Rorug01G0188600

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004245
Physical Location & Seq
Reverse (-)
26061677 .. 26063120
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0188600.1

Sequence Viewer

Length: 795 bp
ATGGAGAGTGGAAGTGATATGAATCATCTGCAATATAATTGTGTTAGATTTGATAGATTGTCTGCGAATGATGTTCTAGGCAAGGAGTTTAAATCTGTTGAGGAAGCAGAGATCTTTTATTTTGCTTACGCCAAGGCAATGGGGTTTGATGTTAGAAAGGATGACAAGTATGTAAGTGCAAGGATGGGGAGAGTCACAATCCGTCAATTGGTTTGTTCTGCACAAGGGAAGAGACGGGAGGAATATATGAACAACAGTAACAAGATGTGGGCATTCAACGCAATTTTTGAAGCAGAAATTAATGTATCTTTCACTAAGAAATGGTCCTTCTGTTCATTCAGAGTACGTCATCCATATCATGTTCCCAAACAACATAATAGCTTTGACTGTGGCATTTACATGATCAAATTCATGTTGGATTATGAGAATGCATATCAAATTGGGGATGAGTTTGATTCTGTAAATGAGCGCGTGCAACTAGCCCTTAGGTTGTTGAAGCACCCAAACAACCTAGCACTCAGCGAAATTGAGAAAGGTATGCAGTCTGAAGAGTCTTCGACTAAAGTTATGCAACCTGAAGAGTCTGAAGAGTCTAGGGGTACAAGTGTCAACAGGAACACCAAGACACTACAACAACTTGATGAAACTCTGCAAAACCATGCTAATGGGAACAATGACAAGAGAAAAGTCATCAAGAAGGAAAGCAAATTGCAAAAAGAACTACCATTTCAACCTGCAAAACGGGGTCGAGGCCGCCCTCTTGGCTCAAAGAATAAATCGAAAAAAGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

264

Amino Acids

30.65

Weight (kDa)

9.32

Isoelectric Point (pI)

52.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 39 - 87 9.2e-08 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 742
AccII CGCG 1 cut(s) 471
AciI CCGC 1 cut(s) 754
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 3 cut(s) 567, 597, 606
AfaI GTAC 2 cut(s) 345, 601
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 277, 290, 496, 731
AluBI AGCT 1 cut(s) 381
AluI AGCT 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 1 cut(s) 751
ApoI RAATTY 1 cut(s) 407
AseI ATTAAT 1 cut(s) 300
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 324
AvaII GGWCC 1 cut(s) 324
AxyI CCTNAGG 1 cut(s) 485
BaeI ACNNNNGTAYC 2 cut(s) 591, 624
BbsI GAAGAC 1 cut(s) 546
BccI CCATC 1 cut(s) 178
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 4 cut(s) 77, 479, 512, 594
BfuAI ACCTGC 1 cut(s) 742
BglI GCCNNNNNGGC 1 cut(s) 762
BglII AGATCT 1 cut(s) 111
BisI GCNGC 1 cut(s) 754
BlsI GCNGC 1 cut(s) 755
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 546
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse21I CCTNAGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 4 cut(s) 166, 189, 349, 451
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 532
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 753
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsmI GAATGC 2 cut(s) 272, 433
BsnI GGCC 1 cut(s) 753
Bsp143I GATC 2 cut(s) 111, 402
BspACI CCGC 1 cut(s) 754
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 1 cut(s) 531
BspFNI CGCG 1 cut(s) 471
BspMI ACCTGC 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 111, 402
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 257, 389
Bst6I CTCTTC 4 cut(s) 224, 543, 573, 582
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 3 cut(s) 315, 485, 518
BstF5I GGATG 4 cut(s) 166, 189, 349, 451
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 114, 405
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 2 cut(s) 111, 402
BstMWI GCNNNNNNNGC 2 cut(s) 278, 762
BstUI CGCG 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 111
BstXI CCANNNNNNTGG 2 cut(s) 139, 665
BstYI RGATCY 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 485
BsuRI GGCC 1 cut(s) 753
BtsCI GGATG 4 cut(s) 166, 189, 349, 451
BveI ACCTGC 1 cut(s) 742
Cac8I GCNNGC 1 cut(s) 473
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 344, 600
CviAII CATG 4 cut(s) 359, 400, 412, 659
CviJI RGCY 4 cut(s) 381, 482, 753, 765
CviKI_1 RGCY 4 cut(s) 381, 482, 753, 765
CviQI GTAC 2 cut(s) 344, 600
DdeI CTNAG 3 cut(s) 315, 485, 518
DpnI GATC 2 cut(s) 113, 404
DpnII GATC 2 cut(s) 111, 402
DraI TTTAAA 1 cut(s) 91
Eam1104I CTCTTC 4 cut(s) 224, 543, 573, 582
EarI CTCTTC 4 cut(s) 224, 543, 573, 582
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 567, 597, 606
Eco81I CCTNAGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 132
EcoT22I ATGCAT 1 cut(s) 433
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 4 cut(s) 362, 403, 415, 662
FatI CATG 4 cut(s) 358, 399, 411, 658
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 754
FokI GGATG 4 cut(s) 173, 196, 336, 458
Fsp4HI GCNGC 1 cut(s) 754
FspBI CTAG 4 cut(s) 77, 479, 512, 594
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 754
HaeIII GGCC 1 cut(s) 753
HhaI GCGC 1 cut(s) 471
Hin1II CATG 4 cut(s) 362, 403, 415, 662
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 6 cut(s) 22, 192, 455, 551, 581, 590
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 3 cut(s) 341, 547, 586
Hpy188III TCNNGA 1 cut(s) 694
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 2 cut(s) 337, 691
HpyCH4III ACNGT 2 cut(s) 257, 389
HpyCH4IV ACGT 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 762
HpyF3I CTNAG 3 cut(s) 315, 485, 518
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 4 cut(s) 362, 403, 415, 662
HspAI GCGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 111, 402
LpnPI CCDG 3 cut(s) 588, 598, 747
MaeI CTAG 4 cut(s) 77, 479, 512, 594
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 2 cut(s) 193, 257
MalI GATC 2 cut(s) 113, 404
MboI GATC 2 cut(s) 111, 402
MboII GAAGA 5 cut(s) 241, 546, 560, 590, 599
MfeI CAATTG 1 cut(s) 206
MflI RGATCY 1 cut(s) 111
MluCI AATT 8 cut(s) 37, 206, 282, 297, 407, 438, 525, 707
MlyI GAGTC 4 cut(s) 201, 560, 590, 599
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 4 cut(s) 94, 232, 743, 768
Mph1103I ATGCAT 1 cut(s) 433
MseI TTAA 2 cut(s) 90, 300
MslI CAYNNNNRTG 2 cut(s) 398, 663
MunI CAATTG 1 cut(s) 206
Mva1269I GAATGC 2 cut(s) 272, 433
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 2 cut(s) 278, 762
NdeII GATC 2 cut(s) 111, 402
NlaIII CATG 4 cut(s) 362, 403, 415, 662
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 433
PctI GAATGC 2 cut(s) 272, 433
PfeI GAWTC 2 cut(s) 22, 455
PkrI GCNGC 1 cut(s) 755
PleI GAGTC 4 cut(s) 200, 559, 589, 598
PpsI GAGTC 4 cut(s) 200, 559, 589, 598
PshBI ATTAAT 1 cut(s) 300
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 111
RsaI GTAC 2 cut(s) 345, 601
RsaNI GTAC 2 cut(s) 344, 600
RseI CAYNNNNRTG 2 cut(s) 398, 663
SaqAI TTAA 2 cut(s) 90, 300
SatI GCNGC 1 cut(s) 754
Sau3AI GATC 2 cut(s) 111, 402
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 4 cut(s) 201, 560, 590, 599
SetI ASST 7 cut(s) 349, 383, 491, 513, 538, 577, 736
SinI GGWCC 1 cut(s) 324
SmiMI CAYNNNNRTG 2 cut(s) 398, 663
Sse9I AATT 8 cut(s) 37, 206, 282, 297, 407, 438, 525, 707
SsiI CCGC 1 cut(s) 754
SspMI CTAG 4 cut(s) 77, 479, 512, 594
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 257, 389
TaiI ACGT 1 cut(s) 349
TaqI TCGA 3 cut(s) 557, 748, 779
TasI AATT 8 cut(s) 37, 206, 282, 297, 407, 438, 525, 707
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 2 cut(s) 22, 455
Tru1I TTAA 2 cut(s) 90, 300
Tru9I TTAA 2 cut(s) 90, 300
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 5 cut(s) 35, 263, 324, 400, 657
TspGWI ACGGA 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 324
VspI ATTAAT 1 cut(s) 300
XapI RAATTY 1 cut(s) 407
XspI CTAG 4 cut(s) 77, 479, 512, 594
Zsp2I ATGCAT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.