Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004245

Physical Location & Seq

Genomic Coordinates Forward (+)

18669211 .. 18670281

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCAACGGAAAGCATTACGAGTTCCAACTGGGCTCTCTTGGAGTCAATCCGTCAGCATCTGCTAGACGACGATTTTGAAAACCAGGCAACGTTTTTGGTCAGTGCCGCTGAAGATGATGCACCGTTGTATGATTGTGCTCCAAGTACTTCAAGCTCTAGCCATGCTCACTTTGGTGTAGAGGGCTGGGGTGACACAATTGCAATCTTGGACCATGATTTGGATGTCAAGGTGGAGGCGCGTGTAAACCACGCGCCGCCAAGTGGCCGACATTTTCGGGGAGTGAGGAGGCGACCGTGGGGGAAGTACGCGGCGGAGATTAGGGACCCAAAGAAGAACGGGGCGAGAGTGTGGCTCGGGACCTATGAGACTGCTGAGGATGCCGGCTTGGCTTATGACCGAGCTGCTTTTAAAATGCGTGGCTCCAAGGCTAAGCTTAATTTTCCTCACCTTATTGGCTCACATGATTCGGAGCCCGGTCGTGTGGCTCCCAAGCGTGGCTCGCCGGAGCCATCCTTTTCGTCAGCCACATCGTCTGATGATGGCGGATGCCCGACGCTTAAGAGGAGAAAGAGTGGAGTTGACTCGGCGGCTAAAGCCAAGTTGGAAGAAGCAGCTGAACAGTTTCACGTGTTTCAAGTGGAGTCATTAACACTCGGCGGCCAGCTGTTTGTCGACGAGTTGTACACATATGACGAACTTTTGGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

238

Amino Acids

25.95

Weight (kDa)

5.47

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004245)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g10070 FvH4_7g10080
malus_domestica	MD07G1106200.v1.1 MD07G1106300.v1.1
prunus_persica	Prupe.2G129600_v2.0.a1
pyrus_communis	pycom07g09090
rosa_chinensis	RchiOBHm_Chr1g0347641 RchiOBHm_Chr1g0347661 RchiOBHm_Chr1g0347671
rosa_laevigata	RLG00000028721 RLG00000028722 RLG00000028724
rosa_multiflora	Rmu_co8415911.1_g000001 Rmu_co8487513.1_g000001 Rmu_sc0025693.1_g000001 Rmu_sc0025693.1_g000002 Rmu_sc0025693.1_g000003
rosa_roxburghii	Rroxscaffold_4G00307530 Rroxscaffold_4G00307540
rosa_rugosa	Rorug01G0188400 Rorug01G0188600
rosa_samantha	Rh1AG206200 Rh1AG206300 Rh1AG206400 Rh1BG171500 Rh1BG171700 Rh1BG171800 Rh1DG201500 Rh1DG201600 Rh1DG201700
rosa_wichuraiana	Rw1G017250 Rw1G017260 Rw1G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	3 cut(s)	241, 254, 311
AciI	CCGC	7 cut(s)	108, 257, 311, 314, 546, 590, 660
AclI	AACGTT	1 cut(s)	92
AcoI	YGGCCR	3 cut(s)	265, 661, 705
AcuI	CTGAAG	1 cut(s)	132
AcvI	CACGTG	1 cut(s)	631
AfaI	GTAC	3 cut(s)	148, 308, 686
AfiI	CCNNNNNNNGG	3 cut(s)	220, 263, 497
AflII	CTTAAG	1 cut(s)	560
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	80, 153, 638
AjnI	CCWGG	1 cut(s)	84
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	5 cut(s)	156, 404, 436, 617, 667
AluI	AGCT	5 cut(s)	156, 404, 436, 617, 667
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	362
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	265, 661, 705
ApeKI	GCWGC	2 cut(s)	404, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	59, 91
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	2 cut(s)	241, 256
AspS9I	GGNCC	3 cut(s)	211, 325, 360
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	203, 440
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	3 cut(s)	211, 325, 360
BalI	TGGCCA	1 cut(s)	707
BanII	GRGCYC	2 cut(s)	37, 477
BbrPI	CACGTG	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	391, 626
BccI	CCATC	2 cut(s)	520, 536
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	65, 159
BfrI	CTTAAG	1 cut(s)	560
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	7 cut(s)	108, 257, 312, 405, 591, 615, 661
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	7 cut(s)	109, 258, 313, 406, 592, 616, 662
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	86, 477
Bme18I	GGWCC	3 cut(s)	211, 325, 360
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	3 cut(s)	211, 325, 360
BmiI	GGNNCC	7 cut(s)	326, 327, 361, 424, 474, 489, 510
BmrFI	CCNGG	2 cut(s)	86, 477
BmrI	ACTGGG	1 cut(s)	40
BmsI	GCATC	4 cut(s)	67, 109, 370, 539
BmuI	ACTGGG	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	339, 371
Bpu10I	CCTNAGC	1 cut(s)	375
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	296, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 263, 497
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	296, 426
BseGI	GGATG	4 cut(s)	229, 385, 512, 554
BseLI	CCNNNNNNNGG	3 cut(s)	220, 263, 497
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	301, 580
BseXI	GCAGC	2 cut(s)	391, 626
BseYI	CCCAGC	1 cut(s)	186
Bsh1236I	CGCG	3 cut(s)	241, 254, 311
Bsh1285I	CGRYCG	2 cut(s)	296, 481
BshFI	GGCC	3 cut(s)	267, 663, 707
BsiEI	CGRYCG	2 cut(s)	296, 481
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	3 cut(s)	384, 477, 506
BslFI	GGGAC	2 cut(s)	338, 373
BslI	CCNNNNNNNGG	3 cut(s)	220, 263, 497
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	338, 373
BsnI	GGCC	3 cut(s)	267, 663, 707
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	3 cut(s)	37, 142, 477
Bsp1407I	TGTACA	1 cut(s)	684
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	7 cut(s)	108, 257, 311, 314, 546, 590, 660
BspANI	GGCC	3 cut(s)	267, 663, 707
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	3 cut(s)	241, 254, 311
BspLI	GGNNCC	7 cut(s)	326, 327, 361, 424, 474, 489, 510
BspTI	CTTAAG	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	2 cut(s)	296, 426
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	3 cut(s)	126, 297, 624
BstAFI	CTTAAG	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	684
BstBAI	YACGTR	1 cut(s)	631
BstC8I	GCNNGC	3 cut(s)	385, 503, 665
BstDEI	CTNAG	2 cut(s)	375, 432
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	4 cut(s)	229, 385, 512, 554
BstFNI	CGCG	3 cut(s)	241, 254, 311
BstHHI	GCGC	2 cut(s)	241, 256
BstMAI	GTCTC	1 cut(s)	362
BstMCI	CGRYCG	2 cut(s)	296, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 389, 502, 596
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	84, 475
BstUI	CGCG	3 cut(s)	241, 254, 311
BstV1I	GCAGC	2 cut(s)	391, 626
BsuRI	GGCC	3 cut(s)	267, 663, 707
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	229, 385, 512, 554
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	385, 503, 665
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	2 cut(s)	241, 256
Cfr10I	RCCGGY	1 cut(s)	383
Cfr13I	GGNCC	3 cut(s)	211, 325, 360
CseI	GACGC	1 cut(s)	565
Csp6I	GTAC	3 cut(s)	147, 307, 685
CviAII	CATG	3 cut(s)	164, 215, 464
CviQI	GTAC	3 cut(s)	147, 307, 685
DdeI	CTNAG	2 cut(s)	375, 432
DraI	TTTAAA	1 cut(s)	412
EaeI	YGGCCR	3 cut(s)	265, 661, 705
EciI	GGCGGA	2 cut(s)	329, 561
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	37, 477
Eco47I	GGWCC	3 cut(s)	211, 325, 360
Eco57I	CTGAAG	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	631
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	325, 360
EcoRII	CCWGG	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	426
EcoT38I	GRGCYC	2 cut(s)	37, 477
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	167, 218, 467
FaiI	YATR	8 cut(s)	132, 165, 216, 366, 396, 465, 691, 693
FaqI	GGGAC	2 cut(s)	338, 373
FatI	CATG	3 cut(s)	163, 214, 463
FauNDI	CATATG	1 cut(s)	691
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	7 cut(s)	108, 257, 312, 405, 591, 615, 661
FokI	GGATG	4 cut(s)	236, 392, 499, 561
FriOI	GRGCYC	2 cut(s)	37, 477
Fsp4HI	GCNGC	7 cut(s)	108, 257, 312, 405, 591, 615, 661
FspBI	CTAG	2 cut(s)	65, 159
GlaI	GCGC	2 cut(s)	240, 255
GluI	GCNGC	7 cut(s)	108, 257, 312, 405, 591, 615, 661
GsaI	CCCAGC	1 cut(s)	190
HaeIII	GGCC	3 cut(s)	267, 663, 707
HapII	CCGG	3 cut(s)	384, 477, 506
HgaI	GACGC	1 cut(s)	565
HhaI	GCGC	2 cut(s)	241, 256
Hin1II	CATG	3 cut(s)	167, 218, 467
Hin6I	GCGC	2 cut(s)	239, 254
HinP1I	GCGC	2 cut(s)	239, 254
HincII	GTYRAC	3 cut(s)	6, 583, 676
HindII	GTYRAC	3 cut(s)	6, 583, 676
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	44, 467, 584, 644
HpaII	CCGG	3 cut(s)	384, 477, 506
HphI	GGTGA	2 cut(s)	203, 440
Hpy166II	GTNNAC	5 cut(s)	6, 247, 583, 676, 687
Hpy188I	TCNGA	3 cut(s)	472, 538, 713
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	5 cut(s)	6, 247, 583, 676, 687
Hpy99I	CGWCG	3 cut(s)	74, 559, 680
HpyCH4III	ACNGT	3 cut(s)	126, 297, 624
HpyCH4IV	ACGT	2 cut(s)	92, 630
HpyCH4V	TGCA	2 cut(s)	122, 203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 389, 502, 596
HpyF3I	CTNAG	2 cut(s)	375, 432
HpySE526I	ACGT	2 cut(s)	92, 630
Hsp92II	CATG	3 cut(s)	167, 218, 467
HspAI	GCGC	2 cut(s)	239, 254
KflI	GGGWCCC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	383
KroNI	GCCGGC	1 cut(s)	385
LmnI	GCTCC	5 cut(s)	145, 428, 472, 493, 508
LpnPI	CCDG	8 cut(s)	16, 71, 98, 172, 397, 490, 519, 677
Lsp1109I	GCAGC	2 cut(s)	391, 626
LweI	GCATC	4 cut(s)	67, 109, 370, 539
MaeI	CTAG	2 cut(s)	65, 159
MaeII	ACGT	2 cut(s)	92, 630
MaeIII	GTNAC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	125, 346, 620
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	3 cut(s)	37, 142, 477
MlsI	TGGCCA	1 cut(s)	707
MluCI	AATT	2 cut(s)	198, 439
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	3 cut(s)	53, 578, 653
MmeI	TCCRAC	2 cut(s)	51, 585
MnlI	CCTC	7 cut(s)	175, 229, 279, 282, 370, 456, 558
Mox20I	TGGCCA	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	383
MroXI	GAANNNNTTC	1 cut(s)	624
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	4 cut(s)	411, 438, 561, 650
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	707
MspA1I	CMGCKG	3 cut(s)	110, 617, 667
MspCI	CTTAAG	1 cut(s)	560
MspI	CCGG	3 cut(s)	384, 477, 506
MspR9I	CCNGG	2 cut(s)	86, 477
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	3 cut(s)	241, 254, 311
MwoI	GCNNNNNNNGC	4 cut(s)	380, 389, 502, 596
NaeI	GCCGGC	1 cut(s)	385
NciI	CCSGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	691
NgoMIV	GCCGGC	1 cut(s)	383
NlaIII	CATG	3 cut(s)	167, 218, 467
NlaIV	GGNNCC	7 cut(s)	326, 327, 361, 424, 474, 489, 510
NmeAIII	GCCGAG	2 cut(s)	566, 636
NmuCI	GTSAC	1 cut(s)	191
OliI	CACNNNNGTG	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	467
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	7 cut(s)	109, 258, 313, 406, 592, 616, 662
PleI	GAGTC	3 cut(s)	52, 578, 652
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	3 cut(s)	52, 578, 652
Ppu21I	YACGTR	1 cut(s)	631
PpuMI	RGGWCCY	2 cut(s)	325, 360
Psp1406I	AACGTT	1 cut(s)	92
Psp5II	RGGWCCY	2 cut(s)	325, 360
Psp6I	CCWGG	1 cut(s)	84
PspCI	CACGTG	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	7 cut(s)	326, 327, 361, 424, 474, 489, 510
PspPI	GGNCC	3 cut(s)	211, 325, 360
PspPPI	RGGWCCY	2 cut(s)	325, 360
PstNI	CAGNNNCTG	1 cut(s)	61
PvuII	CAGCTG	2 cut(s)	617, 667
RsaI	GTAC	3 cut(s)	148, 308, 686
RsaNI	GTAC	3 cut(s)	147, 307, 685
RseI	CAYNNNNRTG	1 cut(s)	174
SalI	GTCGAC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	411, 438, 561, 650
SatI	GCNGC	7 cut(s)	108, 257, 312, 405, 591, 615, 661
Sau96I	GGNCC	3 cut(s)	211, 325, 360
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	3 cut(s)	53, 578, 653
ScrFI	CCNGG	2 cut(s)	86, 477
SduI	GDGCHC	3 cut(s)	37, 142, 477
SfaNI	GCATC	4 cut(s)	67, 109, 370, 539
SinI	GGWCC	3 cut(s)	211, 325, 360
SmiMI	CAYNNNNRTG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	2 cut(s)	198, 439
SsiI	CCGC	7 cut(s)	108, 257, 311, 314, 546, 590, 660
SspMI	CTAG	2 cut(s)	65, 159
StyD4I	CCNGG	2 cut(s)	84, 475
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	3 cut(s)	126, 297, 624
TaiI	ACGT	2 cut(s)	95, 633
TaqI	TCGA	1 cut(s)	675
TaqII	GACCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	198, 439
TatI	WGTACW	2 cut(s)	146, 684
TauI	GCSGC	5 cut(s)	110, 259, 314, 593, 663
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	4 cut(s)	411, 438, 561, 650
Tru9I	TTAA	4 cut(s)	411, 438, 561, 650
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	404, 614
Tsp45I	GTSAC	1 cut(s)	191
TspGWI	ACGGA	2 cut(s)	23, 41
TspRI	CASTG	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	560
VpaK11BI	GGWCC	3 cut(s)	211, 325, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	65, 159
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.