Rh1AG206400

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004245
Physical Location & Seq
Forward (+)
39047830 .. 39048420
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG206400.1

Sequence Viewer

Length: 591 bp
ATGTCCACAGAAACTGAAAGCTTCTCAAACTCGAACTGGGCTCTCTTGGAATCCATCCGCCAACATCTTCTAGACGACGATTTTGAATTTGATACCCAGTCGGCATTTTTTGCAAACTCTCCCGCTCAAAGTACTTCAATCTCTAGCCGAATTGAAATATCGAGCAACGACTTGGAGATCGTGGAGGAGCCGAACCAAGTGTTCACGTGTAAACTGGAGGTGGAGGTGGCGGAGCGTGAACACAGCACGCCGTCGAGGGAGAGGCATAATTTTAGGGGCGTGAGGAGGCGGCCATGGGGAAAGTACGCGGCGGAGATAAGGGACCCAAAAAAGAACGGGACCAGAGTGTGGCTCGGTACCTATGAGAGGGCGGAGGACGCAGGCTTGGCTTACGACCGAGCTGCTTTCAAAATGCGTGGCTCCAAAGCTAAGCTTAACTTTCCTCACTTGATTGGCACGCATGATATGGAAGTGGGCCGTGTCCTTCCCAAGCGTGCCTCGCCGGAGCTGTCATCTCCGTCGTCAGTAGATGGATCGCCGAAGCCTAAGAGGAGGAGGAGTGGAGTGGACTCGACAGCCGCGAAAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

196

Amino Acids

22.06

Weight (kDa)

7.89

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 91 - 141 3.3e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 125
AccII CGCG 2 cut(s) 308, 581
AciI CCGC 8 cut(s) 58, 123, 230, 289, 308, 311, 371, 579
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 1 cut(s) 86
AcvI CACGTG 1 cut(s) 207
AfaI GTAC 3 cut(s) 133, 305, 358
AfiI CCNNNNNNNGG 2 cut(s) 348, 366
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 4 cut(s) 86, 138, 155, 409
AluBI AGCT 5 cut(s) 21, 401, 428, 433, 508
AluI AGCT 5 cut(s) 21, 401, 428, 433, 508
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 2 cut(s) 290, 475
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp718I GGTACC 1 cut(s) 356
AspS9I GGNCC 3 cut(s) 322, 339, 475
AvaII GGWCC 2 cut(s) 322, 339
BanI GGYRCC 1 cut(s) 356
BanII GRGCYC 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 207
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 62, 524
BceAI ACGGC 2 cut(s) 235, 462
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BfaI CTAG 3 cut(s) 71, 144, 589
BisI GCNGC 4 cut(s) 290, 309, 402, 579
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 4 cut(s) 291, 310, 403, 580
BmcAI AGTACT 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 322, 339
BmgT120I GGNCC 3 cut(s) 322, 339, 475
BmiI GGNNCC 6 cut(s) 189, 323, 324, 340, 358, 421
BmrI ACTGGG 2 cut(s) 46, 91
BmuI ACTGGG 2 cut(s) 46, 91
BplI GAGNNNNNCTC 2 cut(s) 336, 368
BpmI CTGGAG 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 544, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 348, 366
Bse1I ACTGG 3 cut(s) 41, 97, 219
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 348, 366
BseNI ACTGG 3 cut(s) 41, 97, 219
BseRI GAGGAG 5 cut(s) 200, 298, 565, 568, 571
BseXI GCAGC 1 cut(s) 388
Bsh1236I CGCG 2 cut(s) 308, 581
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 2 cut(s) 292, 477
BshNI GGYRCC 1 cut(s) 356
BsiEI CGRYCG 1 cut(s) 397
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 2 cut(s) 335, 352
BslI CCNNNNNNNGG 2 cut(s) 348, 366
BsmFI GGGAC 2 cut(s) 335, 352
BsnI GGCC 2 cut(s) 292, 477
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 177, 533
Bsp1720I GCTNAGC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 293
BspACI CCGC 8 cut(s) 58, 123, 230, 289, 308, 311, 371, 579
BspANI GGCC 2 cut(s) 292, 477
BspFNI CGCG 2 cut(s) 308, 581
BspLI GGNNCC 6 cut(s) 189, 323, 324, 340, 358, 421
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 125
BsrI ACTGG 3 cut(s) 41, 97, 219
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 2 cut(s) 177, 533
BssT1I CCWWGG 1 cut(s) 293
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 248, 382, 458, 495
BstDEI CTNAG 2 cut(s) 429, 546
BstDSI CCRYGG 1 cut(s) 293
BstENI CCTNNNNNAGG 1 cut(s) 364
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 2 cut(s) 308, 581
BstKTI GATC 2 cut(s) 180, 536
BstMBI GATC 2 cut(s) 177, 533
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 5 cut(s) 110, 377, 386, 499, 584
BstUI CGCG 2 cut(s) 308, 581
BstV1I GCAGC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 292, 477
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 248, 382, 458, 495
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 322, 339, 475
CseI GACGC 1 cut(s) 386
Csp6I GTAC 3 cut(s) 132, 304, 357
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 2 cut(s) 294, 461
CviQI GTAC 3 cut(s) 132, 304, 357
DdeI CTNAG 2 cut(s) 429, 546
DpnI GATC 2 cut(s) 179, 535
DpnII GATC 2 cut(s) 177, 533
EaeI YGGCCR 1 cut(s) 290
EciI GGCGGA 4 cut(s) 47, 245, 326, 386
Eco130I CCWWGG 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 322, 339
Eco72I CACGTG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoO109I RGGNCCY 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 2 cut(s) 297, 464
FaiI YATR 5 cut(s) 267, 295, 363, 462, 467
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 422, 454
FaqI GGGAC 2 cut(s) 335, 352
FatI CATG 2 cut(s) 293, 460
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 290, 309, 402, 579
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 290, 309, 402, 579
FspBI CTAG 3 cut(s) 71, 144, 589
GluI GCNGC 4 cut(s) 290, 309, 402, 579
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 292, 477
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 386
Hin1II CATG 2 cut(s) 297, 464
HindIII AAGCTT 2 cut(s) 19, 431
HinfI GANTC 2 cut(s) 50, 569
HpaII CCGG 1 cut(s) 503
Hpy166II GTNNAC 5 cut(s) 6, 204, 212, 239, 568
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 5 cut(s) 6, 204, 212, 239, 568
Hpy99I CGWCG 3 cut(s) 80, 256, 523
HpyAV CCTTC 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 377, 386, 499, 584
HpyF3I CTNAG 2 cut(s) 429, 546
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 297, 464
KflI GGGWCCC 1 cut(s) 322
KpnI GGTACC 1 cut(s) 360
Kzo9I GATC 2 cut(s) 177, 533
LmnI GCTCC 4 cut(s) 187, 232, 425, 505
LpnPI CCDG 6 cut(s) 22, 110, 200, 355, 366, 516
Lsp1109I GCAGC 1 cut(s) 388
MaeI CTAG 3 cut(s) 71, 144, 589
MaeII ACGT 1 cut(s) 206
MalI GATC 2 cut(s) 179, 535
MbiI CCGCTC 1 cut(s) 125
MboI GATC 2 cut(s) 177, 533
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 3 cut(s) 86, 150, 268
MlyI GAGTC 1 cut(s) 563
MseI TTAA 1 cut(s) 435
MspI CCGG 1 cut(s) 503
MvnI CGCG 2 cut(s) 308, 581
MwoI GCNNNNNNNGC 5 cut(s) 110, 377, 386, 499, 584
NcoI CCATGG 1 cut(s) 293
NdeII GATC 2 cut(s) 177, 533
NlaIII CATG 2 cut(s) 297, 464
NlaIV GGNNCC 6 cut(s) 189, 323, 324, 340, 358, 421
PcsI WCGNNNNNNNCGW 1 cut(s) 578
PfeI GAWTC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 4 cut(s) 291, 310, 403, 580
PleI GAGTC 1 cut(s) 563
PmaCI CACGTG 1 cut(s) 207
PmlI CACGTG 1 cut(s) 207
PpsI GAGTC 1 cut(s) 563
Ppu21I YACGTR 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 322
Psp5II RGGWCCY 1 cut(s) 322
PspCI CACGTG 1 cut(s) 207
PspN4I GGNNCC 6 cut(s) 189, 323, 324, 340, 358, 421
PspPI GGNCC 3 cut(s) 322, 339, 475
PspPPI RGGWCCY 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 133, 305, 358
RsaNI GTAC 3 cut(s) 132, 304, 357
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 4 cut(s) 290, 309, 402, 579
Sau3AI GATC 2 cut(s) 177, 533
Sau96I GGNCC 3 cut(s) 322, 339, 475
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 563
SduI GDGCHC 1 cut(s) 43
SetI ASST 9 cut(s) 23, 209, 222, 228, 362, 403, 430, 435, 510
SinI GGWCC 2 cut(s) 322, 339
Sse9I AATT 3 cut(s) 86, 150, 268
SsiI CCGC 8 cut(s) 58, 123, 230, 289, 308, 311, 371, 579
SspMI CTAG 3 cut(s) 71, 144, 589
StyI CCWWGG 1 cut(s) 293
TaiI ACGT 1 cut(s) 209
TaqI TCGA 4 cut(s) 32, 161, 254, 572
TaqII GACCGA 1 cut(s) 411
TasI AATT 3 cut(s) 86, 150, 268
TatI WGTACW 1 cut(s) 131
TauI GCSGC 3 cut(s) 292, 311, 581
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseI GCWGC 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 507
Van91I CCANNNNNTGG 1 cut(s) 348
VpaK11BI GGWCC 2 cut(s) 322, 339
XagI CCTNNNNNAGG 1 cut(s) 364
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 3 cut(s) 71, 144, 589
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.