Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487513.1

Orthogroup ID

OG0004245

Physical Location & Seq

Genomic Coordinates Reverse (-)

1424 .. 2125

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgtccatagaaacccaaagcttctcgaactcagactggcgggctctcttggagtcgatccgtcagcatcttcttgacgacgatttcgatacccagttgggttttttcgcagattctcctgctcaacgtacttccagctctaacagcactgagatatcgaacagtgatgcggagatagtggggcggaaccaagcattcactagtgaatttgaggaggaggtggcggagcgtaaacaccacgcgccatcggctccgaggcattttaggggagtgaggaggcggccgtggggaaagtacgcggccgagataagggacccgaagaagaacgggatgagagtgtggctcggaacctacgagacggcggaggatgccggattggcttacgaccgagccgctttcaaaatgcgtggctccaaagctaagcttaactttcctcacttgattggcacgcatgatatggaggtgggccgtgtgtttcccaagcgtgcctcgccggagccggcatctccgtcctccacaacgtcgtctgaagatggctcgccgaagccaaagaggaggaggggtggagtggactcggatgaagctgctcaagagtttcatctgttccaagtggactcattcacatttggcaacgaattattggttgaggatatggtgctcttatcaccatctgaatgctcagacattctttcttttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

233

Amino Acids

26.1

Weight (kDa)

5.43

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10070 FvH4_7g10080
malus_domestica	MD07G1106200.v1.1 MD07G1106300.v1.1
prunus_persica	Prupe.2G129600_v2.0.a1
pyrus_communis	pycom07g09090
rosa_chinensis	RchiOBHm_Chr1g0347641 RchiOBHm_Chr1g0347661 RchiOBHm_Chr1g0347671
rosa_laevigata	RLG00000028721 RLG00000028722 RLG00000028724
rosa_multiflora	Rmu_co8415911.1_g000001 Rmu_co8487513.1_g000001 Rmu_sc0025693.1_g000001 Rmu_sc0025693.1_g000002 Rmu_sc0025693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307530 Rroxscaffold_4G00307540
rosa_rugosa	Rorug01G0188400 Rorug01G0188600
rosa_samantha	Rh1AG206200 Rh1AG206300 Rh1AG206400 Rh1BG171500 Rh1BG171700 Rh1BG171800 Rh1DG201500 Rh1DG201600 Rh1DG201700
rosa_wichuraiana	Rw1G017250 Rw1G017260 Rw1G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	242, 299
AciI	CCGC	8 cut(s)	40, 170, 184, 224, 280, 299, 362, 393
AclWI	GGATC	1 cut(s)	52
AcoI	YGGCCR	2 cut(s)	281, 300
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	130, 296
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	400
AhlI	ACTAGT	1 cut(s)	200
AluBI	AGCT	5 cut(s)	21, 138, 419, 424, 584
AluI	AGCT	5 cut(s)	21, 138, 419, 424, 584
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	3 cut(s)	281, 300, 466
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	313, 466
AsuHPI	GGTGA	1 cut(s)	657
AvaII	GGWCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	3 cut(s)	253, 527, 676
BceAI	ACGGC	3 cut(s)	268, 375, 453
BcoDI	GTCTC	1 cut(s)	350
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	281, 300, 393, 585
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	4 cut(s)	282, 301, 394, 586
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	2 cut(s)	313, 466
BmiI	GGNNCC	7 cut(s)	188, 252, 314, 315, 349, 412, 498
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	4 cut(s)	76, 157, 358, 512
BmuI	ACTGGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	254, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	2 cut(s)	41, 94
BseDI	CCNNGG	2 cut(s)	254, 284
BseGI	GGATG	3 cut(s)	336, 373, 583
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	45, 141, 693
BseNI	ACTGG	2 cut(s)	41, 94
BseRI	GAGGAG	5 cut(s)	227, 230, 289, 568, 571
BseX3I	CGGCCG	2 cut(s)	281, 300
BseXI	GCAGC	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	242, 299
Bsh1285I	CGRYCG	3 cut(s)	284, 303, 388
BshFI	GGCC	3 cut(s)	283, 302, 468
BsiEI	CGRYCG	3 cut(s)	284, 303, 388
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	3 cut(s)	372, 494, 500
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	350
BsmBI	CGTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	2 cut(s)	194, 680
BsnI	GGCC	3 cut(s)	283, 302, 468
Bsp1286I	GDGCHC	2 cut(s)	46, 660
Bsp143I	GATC	1 cut(s)	57
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	8 cut(s)	40, 170, 184, 224, 280, 299, 362, 393
BspANI	GGCC	3 cut(s)	283, 302, 468
BspCNI	CTCAG	3 cut(s)	44, 142, 692
BspFNI	CGCG	2 cut(s)	242, 299
BspLI	GGNNCC	7 cut(s)	188, 252, 314, 315, 349, 412, 498
BspPI	GGATC	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	41, 94
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	254, 284
BssMI	GATC	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	164
BstC8I	GCNNGC	5 cut(s)	42, 449, 486, 501, 539
BstDEI	CTNAG	4 cut(s)	31, 150, 420, 679
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	336, 373, 583
BstFNI	CGCG	2 cut(s)	242, 299
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	57
BstMCI	CGRYCG	3 cut(s)	284, 303, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	144, 248, 368, 377, 490
BstUI	CGCG	2 cut(s)	242, 299
BstV1I	GCAGC	1 cut(s)	571
BstZI	CGGCCG	2 cut(s)	281, 300
BsuRI	GGCC	3 cut(s)	283, 302, 468
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	3 cut(s)	336, 373, 583
BtsIMutI	CAGTG	2 cut(s)	147, 169
Cac8I	GCNNGC	5 cut(s)	42, 449, 486, 501, 539
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	313, 466
Csp6I	GTAC	2 cut(s)	129, 295
CspCI	CAANNNNNGTGG	2 cut(s)	388, 423
CviAII	CATG	1 cut(s)	452
CviQI	GTAC	2 cut(s)	129, 295
DdeI	CTNAG	4 cut(s)	31, 150, 420, 679
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	281, 300
EagI	CGGCCG	2 cut(s)	281, 300
EciI	GGCGGA	3 cut(s)	199, 239, 377
EclXI	CGGCCG	2 cut(s)	281, 300
Eco24I	GRGCYC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	313
Eco52I	CGGCCG	2 cut(s)	281, 300
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	46
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	1 cut(s)	455
FaiI	YATR	4 cut(s)	8, 453, 458, 653
FalI	AAGNNNNNCTT	4 cut(s)	408, 440, 413, 445
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	281, 300, 393, 585
FokI	GGATG	3 cut(s)	343, 380, 590
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	281, 300, 393, 585
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	4 cut(s)	281, 300, 393, 585
HaeIII	GGCC	3 cut(s)	283, 302, 468
HapII	CCGG	3 cut(s)	372, 494, 500
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	2 cut(s)	19, 422
HinfI	GANTC	4 cut(s)	53, 113, 572, 614
HpaII	CCGG	3 cut(s)	372, 494, 500
HphI	GGTGA	1 cut(s)	657
Hpy166II	GTNNAC	3 cut(s)	233, 571, 613
Hpy188I	TCNGA	7 cut(s)	34, 255, 347, 529, 577, 673, 682
Hpy188III	TCNNGA	3 cut(s)	25, 74, 590
Hpy8I	GTNNAC	3 cut(s)	233, 571, 613
Hpy99I	CGWCG	2 cut(s)	83, 526
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	2 cut(s)	127, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	144, 248, 368, 377, 490
HpyF3I	CTNAG	4 cut(s)	31, 150, 420, 679
HpySE526I	ACGT	2 cut(s)	127, 521
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	1 cut(s)	242
KflI	GGGWCCC	1 cut(s)	313
KroI	GCCGGC	1 cut(s)	499
KroNI	GCCGGC	1 cut(s)	501
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	4 cut(s)	226, 256, 416, 496
LpnPI	CCDG	7 cut(s)	22, 107, 132, 148, 385, 507, 513
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	4 cut(s)	76, 157, 358, 512
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	2 cut(s)	127, 521
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	4 cut(s)	62, 331, 334, 542
MhlI	GDGCHC	2 cut(s)	46, 660
MluCI	AATT	2 cut(s)	206, 635
MlyI	GAGTC	3 cut(s)	62, 566, 608
MroNI	GCCGGC	1 cut(s)	499
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	673
MspI	CCGG	3 cut(s)	372, 494, 500
Mva1269I	GAATGC	2 cut(s)	194, 680
MvnI	CGCG	2 cut(s)	242, 299
MwoI	GCNNNNNNNGC	5 cut(s)	144, 248, 368, 377, 490
NaeI	GCCGGC	1 cut(s)	501
NdeII	GATC	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	499
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	7 cut(s)	188, 252, 314, 315, 349, 412, 498
NmeAIII	GCCGAG	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 351
PctI	GAATGC	2 cut(s)	194, 680
PdiI	GCCGGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	282, 301, 394, 586
PleI	GAGTC	3 cut(s)	61, 566, 608
PpsI	GAGTC	3 cut(s)	61, 566, 608
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
PspN4I	GGNNCC	7 cut(s)	188, 252, 314, 315, 349, 412, 498
PspPI	GGNCC	2 cut(s)	313, 466
PspPPI	RGGWCCY	1 cut(s)	313
RsaI	GTAC	2 cut(s)	130, 296
RsaNI	GTAC	2 cut(s)	129, 295
RseI	CAYNNNNRTG	1 cut(s)	673
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	4 cut(s)	281, 300, 393, 585
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	2 cut(s)	313, 466
SchI	GAGTC	3 cut(s)	62, 566, 608
SduI	GDGCHC	2 cut(s)	46, 660
SfaNI	GCATC	4 cut(s)	76, 157, 358, 512
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	673
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	2 cut(s)	206, 635
SsiI	CCGC	8 cut(s)	40, 170, 184, 224, 280, 299, 362, 393
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	2 cut(s)	130, 524
TaqI	TCGA	4 cut(s)	26, 56, 87, 158
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	2 cut(s)	206, 635
TauI	GCSGC	3 cut(s)	283, 302, 395
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	2 cut(s)	154, 169
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	587, 594
TspGWI	ACGGA	2 cut(s)	50, 498
TspRI	CASTG	2 cut(s)	154, 169
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	206
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.