 cut(s)	172, 301, 857, 1198, 1226
Sau96I	GGNCC	1 cut(s)	1045
SchI	GAGTC	4 cut(s)	52, 244, 247, 1050
ScrFI	CCNGG	3 cut(s)	606, 1030, 1049
SduI	GDGCHC	3 cut(s)	508, 925, 1117
SfaNI	GCATC	4 cut(s)	365, 446, 823, 943
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	1288
SmoI	CTYRAG	1 cut(s)	1288
Sse9I	AATT	9 cut(s)	362, 445, 451, 478, 632, 681, 798, 897, 1212
SseBI	AGGCCT	1 cut(s)	1286
SsiI	CCGC	1 cut(s)	1217
SspI	AATATT	1 cut(s)	810
StuI	AGGCCT	1 cut(s)	1286
StyD4I	CCNGG	3 cut(s)	604, 1028, 1047
TaaI	ACNGT	5 cut(s)	272, 593, 616, 651, 751
TaiI	ACGT	3 cut(s)	83, 1002, 1258
TaqI	TCGA	3 cut(s)	204, 975, 1097
TasI	AATT	9 cut(s)	362, 445, 451, 478, 632, 681, 798, 897, 1212
TfiI	GAWTC	3 cut(s)	332, 494, 830
Tru1I	TTAA	4 cut(s)	165, 372, 680, 1023
Tru9I	TTAA	4 cut(s)	165, 372, 680, 1023
TscAI	CASTG	3 cut(s)	515, 598, 656
TseFI	GTSAC	3 cut(s)	67, 406, 427
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	3 cut(s)	67, 406, 427
TspDTI	ATGAA	3 cut(s)	721, 774, 831
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	3 cut(s)	515, 598, 656
Tth111I	GACNNNGTC	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	932
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	3 cut(s)	392, 517, 1166
XmiI	GTMKAC	1 cut(s)	484
ZraI	GACGTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.