FvH4_7g10080

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004245
Physical Location & Seq
Forward (+)
9516475 .. 9517348
874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10080.t1

Sequence Viewer

Length: 714 bp
ATGTCCACAGAAACAGAAAGCTTCTCAAACTCGAACTGGGCTATGTTGGAATCAATCCGCCAACATCTTCTAGCCGACGATTTTGAATTTGATATCCCGTCTCCATTTTTCGCAGACTCTCCTGCTCAAAGTACTTCAAGCTCTAGCAGCGTTGAAGTATCGAGCAACGACTCGGAGATCATGGAGGAGCCGAACCAAATGTTCACGAGTAAACTCGAGGTGGAGGTGGTGGAGAGTGAACACAACGCGCCGACGTCGGGGCAGAGGAATTTTAGGGGAGTGAGGAGGCGGCCGTGGGGAAAGTACTCGGCGGAGATAAGAGACCCGAAAAAGAAGGGGATGAGAGTGTGGCTGGGAACCTACGAGAGGGCGGAGGACGCAGGCTTGGCATACGACCGAGCAGCTTTCAAAATGCGTGGCTCCAAAGCGAAGCTTAACTTTCCTCACTTGATCGGCACGCATGATATGGAGGTGGGTCGTGTCCTTCCAAAGCGTGCTTCGCCGGAGCCGTCGTCTCCGTCGTCTGAAGATGGCTCGCCGAAGCCTAAGAGGAGGAGGAGGAGTGGAGTGGACTCGGCAGCAACGAAAGACAAGTTGGATGAAGCTGCTAAAGAGTTTCATCATGTGTTCCAAGTGGACTCGATCACATTTGGCGACGAAGACATGGTGCTCTTGTCGCCGTCTGAATGCTCAGACATTCTTTCCTTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

238

Amino Acids

26.53

Weight (kDa)

5.36

Isoelectric Point (pI)

70.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 90 - 141 1.2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 257
AccII CGCG 1 cut(s) 248
AciI CCGC 4 cut(s) 58, 289, 311, 371
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 2 cut(s) 86, 268
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 2 cut(s) 133, 305
AfiI CCNNNNNNNGG 2 cut(s) 257, 366
AgsI TTSAA 4 cut(s) 86, 138, 155, 409
AjuI GAANNNNNNNTTGG 4 cut(s) 481, 513, 578, 610
AluBI AGCT 5 cut(s) 21, 141, 404, 433, 605
AluI AGCT 5 cut(s) 21, 141, 404, 433, 605
Alw21I GWGCWC 1 cut(s) 672
Alw26I GTCTC 3 cut(s) 105, 315, 519
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 1 cut(s) 290
ApeKI GCWGC 4 cut(s) 147, 401, 578, 605
ApoI RAATTY 2 cut(s) 86, 268
AspLEI GCGC 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 215
BauI CACGAG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 666
Bbv12I GWGCWC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 159, 413, 590, 592
BccI CCATC 1 cut(s) 524
BceAI ACGGC 3 cut(s) 277, 493, 664
BcoDI GTCTC 3 cut(s) 105, 315, 519
BfaI CTAG 2 cut(s) 71, 144
BisI GCNGC 5 cut(s) 148, 290, 402, 579, 606
BlsI GCNGC 5 cut(s) 149, 291, 403, 580, 607
BmcAI AGTACT 2 cut(s) 133, 305
BmeT110I CYCGRG 1 cut(s) 215
BmiI GGNNCC 4 cut(s) 189, 358, 421, 507
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 547, 577
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 366
Bse1I ACTGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 2 cut(s) 345, 604
BseLI CCNNNNNNNGG 2 cut(s) 257, 366
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 1 cut(s) 41
BseRI GAGGAG 6 cut(s) 200, 298, 565, 568, 571, 574
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 4 cut(s) 159, 413, 590, 592
BseYI CCCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 2 cut(s) 293, 397
BshFI GGCC 1 cut(s) 292
BsiEI CGRYCG 2 cut(s) 293, 397
BsiHKAI GWGCWC 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 257, 366
BsmAI GTCTC 3 cut(s) 105, 315, 519
BsmBI CGTCTC 2 cut(s) 105, 519
BsmI GAATGC 1 cut(s) 692
BsnI GGCC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 315
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 3 cut(s) 177, 450, 642
BspACI CCGC 4 cut(s) 58, 289, 311, 371
BspANI GGCC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 704
BspFNI CGCG 1 cut(s) 248
BspLI GGNNCC 4 cut(s) 189, 358, 421, 507
BspTNI GGTCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 3 cut(s) 177, 450, 642
BssNI GRCGYC 1 cut(s) 254
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
BstACI GRCGYC 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 382, 458, 495, 536
BstDEI CTNAG 2 cut(s) 546, 691
BstDSI CCRYGG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 2 cut(s) 345, 604
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 180, 453, 645
BstMAI GTCTC 3 cut(s) 105, 315, 519
BstMBI GATC 3 cut(s) 177, 450, 642
BstMCI CGRYCG 2 cut(s) 293, 397
BstMWI GCNNNNNNNGC 5 cut(s) 147, 377, 386, 499, 676
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 4 cut(s) 159, 413, 590, 592
BstV2I GAAGAC 1 cut(s) 666
BstZI CGGCCG 1 cut(s) 290
BsuRI GGCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 2 cut(s) 345, 604
Cac8I GCNNGC 4 cut(s) 382, 458, 495, 536
CfoI GCGC 1 cut(s) 250
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 132, 304
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 4 cut(s) 181, 461, 623, 664
CviQI GTAC 2 cut(s) 132, 304
DdeI CTNAG 2 cut(s) 546, 691
DpnI GATC 3 cut(s) 179, 452, 644
DpnII GATC 3 cut(s) 177, 450, 642
EaeI YGGCCR 1 cut(s) 290
EagI CGGCCG 1 cut(s) 290
EciI GGCGGA 3 cut(s) 47, 326, 386
EclXI CGGCCG 1 cut(s) 290
Eco31I GGTCTC 1 cut(s) 315
Eco32I GATATC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 94
Esp3I CGTCTC 2 cut(s) 105, 519
FaeI CATG 4 cut(s) 184, 464, 626, 667
FaiI YATR 8 cut(s) 44, 182, 391, 462, 467, 624, 665, 712
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 422, 454
FatI CATG 4 cut(s) 180, 460, 622, 663
Fnu4HI GCNGC 5 cut(s) 148, 290, 402, 579, 606
FokI GGATG 2 cut(s) 352, 611
Fsp4HI GCNGC 5 cut(s) 148, 290, 402, 579, 606
FspBI CTAG 2 cut(s) 71, 144
GlaI GCGC 1 cut(s) 249
GluI GCNGC 5 cut(s) 148, 290, 402, 579, 606
GsaI CCCAGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 292
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 4 cut(s) 184, 464, 626, 667
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 2 cut(s) 19, 431
HinfI GANTC 5 cut(s) 50, 116, 170, 572, 638
HpaII CCGG 1 cut(s) 503
Hpy166II GTNNAC 6 cut(s) 6, 204, 212, 239, 571, 637
Hpy188I TCNGA 4 cut(s) 175, 526, 685, 694
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 6 cut(s) 6, 204, 212, 239, 571, 637
Hpy99I CGWCG 6 cut(s) 80, 256, 259, 514, 523, 659
HpyAV CCTTC 2 cut(s) 328, 494
HpyCH4IV ACGT 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 377, 386, 499, 676
HpyF3I CTNAG 2 cut(s) 546, 691
HpySE526I ACGT 1 cut(s) 254
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 4 cut(s) 184, 464, 626, 667
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 177, 450, 642
LmnI GCTCC 3 cut(s) 187, 425, 505
LpnPI CCDG 5 cut(s) 22, 135, 338, 366, 516
Lsp1109I GCAGC 4 cut(s) 159, 413, 590, 592
MaeI CTAG 2 cut(s) 71, 144
MaeII ACGT 1 cut(s) 254
MalI GATC 3 cut(s) 179, 452, 644
MboI GATC 3 cut(s) 177, 450, 642
MboII GAAGA 3 cut(s) 59, 539, 671
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 2 cut(s) 86, 268
MlyI GAGTC 4 cut(s) 110, 164, 566, 632
MmeI TCCRAC 2 cut(s) 27, 576
MseI TTAA 1 cut(s) 435
MspI CCGG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 692
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 5 cut(s) 147, 377, 386, 499, 676
NdeII GATC 3 cut(s) 177, 450, 642
NlaIII CATG 4 cut(s) 184, 464, 626, 667
NlaIV GGNNCC 4 cut(s) 189, 358, 421, 507
NmeAIII GCCGAG 2 cut(s) 287, 554
PaeR7I CTCGAG 1 cut(s) 215
PcsI WCGNNNNNNNCGW 3 cut(s) 506, 518, 581
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 5 cut(s) 149, 291, 403, 580, 607
PleI GAGTC 4 cut(s) 110, 164, 566, 632
PpsI GAGTC 4 cut(s) 110, 164, 566, 632
PspFI CCCAGC 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 189, 358, 421, 507
PspXI VCTCGAGB 1 cut(s) 215
RsaI GTAC 2 cut(s) 133, 305
RsaNI GTAC 2 cut(s) 132, 304
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 5 cut(s) 148, 290, 402, 579, 606
Sau3AI GATC 3 cut(s) 177, 450, 642
ScaI AGTACT 2 cut(s) 133, 305
SchI GAGTC 4 cut(s) 110, 164, 566, 632
SduI GDGCHC 1 cut(s) 672
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 86, 268
SsiI CCGC 4 cut(s) 58, 289, 311, 371
SspMI CTAG 2 cut(s) 71, 144
TaiI ACGT 1 cut(s) 257
TaqI TCGA 4 cut(s) 32, 161, 216, 641
TaqII GACCGA 1 cut(s) 411
TasI AATT 2 cut(s) 86, 268
TatI WGTACW 2 cut(s) 131, 303
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseI GCWGC 4 cut(s) 147, 401, 578, 605
TspDTI ATGAA 2 cut(s) 608, 615
TspGWI ACGGA 1 cut(s) 507
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 2 cut(s) 86, 268
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 2 cut(s) 71, 144
ZraI GACGTC 1 cut(s) 255
ZrmI AGTACT 2 cut(s) 133, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.