RchiOBHm_Chr1g0347671

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004245
Physical Location & Seq
Forward (+)
40384247 .. 40385066
820 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57377

Sequence Viewer

Length: 615 bp
ATGTCCACAGAAACTGAAAGCTTCTCAAACTCGAACTGGGCTCTCTTGGAATCCATCCGCCAACATCTTCTAGACGACGATTTTGAATTTGATACCCAGTCGGCATTTTTTGCAAACTCTCCTGCTCAAAGTACTTCAAGCTCTAGCAGAATTGAAATATCGAGCAACGACTTGGAGATCGTGGAGGAGCCGAACCAAGTGTTCACGTGTAAACTGGAGGTGGAGGTGGCGGTGGCGGAGCGTGAACACAACACGCCGTCGAGGGAGAGGCATAATTTTAGGGGCGTGAGGAGGCGGCCATGGGGAAAGTACTCGGCGGAGATAAGGGACCCGAAAAAGAACGGGACCAGAGTGTGGCTCGGTACCTATGAGAGGGCGGAGGACGCAGGCTTGGCTTACGACCGAGCTGCTTTCAAAATGCGTGGCTCCAAAGCTAAGCTTAACTTTCCTCACTTGATTGGCACGCATGATATGGAAGTGGGCCGTGTCCTTCCCAAGCGTGCGTCGCCGGAGCTGTCATCTCCGTCGTCAGAAGATGGCTCGCCGAAGCCTAAGAGGAGGAGGAGTGGAGTGGACTCGACAGCCGCGAAAGCCAAGTTGGGTGAAGCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

204

Amino Acids

22.84

Weight (kDa)

6.99

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 93 - 143 6e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 354
AccII CGCG 1 cut(s) 587
AciI CCGC 7 cut(s) 58, 230, 236, 295, 317, 377, 585
AcoI YGGCCR 1 cut(s) 296
AcsI RAATTY 1 cut(s) 86
AcvI CACGTG 1 cut(s) 207
AfaI GTAC 3 cut(s) 133, 311, 364
AfiI CCNNNNNNNGG 2 cut(s) 354, 372
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 4 cut(s) 86, 138, 155, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 7 cut(s) 21, 141, 407, 434, 439, 514, 608
AluI AGCT 7 cut(s) 21, 141, 407, 434, 439, 514, 608
AlwNI CAGNNNCTG 1 cut(s) 14
AoxI GGCC 2 cut(s) 296, 481
ApeKI GCWGC 2 cut(s) 407, 608
ApoI RAATTY 1 cut(s) 86
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp718I GGTACC 1 cut(s) 362
AspS9I GGNCC 3 cut(s) 328, 345, 481
AsuHPI GGTGA 1 cut(s) 614
AvaII GGWCC 2 cut(s) 328, 345
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 207
BbvI GCAGC 2 cut(s) 394, 595
BccI CCATC 2 cut(s) 62, 530
BceAI ACGGC 2 cut(s) 241, 468
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BfaI CTAG 2 cut(s) 71, 144
BisI GCNGC 4 cut(s) 296, 408, 585, 609
BlpI GCTNAGC 1 cut(s) 435
BlsI GCNGC 4 cut(s) 297, 409, 586, 610
BmcAI AGTACT 2 cut(s) 133, 311
Bme18I GGWCC 2 cut(s) 328, 345
BmgT120I GGNCC 3 cut(s) 328, 345, 481
BmiI GGNNCC 6 cut(s) 189, 329, 330, 346, 364, 427
BmrI ACTGGG 2 cut(s) 46, 91
BmuI ACTGGG 2 cut(s) 46, 91
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 372
Bse1I ACTGG 3 cut(s) 41, 97, 219
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 354, 372
BseNI ACTGG 3 cut(s) 41, 97, 219
BseRI GAGGAG 5 cut(s) 200, 304, 571, 574, 577
BseXI GCAGC 2 cut(s) 394, 595
Bsh1236I CGCG 1 cut(s) 587
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 2 cut(s) 298, 483
BshNI GGYRCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 403
BsiSI CCGG 1 cut(s) 509
BslFI GGGAC 2 cut(s) 341, 358
BslI CCNNNNNNNGG 2 cut(s) 354, 372
BsmFI GGGAC 2 cut(s) 341, 358
BsnI GGCC 2 cut(s) 298, 483
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 177
Bsp1720I GCTNAGC 1 cut(s) 435
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 7 cut(s) 58, 230, 236, 295, 317, 377, 585
BspANI GGCC 2 cut(s) 298, 483
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 6 cut(s) 189, 329, 330, 346, 364, 427
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 3 cut(s) 41, 97, 219
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 388, 464, 501, 542
BstDEI CTNAG 2 cut(s) 435, 552
BstDSI CCRYGG 1 cut(s) 299
BstENI CCTNNNNNAGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 587
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 5 cut(s) 110, 383, 392, 505, 590
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 2 cut(s) 394, 595
BsuRI GGCC 2 cut(s) 298, 483
BtgI CCRYGG 1 cut(s) 299
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 388, 464, 501, 542
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 3 cut(s) 328, 345, 481
CseI GACGC 2 cut(s) 392, 492
Csp6I GTAC 3 cut(s) 132, 310, 363
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 2 cut(s) 300, 467
CviQI GTAC 3 cut(s) 132, 310, 363
DdeI CTNAG 2 cut(s) 435, 552
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 296
EciI GGCGGA 4 cut(s) 47, 251, 332, 392
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 43
Eco47I GGWCC 2 cut(s) 328, 345
Eco72I CACGTG 1 cut(s) 207
EcoNI CCTNNNNNAGG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 2 cut(s) 303, 470
FaiI YATR 5 cut(s) 273, 301, 369, 468, 473
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 428, 460
FaqI GGGAC 2 cut(s) 341, 358
FatI CATG 2 cut(s) 299, 466
Fnu4HI GCNGC 4 cut(s) 296, 408, 585, 609
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 4 cut(s) 296, 408, 585, 609
FspBI CTAG 2 cut(s) 71, 144
GluI GCNGC 4 cut(s) 296, 408, 585, 609
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 298, 483
HapII CCGG 1 cut(s) 509
HgaI GACGC 2 cut(s) 392, 492
Hin1II CATG 2 cut(s) 303, 470
HindIII AAGCTT 2 cut(s) 19, 437
HinfI GANTC 2 cut(s) 50, 575
HpaII CCGG 1 cut(s) 509
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 5 cut(s) 6, 204, 212, 245, 574
Hpy188I TCNGA 1 cut(s) 532
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 5 cut(s) 6, 204, 212, 245, 574
Hpy99I CGWCG 4 cut(s) 80, 262, 508, 529
HpyAV CCTTC 1 cut(s) 500
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 383, 392, 505, 590
HpyF3I CTNAG 2 cut(s) 435, 552
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 303, 470
KflI GGGWCCC 1 cut(s) 328
KpnI GGTACC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 4 cut(s) 187, 238, 431, 511
LpnPI CCDG 7 cut(s) 22, 110, 135, 200, 361, 372, 522
Lsp1109I GCAGC 2 cut(s) 394, 595
MaeI CTAG 2 cut(s) 71, 144
MaeII ACGT 1 cut(s) 206
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 59, 545
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 3 cut(s) 86, 150, 274
MlyI GAGTC 1 cut(s) 569
MseI TTAA 2 cut(s) 441, 613
MspI CCGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 5 cut(s) 110, 383, 392, 505, 590
NcoI CCATGG 1 cut(s) 299
NdeII GATC 1 cut(s) 177
NlaIII CATG 2 cut(s) 303, 470
NlaIV GGNNCC 6 cut(s) 189, 329, 330, 346, 364, 427
NmeAIII GCCGAG 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PfeI GAWTC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 4 cut(s) 297, 409, 586, 610
PleI GAGTC 1 cut(s) 569
PmaCI CACGTG 1 cut(s) 207
PmlI CACGTG 1 cut(s) 207
PpsI GAGTC 1 cut(s) 569
Ppu21I YACGTR 1 cut(s) 207
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspCI CACGTG 1 cut(s) 207
PspN4I GGNNCC 6 cut(s) 189, 329, 330, 346, 364, 427
PspPI GGNCC 3 cut(s) 328, 345, 481
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 133, 311, 364
RsaNI GTAC 3 cut(s) 132, 310, 363
SaqAI TTAA 2 cut(s) 441, 613
SatI GCNGC 4 cut(s) 296, 408, 585, 609
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 3 cut(s) 328, 345, 481
ScaI AGTACT 2 cut(s) 133, 311
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 1 cut(s) 43
SinI GGWCC 2 cut(s) 328, 345
Sse9I AATT 3 cut(s) 86, 150, 274
SsiI CCGC 7 cut(s) 58, 230, 236, 295, 317, 377, 585
SspMI CTAG 2 cut(s) 71, 144
StyI CCWWGG 1 cut(s) 299
TaiI ACGT 1 cut(s) 209
TaqI TCGA 4 cut(s) 32, 161, 260, 578
TaqII GACCGA 1 cut(s) 417
TasI AATT 3 cut(s) 86, 150, 274
TatI WGTACW 2 cut(s) 131, 309
TauI GCSGC 2 cut(s) 298, 587
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 441, 613
Tru9I TTAA 2 cut(s) 441, 613
TseI GCWGC 2 cut(s) 407, 608
TspGWI ACGGA 1 cut(s) 513
Van91I CCANNNNNTGG 1 cut(s) 354
VpaK11BI GGWCC 2 cut(s) 328, 345
XagI CCTNNNNNAGG 1 cut(s) 370
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 2 cut(s) 71, 144
ZrmI AGTACT 2 cut(s) 133, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.