Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025693.1

Orthogroup ID

OG0004245

Physical Location & Seq

Genomic Coordinates Reverse (-)

16100 .. 16399

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025693.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcgtggctccaaagctaagcttaactttcctcacttgattggcacgcatgatatggaggtgggccgtgtgtttcccaagcgtgcctcgccggagccggcatctccgtcctccacaacgtcgtctgaagatggctcgccgaagccaaagaggaggaggggtggagtggactcggatgaagctgctcaagagtttcatctgttccaagtggactcattcacatttggcaacgaattattggttgaggatatggtgctcttatcaccatctgaatgctcagacattctttcttttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

99

Amino Acids

10.85

Weight (kDa)

5.26

Isoelectric Point (pI)

73.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10070 FvH4_7g10080
malus_domestica	MD07G1106200.v1.1 MD07G1106300.v1.1
prunus_persica	Prupe.2G129600_v2.0.a1
pyrus_communis	pycom07g09090
rosa_chinensis	RchiOBHm_Chr1g0347641 RchiOBHm_Chr1g0347661 RchiOBHm_Chr1g0347671
rosa_laevigata	RLG00000028721 RLG00000028722 RLG00000028724
rosa_multiflora	Rmu_co8415911.1_g000001 Rmu_co8487513.1_g000001 Rmu_sc0025693.1_g000001 Rmu_sc0025693.1_g000002 Rmu_sc0025693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307530 Rroxscaffold_4G00307540
rosa_rugosa	Rorug01G0188400 Rorug01G0188600
rosa_samantha	Rh1AG206200 Rh1AG206300 Rh1AG206400 Rh1BG171500 Rh1BG171700 Rh1BG171800 Rh1DG201500 Rh1DG201600 Rh1DG201700
rosa_wichuraiana	Rw1G017250 Rw1G017260 Rw1G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	17, 22, 182
AluI	AGCT	3 cut(s)	17, 22, 182
Alw21I	GWGCWC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	125, 274
BceAI	ACGGC	1 cut(s)	51
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	10, 96
BmsI	GCATC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse118I	RCCGGY	1 cut(s)	97
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	2 cut(s)	166, 169
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	92, 98
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp1720I	GCTNAGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	10, 96
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BstC8I	GCNNGC	4 cut(s)	47, 84, 99, 137
BstDEI	CTNAG	2 cut(s)	18, 277
BstF5I	GGATG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	4 cut(s)	47, 84, 99, 137
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	8 cut(s)	9, 17, 22, 66, 97, 135, 145, 182
CviKI_1	RGCY	8 cut(s)	9, 17, 22, 66, 97, 135, 145, 182
DdeI	CTNAG	2 cut(s)	18, 277
Eco57I	CTGAAG	1 cut(s)	147
FaeI	CATG	1 cut(s)	53
FaiI	YATR	3 cut(s)	51, 56, 251
FalI	AAGNNNNNCTT	3 cut(s)	38, 11, 43
FatI	CATG	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	92, 98
Hin1II	CATG	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	170, 212
HpaII	CCGG	2 cut(s)	92, 98
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	2 cut(s)	169, 211
Hpy188I	TCNGA	4 cut(s)	127, 175, 271, 280
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	169, 211
Hpy99I	CGWCG	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
HpyF3I	CTNAG	2 cut(s)	18, 277
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	53
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	14, 94
LpnPI	CCDG	2 cut(s)	105, 111
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	119
MboII	GAAGA	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	164, 206
MnlI	CCTC	8 cut(s)	42, 52, 97, 121, 144, 147, 150, 238
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	271
MspI	CCGG	2 cut(s)	92, 98
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	88
NaeI	GCCGGC	1 cut(s)	99
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	10, 96
PctI	GAATGC	1 cut(s)	278
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	164, 206
PpsI	GAGTC	2 cut(s)	164, 206
PspN4I	GGNNCC	2 cut(s)	10, 96
PspPI	GGNCC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	2 cut(s)	164, 206
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	5 cut(s)	19, 24, 63, 122, 184
SfaNI	GCATC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	233
TaiI	ACGT	1 cut(s)	122
TasI	AATT	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	185, 192
TspGWI	ACGGA	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.