Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004245

Physical Location & Seq

Genomic Coordinates Reverse (-)

26041065 .. 26042360

Gene Structure 1296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0188400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCTGGGTTCGGTAATCGACATTGAGAATCCTCAGGTTACCGGAAACAGGGGATACCTAAGGATGAGGATAGATTTCGATATCACAAGACCTCTAGCCATTTTCATCCAGCTCCCACGTTCTAATTCCACTGTTTCTAAAATCAGATATGTCAAGCATCCTCTCTTGGTCAAGATGGGAGTTGTCTATGATTTGTCTTTGGTTGCGGATGCTCCCCAGAAGCCAGTCTTTACTCAAGATCACTTTCCATTGGAGTTCCCATATGCTCTGACGACAGGCATTTTTCGCCAGAATCCTGAAATTGCTGCTGCATCTGATGTGGACAGACCTACATTGGCACACCCTTCAACTATTGAAAGGGACAGCTCCAGCAGCACTCTGCCAACAATGAAAGGTACCACTCAGTCCCCTATTGTGATACAAAGACCAAAGCTATGCTTACAACCTGACATGCCTAGTATGTGGAATCCCAATGCACATGGGGTTTTCTACCGCAATGGGAGTGTAACTCGGGCCTTTAGTGGGCTGCGCATACATTCTGAGTCTTGGGCTGACCCGGAATGTCTCCCCCCTTGGGCTTTCAAAAACAGGGTGGATTATTTAAATGCCAATCATTTTTTCCCGATTCCCATGAAGACGGACCCTTTGAATGGGCTCATATCACCTAAACCAAAATCAGTGGAAATTGTGGAACTGGGCCAATCAAACTTGGTTTCTACACAGGGCTGTACCGATTCTGCTGAAGAGGGGACAAGCACAGCTGCTGGGCAGACTGGTCTTTCACGTCCACACATGAGTACGGCTGCAGCGGTGTACCTTCCCCCAGCTATGGCAAATTTTCCTTCTGAATCTGAACTGAGTTTACCCACAAAAAGGAAGAGATACACAAAGACCAAAGATGGGACTAAAGATACGGGAGGAAAGAAGGCAAAAGTGGTACGCAGCCCTAGTCTTCGTCTATCTTCCGGAGGTGGGAGAGCTAGGGGAAGGGGTAGAGGTGGAAGAGTTGGAAGAGGTAGGGGTAAAATTACTGCTGAGCCAACTGATCCCATGGTTGATAGTTCTACTGTTTTGGGCTCCTTTCCTACCAAACTAGGAAGCGAGGGTATGGAACCTAGCTCTTTTGCATCGAATCTTATCACTAAAGGTATGGAGGATTTAACCCACCTCCAGGGCTGTGGCAGCTGGCCGAATACAGCTGCACGAAATCAATTATGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

407

Amino Acids

44.29

Weight (kDa)

9.56

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10070 FvH4_7g10080
malus_domestica	MD07G1106200.v1.1 MD07G1106300.v1.1
prunus_persica	Prupe.2G129600_v2.0.a1
pyrus_communis	pycom07g09090
rosa_chinensis	RchiOBHm_Chr1g0347641 RchiOBHm_Chr1g0347661 RchiOBHm_Chr1g0347671
rosa_laevigata	RLG00000028721 RLG00000028722 RLG00000028724
rosa_multiflora	Rmu_co8415911.1_g000001 Rmu_co8487513.1_g000001 Rmu_sc0025693.1_g000001 Rmu_sc0025693.1_g000002 Rmu_sc0025693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307530 Rroxscaffold_4G00307540
rosa_rugosa	Rorug01G0188400 Rorug01G0188600
rosa_samantha	Rh1AG206200 Rh1AG206300 Rh1AG206400 Rh1BG171500 Rh1BG171700 Rh1BG171800 Rh1DG201500 Rh1DG201600 Rh1DG201700
rosa_wichuraiana	Rw1G017250 Rw1G017260 Rw1G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	530
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	965
AciI	CCGC	3 cut(s)	206, 493, 809
AclWI	GGATC	1 cut(s)	1040
AcoI	YGGCCR	1 cut(s)	1187
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	5 cut(s)	397, 730, 799, 815, 939
AfiI	CCNNNNNNNGG	9 cut(s)	48, 522, 574, 650, 829, 873, 900, 972, 1171
AgsI	TTSAA	4 cut(s)	348, 356, 583, 649
AjiI	CACGTC	1 cut(s)	785
AjnI	CCWGG	1 cut(s)	1170
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	9 cut(s)	112, 366, 433, 761, 827, 980, 1119, 1185, 1199
AluI	AGCT	9 cut(s)	112, 366, 433, 761, 827, 980, 1119, 1185, 1199
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	1040
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	965
AoxI	GGCC	3 cut(s)	513, 697, 1187
ApoI	RAATTY	1 cut(s)	835
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
Asp718I	GGTACC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	513, 640, 697
AsuC2I	CCSGG	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	640
AxyI	CCTNAGG	2 cut(s)	33, 59
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	657, 1079
BbsI	GAAGAC	2 cut(s)	641, 944
BccI	CCATC	2 cut(s)	169, 893
BceAI	ACGGC	1 cut(s)	816
BciT130I	CCWGG	1 cut(s)	1172
BciVI	GTATCC	1 cut(s)	47
BcnI	CCSGG	1 cut(s)	557
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	7 cut(s)	95, 456, 948, 981, 1094, 1116, 1222
BfmI	CTRYAG	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	1035
Bme1390I	CCNGG	2 cut(s)	557, 1172
Bme18I	GGWCC	1 cut(s)	640
BmeT110I	CYCGRG	1 cut(s)	510
BmgBI	CACGTC	1 cut(s)	785
BmgT120I	GGNCC	3 cut(s)	513, 640, 697
BmiI	GGNNCC	4 cut(s)	397, 642, 1078, 1113
BmrFI	CCNGG	2 cut(s)	557, 1172
BmrI	ACTGGG	1 cut(s)	704
BmsI	GCATC	4 cut(s)	166, 199, 320, 1136
BmuI	ACTGGG	1 cut(s)	704
BpiI	GAAGAC	2 cut(s)	641, 944
BplI	GAGNNNNNCTC	2 cut(s)	493, 525
BpmI	CTGGAG	2 cut(s)	352, 1154
Bpu1102I	GCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	557
BsaJI	CCNNGG	3 cut(s)	572, 1050, 1171
BsaWI	WCCGGW	2 cut(s)	41, 965
Bsc4I	CCNNNNNNNGG	9 cut(s)	48, 522, 574, 650, 829, 873, 900, 972, 1171
Bse1I	ACTGG	3 cut(s)	224, 699, 778
Bse21I	CCTNAGG	2 cut(s)	33, 59
Bse3DI	GCAATG	1 cut(s)	502
BseAI	TCCGGA	1 cut(s)	965
BseBI	CCWGG	1 cut(s)	1172
BseDI	CCNNGG	3 cut(s)	572, 1050, 1171
BseGI	GGATG	4 cut(s)	69, 105, 157, 214
BseLI	CCNNNNNNNGG	9 cut(s)	48, 522, 574, 650, 829, 873, 900, 972, 1171
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	5 cut(s)	47, 416, 531, 848, 1026
BseNI	ACTGG	3 cut(s)	224, 699, 778
BseYI	CCCAGC	3 cut(s)	4, 764, 823
BsgI	GTGCAG	1 cut(s)	1185
BshFI	GGCC	3 cut(s)	515, 699, 1189
BshNI	GGYRCC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	42, 557, 966
BslFI	GGGAC	4 cut(s)	374, 391, 763, 916
BslI	CCNNNNNNNGG	9 cut(s)	48, 522, 574, 650, 829, 873, 900, 972, 1171
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	4 cut(s)	374, 391, 763, 916
BsnI	GGCC	3 cut(s)	515, 699, 1189
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	2 cut(s)	657, 1079
Bsp13I	TCCGGA	1 cut(s)	965
Bsp143I	GATC	2 cut(s)	238, 1045
Bsp1720I	GCTNAGC	1 cut(s)	1035
Bsp19I	CCATGG	1 cut(s)	1050
BspACI	CCGC	3 cut(s)	206, 493, 809
BspANI	GGCC	3 cut(s)	515, 699, 1189
BspCNI	CTCAG	5 cut(s)	46, 415, 532, 849, 1027
BspEI	TCCGGA	1 cut(s)	965
BspLI	GGNNCC	4 cut(s)	397, 642, 1078, 1113
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	1040
BspT107I	GGYRCC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	224, 699, 778
BssECI	CCNNGG	3 cut(s)	572, 1050, 1171
BssMI	GATC	2 cut(s)	238, 1045
BssT1I	CCWWGG	2 cut(s)	572, 1050
Bst2UI	CCWGG	1 cut(s)	1172
Bst4CI	ACNGT	2 cut(s)	133, 1069
Bst6I	CTCTTC	4 cut(s)	738, 872, 997, 1006
BstC8I	GCNNGC	1 cut(s)	1187
BstDEI	CTNAG	6 cut(s)	33, 59, 402, 540, 857, 1035
BstDSI	CCRYGG	1 cut(s)	1050
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	4 cut(s)	69, 105, 157, 214
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	2 cut(s)	241, 1048
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	2 cut(s)	238, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 372, 1182
BstNI	CCWGG	1 cut(s)	1172
BstNSI	RCATGY	1 cut(s)	454
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	555, 1170
BstSFI	CTRYAG	1 cut(s)	804
BstV2I	GAAGAC	2 cut(s)	641, 944
BstXI	CCANNNNNNTGG	1 cut(s)	1178
Bsu36I	CCTNAGG	2 cut(s)	33, 59
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	515, 699, 1189
BtgI	CCRYGG	1 cut(s)	1050
BtrI	CACGTC	1 cut(s)	785
BtsCI	GGATG	4 cut(s)	69, 105, 157, 214
BtsIMutI	CAGTG	2 cut(s)	129, 684
Cac8I	GCNNGC	1 cut(s)	1187
CaiI	CAGNNNCTG	1 cut(s)	764
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	513, 640, 697
Csp6I	GTAC	5 cut(s)	396, 729, 798, 814, 938
CspCI	CAANNNNNGTGG	2 cut(s)	660, 695
CviAII	CATG	5 cut(s)	451, 479, 631, 793, 1051
CviQI	GTAC	5 cut(s)	396, 729, 798, 814, 938
DdeI	CTNAG	6 cut(s)	33, 59, 402, 540, 857, 1035
DpnI	GATC	2 cut(s)	240, 1047
DpnII	GATC	2 cut(s)	238, 1045
DraI	TTTAAA	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	1187
Eam1104I	CTCTTC	4 cut(s)	738, 872, 997, 1006
EarI	CTCTTC	4 cut(s)	738, 872, 997, 1006
Eco130I	CCWWGG	2 cut(s)	572, 1050
Eco24I	GRGCYC	2 cut(s)	657, 1079
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	762
Eco81I	CCTNAGG	2 cut(s)	33, 59
Eco88I	CYCGRG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	1170
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	572, 1050
EcoT38I	GRGCYC	2 cut(s)	657, 1079
ErhI	CCWWGG	2 cut(s)	572, 1050
FaeI	CATG	5 cut(s)	454, 482, 634, 796, 1054
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 422, 454
FaqI	GGGAC	4 cut(s)	374, 391, 763, 916
FatI	CATG	5 cut(s)	450, 478, 630, 792, 1050
FauNDI	CATATG	1 cut(s)	262
FokI	GGATG	4 cut(s)	76, 92, 144, 221
FriOI	GRGCYC	2 cut(s)	657, 1079
FspBI	CTAG	7 cut(s)	95, 456, 948, 981, 1094, 1116, 1222
FspI	TGCGCA	1 cut(s)	530
GlaI	GCGC	1 cut(s)	530
GsaI	CCCAGC	3 cut(s)	8, 768, 827
GsuI	CTGGAG	2 cut(s)	352, 1154
HaeIII	GGCC	3 cut(s)	515, 699, 1189
HapII	CCGG	3 cut(s)	42, 557, 966
HhaI	GCGC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	454, 482, 634, 796, 1054
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HinfI	GANTC	8 cut(s)	28, 292, 466, 542, 625, 734, 848, 1132
HpaII	CCGG	3 cut(s)	42, 557, 966
HphI	GGTGA	1 cut(s)	654
Hpy166II	GTNNAC	4 cut(s)	322, 788, 814, 863
Hpy188I	TCNGA	6 cut(s)	146, 270, 316, 541, 847, 853
Hpy188III	TCNNGA	5 cut(s)	172, 236, 296, 622, 966
Hpy8I	GTNNAC	4 cut(s)	322, 788, 814, 863
HpyAV	CCTTC	5 cut(s)	354, 827, 852, 919, 981
HpyCH4III	ACNGT	2 cut(s)	133, 1069
HpyCH4IV	ACGT	2 cut(s)	118, 784
HpyCH4V	TGCA	5 cut(s)	311, 476, 806, 1127, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 372, 1182
HpyF3I	CTNAG	6 cut(s)	33, 59, 402, 540, 857, 1035
HpySE526I	ACGT	2 cut(s)	118, 784
Hsp92II	CATG	5 cut(s)	454, 482, 634, 796, 1054
HspAI	GCGC	1 cut(s)	529
Kpn2I	TCCGGA	1 cut(s)	965
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	238, 1045
LmnI	GCTCC	4 cut(s)	117, 217, 371, 1082
LweI	GCATC	4 cut(s)	166, 199, 320, 1136
MaeI	CTAG	7 cut(s)	95, 456, 948, 981, 1094, 1116, 1222
MaeII	ACGT	2 cut(s)	118, 784
MaeIII	GTNAC	2 cut(s)	37, 505
MalI	GATC	2 cut(s)	240, 1047
MboI	GATC	2 cut(s)	238, 1045
MboII	GAAGA	7 cut(s)	646, 755, 889, 944, 954, 1014, 1023
MhlI	GDGCHC	2 cut(s)	657, 1079
MluCI	AATT	6 cut(s)	124, 300, 684, 835, 1026, 1211
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	988
MroI	TCCGGA	1 cut(s)	965
MseI	TTAA	2 cut(s)	602, 1160
MspA1I	CMGCKG	4 cut(s)	761, 809, 1185, 1199
MspI	CCGG	3 cut(s)	42, 557, 966
MspR9I	CCNGG	2 cut(s)	557, 1172
MvaI	CCWGG	1 cut(s)	1172
MwoI	GCNNNNNNNGC	3 cut(s)	285, 372, 1182
NciI	CCSGG	1 cut(s)	557
NcoI	CCATGG	1 cut(s)	1050
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	238, 1045
NlaIII	CATG	5 cut(s)	454, 482, 634, 796, 1054
NlaIV	GGNNCC	4 cut(s)	397, 642, 1078, 1113
NsbI	TGCGCA	1 cut(s)	530
NspI	RCATGY	1 cut(s)	454
PfeI	GAWTC	7 cut(s)	28, 292, 466, 625, 734, 848, 1132
PleI	GAGTC	1 cut(s)	550
PpsI	GAGTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	1170
PspEI	GGTNACC	1 cut(s)	37
PspFI	CCCAGC	3 cut(s)	4, 764, 823
PspGI	CCWGG	1 cut(s)	1170
PspN4I	GGNNCC	4 cut(s)	397, 642, 1078, 1113
PspPI	GGNCC	3 cut(s)	513, 640, 697
PsrI	GAACNNNNNNTAC	2 cut(s)	846, 878
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	764
PvuII	CAGCTG	3 cut(s)	761, 1185, 1199
RsaI	GTAC	5 cut(s)	397, 730, 799, 815, 939
RsaNI	GTAC	5 cut(s)	396, 729, 798, 814, 938
SaqAI	TTAA	2 cut(s)	602, 1160
Sau3AI	GATC	2 cut(s)	238, 1045
Sau96I	GGNCC	3 cut(s)	513, 640, 697
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	2 cut(s)	557, 1172
SduI	GDGCHC	2 cut(s)	657, 1079
SfaNI	GCATC	4 cut(s)	166, 199, 320, 1136
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	640
SmiI	ATTTAAAT	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	6 cut(s)	124, 300, 684, 835, 1026, 1211
SsiI	CCGC	3 cut(s)	206, 493, 809
SspMI	CTAG	7 cut(s)	95, 456, 948, 981, 1094, 1116, 1222
StyD4I	CCNGG	2 cut(s)	555, 1170
StyI	CCWWGG	2 cut(s)	572, 1050
SwaI	ATTTAAAT	1 cut(s)	603
TaaI	ACNGT	2 cut(s)	133, 1069
TaiI	ACGT	2 cut(s)	121, 787
TaqI	TCGA	3 cut(s)	18, 78, 1130
TasI	AATT	6 cut(s)	124, 300, 684, 835, 1026, 1211
TfiI	GAWTC	7 cut(s)	28, 292, 466, 625, 734, 848, 1132
Tru1I	TTAA	2 cut(s)	602, 1160
Tru9I	TTAA	2 cut(s)	602, 1160
TscAI	CASTG	2 cut(s)	136, 684
TspDTI	ATGAA	3 cut(s)	94, 404, 647
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	136, 684
VpaK11BI	GGWCC	1 cut(s)	640
XapI	RAATTY	1 cut(s)	835
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	7 cut(s)	95, 456, 948, 981, 1094, 1116, 1222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.