Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025693.1

Orthogroup ID

OG0004245

Physical Location & Seq

Genomic Coordinates Reverse (-)

10943 .. 11662

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025693.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgtccacagaaacaagcttctcaaactcagactgggctctcttggaatcgatccgccagcatcttctcgaagacgatttcgatgcccagtcggcattttccactgactctccagctcaaaatacttccagctccaactgcactgagatatcgaacagtgatgcggagatagtggagcagaaccaagcattcactagtgaatttgaggcggaggtggcggcgcgtgaacaccacacaccatcgggtcagaggcattttagaggagtgcggaggcggccgtggggaaagtacgcggcggagataagggacccgaaaaagaacgggacgagagtgtggctcgggacctacgagaaggcggaggacgcaggattggcttacgaccgagccgctttcaaaatgcgtggctccaaagctaagcttaactttccgcacttgattggcatgcataatgtggaggtgggccgtgtgcttcccaagcgtgcctcgccggagccgtcatctccgtcctccactacgtcgtctgaagatggctcgccgaagccaaagaggaggaggggtggagtgggctcggctgcggcggaagcccagttggaggaagctgctcaagagtttcatgtgttccaagtggactcattcacattttgcaacgaactattggttgaggatatggcgctcttgtcaccatctgaatgctcagacattctttcttttttggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

239

Amino Acids

26.42

Weight (kDa)

5.18

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10070 FvH4_7g10080
malus_domestica	MD07G1106200.v1.1 MD07G1106300.v1.1
prunus_persica	Prupe.2G129600_v2.0.a1
pyrus_communis	pycom07g09090
rosa_chinensis	RchiOBHm_Chr1g0347641 RchiOBHm_Chr1g0347661 RchiOBHm_Chr1g0347671
rosa_laevigata	RLG00000028721 RLG00000028722 RLG00000028724
rosa_multiflora	Rmu_co8415911.1_g000001 Rmu_co8487513.1_g000001 Rmu_sc0025693.1_g000001 Rmu_sc0025693.1_g000002 Rmu_sc0025693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307530 Rroxscaffold_4G00307540
rosa_rugosa	Rorug01G0188400 Rorug01G0188600
rosa_samantha	Rh1AG206200 Rh1AG206300 Rh1AG206400 Rh1BG171500 Rh1BG171700 Rh1BG171800 Rh1DG201500 Rh1DG201600 Rh1DG201700
rosa_wichuraiana	Rw1G017250 Rw1G017260 Rw1G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	223, 293
AclWI	GGATC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	592
AgsI	TTSAA	1 cut(s)	394
AhlI	ACTAGT	1 cut(s)	194
AluBI	AGCT	6 cut(s)	18, 116, 132, 413, 418, 599
AluI	AGCT	6 cut(s)	18, 116, 132, 413, 418, 599
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	275, 460
ApeKI	GCWGC	2 cut(s)	572, 599
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	223, 673
AspS9I	GGNCC	3 cut(s)	307, 342, 460
AsuHPI	GGTGA	1 cut(s)	672
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	307, 342
BanII	GRGCYC	2 cut(s)	40, 569
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	559, 586
BccI	CCATC	3 cut(s)	247, 521, 691
BceAI	ACGGC	3 cut(s)	262, 447, 478
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcuI	ACTAGT	1 cut(s)	194
BfaI	CTAG	1 cut(s)	195
BfoI	RGCGCY	1 cut(s)	674
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	7 cut(s)	219, 275, 294, 387, 573, 576, 600
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	7 cut(s)	220, 276, 295, 388, 574, 577, 601
Bme18I	GGWCC	2 cut(s)	307, 342
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	3 cut(s)	307, 342, 460
BmiI	GGNNCC	5 cut(s)	308, 309, 343, 406, 492
BmrI	ACTGGG	3 cut(s)	43, 82, 580
BmsI	GCATC	3 cut(s)	70, 73, 151
BmuI	ACTGGG	3 cut(s)	43, 82, 580
BpiI	GAAGAC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	321, 353
BpmI	CTGGAG	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	588
Bsa29I	ATCGAT	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	278
BsaXI	ACNNNNNCTCC	4 cut(s)	94, 124, 541, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	592
Bse1I	ACTGG	3 cut(s)	38, 88, 586
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	42, 135, 708
BseNI	ACTGG	3 cut(s)	38, 88, 586
BseRI	GAGGAG	3 cut(s)	276, 562, 565
BseX3I	CGGCCG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	559, 586
BsgI	GTGCAG	1 cut(s)	124
Bsh1236I	CGCG	2 cut(s)	223, 293
Bsh1285I	CGRYCG	2 cut(s)	278, 382
BshFI	GGCC	2 cut(s)	277, 462
BshVI	ATCGAT	1 cut(s)	50
BsiEI	CGRYCG	2 cut(s)	278, 382
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	3 cut(s)	320, 337, 355
BslI	CCNNNNNNNGG	1 cut(s)	592
BsmFI	GGGAC	3 cut(s)	320, 337, 355
BsmI	GAATGC	2 cut(s)	188, 695
BsnI	GGCC	2 cut(s)	277, 462
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	40, 569
Bsp143I	GATC	1 cut(s)	51
Bsp1720I	GCTNAGC	1 cut(s)	414
BspANI	GGCC	2 cut(s)	277, 462
BspCNI	CTCAG	3 cut(s)	41, 136, 707
BspDI	ATCGAT	1 cut(s)	50
BspFNI	CGCG	2 cut(s)	223, 293
BspLI	GGNNCC	5 cut(s)	308, 309, 343, 406, 492
BspPI	GGATC	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	38, 88, 586
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	4 cut(s)	59, 443, 480, 533
BstDEI	CTNAG	4 cut(s)	28, 144, 414, 694
BstDSI	CCRYGG	1 cut(s)	278
BstFNI	CGCG	2 cut(s)	223, 293
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	2 cut(s)	223, 673
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	2 cut(s)	278, 382
BstMWI	GCNNNNNNNGC	9 cut(s)	92, 138, 215, 274, 362, 371, 475, 484, 581
BstNSI	RCATGY	1 cut(s)	445
BstUI	CGCG	2 cut(s)	223, 293
BstV1I	GCAGC	2 cut(s)	559, 586
BstV2I	GAAGAC	1 cut(s)	78
BstZI	CGGCCG	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	277, 462
BsuTUI	ATCGAT	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	278
BtsIMutI	CAGTG	3 cut(s)	102, 141, 163
Cac8I	GCNNGC	4 cut(s)	59, 443, 480, 533
CfoI	GCGC	2 cut(s)	223, 673
Cfr13I	GGNCC	3 cut(s)	307, 342, 460
ClaI	ATCGAT	1 cut(s)	50
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	289
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	2 cut(s)	442, 614
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	4 cut(s)	28, 144, 414, 694
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	275
EagI	CGGCCG	1 cut(s)	275
EciI	GGCGGA	5 cut(s)	44, 224, 311, 371, 593
EclXI	CGGCCG	1 cut(s)	275
Eco24I	GRGCYC	2 cut(s)	40, 569
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	307, 342
Eco52I	CGGCCG	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	307, 342
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	40, 569
FaeI	CATG	2 cut(s)	445, 617
FaiI	YATR	4 cut(s)	443, 447, 615, 668
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 407, 439
FaqI	GGGAC	3 cut(s)	320, 337, 355
FatI	CATG	2 cut(s)	441, 613
Fnu4HI	GCNGC	7 cut(s)	219, 275, 294, 387, 573, 576, 600
FriOI	GRGCYC	2 cut(s)	40, 569
Fsp4HI	GCNGC	7 cut(s)	219, 275, 294, 387, 573, 576, 600
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	2 cut(s)	222, 672
GluI	GCNGC	7 cut(s)	219, 275, 294, 387, 573, 576, 600
GsuI	CTGGAG	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	2 cut(s)	277, 462
HapII	CCGG	1 cut(s)	488
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	2 cut(s)	223, 673
Hin1II	CATG	2 cut(s)	445, 617
Hin6I	GCGC	2 cut(s)	221, 671
HinP1I	GCGC	2 cut(s)	221, 671
HindIII	AAGCTT	2 cut(s)	16, 416
HinfI	GANTC	3 cut(s)	47, 107, 629
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	3 cut(s)	6, 227, 628
Hpy188I	TCNGA	5 cut(s)	31, 249, 523, 688, 697
Hpy188III	TCNNGA	3 cut(s)	68, 340, 605
Hpy8I	GTNNAC	3 cut(s)	6, 227, 628
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	515
HpyCH4V	TGCA	3 cut(s)	141, 445, 645
HpyF10VI	GCNNNNNNNGC	9 cut(s)	92, 138, 215, 274, 362, 371, 475, 484, 581
HpyF3I	CTNAG	4 cut(s)	28, 144, 414, 694
HpySE526I	ACGT	1 cut(s)	515
Hsp92II	CATG	2 cut(s)	445, 617
HspAI	GCGC	2 cut(s)	221, 671
KflI	GGGWCCC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	4 cut(s)	137, 175, 410, 490
LpnPI	CCDG	8 cut(s)	19, 71, 101, 126, 142, 351, 501, 599
Lsp1109I	GCAGC	2 cut(s)	559, 586
LweI	GCATC	3 cut(s)	70, 73, 151
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	678
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	3 cut(s)	56, 83, 536
MhlI	GDGCHC	2 cut(s)	40, 569
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	101, 623
MmeI	TCCRAC	2 cut(s)	159, 570
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	688
MspI	CCGG	1 cut(s)	488
Mva1269I	GAATGC	2 cut(s)	188, 695
MvnI	CGCG	2 cut(s)	223, 293
MwoI	GCNNNNNNNGC	9 cut(s)	92, 138, 215, 274, 362, 371, 475, 484, 581
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	445, 617
NlaIV	GGNNCC	5 cut(s)	308, 309, 343, 406, 492
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	678
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	1 cut(s)	445
PaeI	GCATGC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 491
PctI	GAATGC	2 cut(s)	188, 695
PfeI	GAWTC	1 cut(s)	47
PkrI	GCNGC	7 cut(s)	220, 276, 295, 388, 574, 577, 601
PleI	GAGTC	2 cut(s)	101, 623
PpsI	GAGTC	2 cut(s)	101, 623
PpuMI	RGGWCCY	2 cut(s)	307, 342
Psp5II	RGGWCCY	2 cut(s)	307, 342
PspN4I	GGNNCC	5 cut(s)	308, 309, 343, 406, 492
PspPI	GGNCC	3 cut(s)	307, 342, 460
PspPPI	RGGWCCY	2 cut(s)	307, 342
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	688
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	7 cut(s)	219, 275, 294, 387, 573, 576, 600
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	3 cut(s)	307, 342, 460
SchI	GAGTC	2 cut(s)	101, 623
SduI	GDGCHC	2 cut(s)	40, 569
SfaNI	GCATC	3 cut(s)	70, 73, 151
SinI	GGWCC	2 cut(s)	307, 342
SmiMI	CAYNNNNRTG	1 cut(s)	688
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SpeI	ACTAGT	1 cut(s)	194
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	1 cut(s)	200
SspMI	CTAG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	518
TaqI	TCGA	4 cut(s)	50, 69, 81, 152
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	200
TauI	GCSGC	5 cut(s)	221, 277, 296, 389, 578
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	109, 148, 163
TseFI	GTSAC	1 cut(s)	678
TseI	GCWGC	2 cut(s)	572, 599
Tsp45I	GTSAC	1 cut(s)	678
TspDTI	ATGAA	1 cut(s)	602
TspGWI	ACGGA	1 cut(s)	492
TspRI	CASTG	3 cut(s)	109, 148, 163
VpaK11BI	GGWCC	2 cut(s)	307, 342
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	445
XspI	CTAG	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.