Rh1AG206200

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004245
Physical Location & Seq
Forward (+)
39039704 .. 39040426
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG206200.1

Sequence Viewer

Length: 723 bp
ATGTCCATAGAAACCGAAAGCTTCTCGAACTCAGACTGGCGGGCTCTCTTGGAGTCGATCCGTCAGCATCTTCTTGACGACGATTTCGATACCCAGTTGGGTTTTTTCGCTGATTCTCCTGCTCAAAGTACTTCCAGCTCTAACAGCACTGAGATATCGAACAGTGATGCGGAGATAGTGGGGCAGAACCAAGCATTCACTAGTGAATTTGAGGAGGAGGTTGCGGAGCGTAAACACCACGCGCCATCGGCACCGAGGCATTTTAGGGGAGTGAGGAGGCGGCCGTGGGGAAAGTACGCGGCGGAGATAAGGGACCCGAAGAAGAACGGGATGAGAGTGTGGCTCGGAACCTACGAGACGGCGGAGGATGCCGGATTGGCTTACGACCGAGCCGCTTTCAAAATGCGTGGCTCCAAAGCTAAGCTTAACTTTCCTCACTTGATTGGCACGCATGATATGGAGGTGGGCCGTGTGTTTCCCAAGCGTGCCTCGCCGGAGCCGTCATCTCCGTCCTCCACGACGTCGTCTGAAGATGGCTCGCCGAAGCCAAAGAGGAGGAGGGGTGGAGTGGACTCGGCTGCGGCGAAAGCCAAGTTGGATGAAGCTGCTCGAGAGTTTCATCTGTTCCAAGTGGACTCATTCACATTTGGCAACGAATTATTGGTTGAGGATATGGTGCTCTTGTCACCATCTGAATGCTCAGATATTCTTTCTTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

240

Amino Acids

26.71

Weight (kDa)

5.44

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 87 - 138 8.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 250
AccII CGCG 2 cut(s) 242, 299
AciI CCGC 9 cut(s) 40, 170, 224, 280, 299, 302, 362, 393, 581
AclWI GGATC 1 cut(s) 52
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 521
AfaI GTAC 2 cut(s) 130, 296
AgsI TTSAA 1 cut(s) 400
AhlI ACTAGT 1 cut(s) 200
AjuI GAANNNNNNNTTGG 2 cut(s) 578, 610
AluBI AGCT 5 cut(s) 21, 138, 419, 424, 605
AluI AGCT 5 cut(s) 21, 138, 419, 424, 605
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 1 cut(s) 350
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 2 cut(s) 281, 466
ApeKI GCWGC 2 cut(s) 578, 605
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 313, 466
AsuHPI GGTGA 1 cut(s) 678
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 681
BbvI GCAGC 2 cut(s) 565, 592
BccI CCATC 3 cut(s) 253, 527, 697
BceAI ACGGC 4 cut(s) 268, 375, 453, 484
BcoDI GTCTC 1 cut(s) 350
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 6 cut(s) 281, 300, 393, 579, 582, 606
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 6 cut(s) 282, 301, 394, 580, 583, 607
BmcAI AGTACT 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 2 cut(s) 313, 466
BmiI GGNNCC 6 cut(s) 252, 314, 315, 349, 412, 498
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 3 cut(s) 76, 157, 358
BmuI ACTGGG 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 327, 359
Bpu1102I GCTNAGC 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 254, 284
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bse1I ACTGG 2 cut(s) 41, 94
BseDI CCNNGG 2 cut(s) 254, 284
BseGI GGATG 3 cut(s) 336, 373, 604
BseMII CTCAG 3 cut(s) 45, 141, 714
BseNI ACTGG 2 cut(s) 41, 94
BseRI GAGGAG 5 cut(s) 227, 230, 289, 568, 571
BseX3I CGGCCG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 565, 592
Bsh1236I CGCG 2 cut(s) 242, 299
Bsh1285I CGRYCG 2 cut(s) 284, 388
BshFI GGCC 2 cut(s) 283, 468
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 2 cut(s) 284, 388
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 609
BsiSI CCGG 2 cut(s) 372, 494
BslFI GGGAC 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 350
BsmBI CGTCTC 1 cut(s) 350
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 2 cut(s) 194, 701
BsnI GGCC 2 cut(s) 283, 468
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 2 cut(s) 46, 681
Bsp143I GATC 1 cut(s) 57
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 9 cut(s) 40, 170, 224, 280, 299, 302, 362, 393, 581
BspANI GGCC 2 cut(s) 283, 468
BspCNI CTCAG 3 cut(s) 44, 142, 713
BspFNI CGCG 2 cut(s) 242, 299
BspLI GGNNCC 6 cut(s) 252, 314, 315, 349, 412, 498
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 250
BsrI ACTGG 2 cut(s) 41, 94
BssECI CCNNGG 2 cut(s) 254, 284
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 521
Bst4CI ACNGT 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 521
BstC8I GCNNGC 4 cut(s) 42, 449, 486, 539
BstDEI CTNAG 4 cut(s) 31, 150, 420, 700
BstDSI CCRYGG 1 cut(s) 284
BstF5I GGATG 3 cut(s) 336, 373, 604
BstFNI CGCG 2 cut(s) 242, 299
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 350
BstMBI GATC 1 cut(s) 57
BstMCI CGRYCG 2 cut(s) 284, 388
BstMWI GCNNNNNNNGC 6 cut(s) 144, 248, 368, 377, 490, 587
BstUI CGCG 2 cut(s) 242, 299
BstV1I GCAGC 2 cut(s) 565, 592
BstZI CGGCCG 1 cut(s) 281
BsuRI GGCC 2 cut(s) 283, 468
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 3 cut(s) 336, 373, 604
BtsIMutI CAGTG 2 cut(s) 147, 169
Cac8I GCNNGC 4 cut(s) 42, 449, 486, 539
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 313, 466
Csp6I GTAC 2 cut(s) 129, 295
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 1 cut(s) 452
CviQI GTAC 2 cut(s) 129, 295
DdeI CTNAG 4 cut(s) 31, 150, 420, 700
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 281
EagI CGGCCG 1 cut(s) 281
EciI GGCGGA 2 cut(s) 317, 377
EclXI CGGCCG 1 cut(s) 281
Eco24I GRGCYC 1 cut(s) 46
Eco32I GATATC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 313
Eco52I CGGCCG 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 313
EcoRV GATATC 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 1 cut(s) 455
FaiI YATR 4 cut(s) 8, 453, 458, 674
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 413, 445
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 451
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 6 cut(s) 281, 300, 393, 579, 582, 606
FokI GGATG 3 cut(s) 343, 380, 611
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 6 cut(s) 281, 300, 393, 579, 582, 606
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 243
GluI GCNGC 6 cut(s) 281, 300, 393, 579, 582, 606
HaeIII GGCC 2 cut(s) 283, 468
HapII CCGG 2 cut(s) 372, 494
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 1 cut(s) 455
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 2 cut(s) 19, 422
HinfI GANTC 4 cut(s) 53, 113, 572, 635
HpaII CCGG 2 cut(s) 372, 494
HphI GGTGA 1 cut(s) 678
Hpy166II GTNNAC 3 cut(s) 233, 571, 634
Hpy188I TCNGA 5 cut(s) 34, 347, 529, 694, 703
Hpy188III TCNNGA 3 cut(s) 25, 74, 611
Hpy8I GTNNAC 3 cut(s) 233, 571, 634
Hpy99I CGWCG 3 cut(s) 83, 523, 526
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 6 cut(s) 144, 248, 368, 377, 490, 587
HpyF3I CTNAG 4 cut(s) 31, 150, 420, 700
HpySE526I ACGT 1 cut(s) 521
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 1 cut(s) 455
HspAI GCGC 1 cut(s) 242
KflI GGGWCCC 1 cut(s) 313
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 3 cut(s) 226, 416, 496
LpnPI CCDG 6 cut(s) 22, 107, 132, 148, 385, 507
Lsp1109I GCAGC 2 cut(s) 565, 592
LweI GCATC 3 cut(s) 76, 157, 358
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 684
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 62, 331, 334, 542
MhlI GDGCHC 2 cut(s) 46, 681
MluCI AATT 2 cut(s) 206, 656
MlyI GAGTC 3 cut(s) 62, 566, 629
MmeI TCCRAC 1 cut(s) 576
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 694
MspI CCGG 2 cut(s) 372, 494
Mva1269I GAATGC 2 cut(s) 194, 701
MvnI CGCG 2 cut(s) 242, 299
MwoI GCNNNNNNNGC 6 cut(s) 144, 248, 368, 377, 490, 587
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 455
NlaIV GGNNCC 6 cut(s) 252, 314, 315, 349, 412, 498
NmeAIII GCCGAG 1 cut(s) 554
NmuCI GTSAC 1 cut(s) 684
PaeR7I CTCGAG 1 cut(s) 609
PcsI WCGNNNNNNNCGW 4 cut(s) 84, 351, 497, 581
PctI GAATGC 2 cut(s) 194, 701
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 523
PkrI GCNGC 6 cut(s) 282, 301, 394, 580, 583, 607
PleI GAGTC 3 cut(s) 61, 566, 629
PpsI GAGTC 3 cut(s) 61, 566, 629
PpuMI RGGWCCY 1 cut(s) 313
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 6 cut(s) 252, 314, 315, 349, 412, 498
PspPI GGNCC 2 cut(s) 313, 466
PspPPI RGGWCCY 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 523
RsaI GTAC 2 cut(s) 130, 296
RsaNI GTAC 2 cut(s) 129, 295
RseI CAYNNNNRTG 1 cut(s) 694
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 6 cut(s) 281, 300, 393, 579, 582, 606
Sau3AI GATC 1 cut(s) 57
Sau96I GGNCC 2 cut(s) 313, 466
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 3 cut(s) 62, 566, 629
SduI GDGCHC 2 cut(s) 46, 681
SetI ASST 9 cut(s) 23, 140, 222, 353, 421, 426, 465, 524, 607
SfaNI GCATC 3 cut(s) 76, 157, 358
Sfr274I CTCGAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
SpeI ACTAGT 1 cut(s) 200
Sse9I AATT 2 cut(s) 206, 656
SsiI CCGC 9 cut(s) 40, 170, 224, 280, 299, 302, 362, 393, 581
SspMI CTAG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 164
TaiI ACGT 1 cut(s) 524
TaqI TCGA 5 cut(s) 26, 56, 87, 158, 610
TaqII GACCGA 1 cut(s) 402
TasI AATT 2 cut(s) 206, 656
TatI WGTACW 1 cut(s) 128
TauI GCSGC 4 cut(s) 283, 302, 395, 584
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 154, 169
TseFI GTSAC 1 cut(s) 684
TseI GCWGC 2 cut(s) 578, 605
Tsp45I GTSAC 1 cut(s) 684
TspDTI ATGAA 2 cut(s) 608, 615
TspGWI ACGGA 2 cut(s) 50, 498
TspRI CASTG 2 cut(s) 154, 169
Tth111I GACNNNGTC 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 609
XspI CTAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 522
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.