Rh1AG206300

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004245
Physical Location & Seq
Forward (+)
39045415 .. 39046389
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG206300.1

Sequence Viewer

Length: 714 bp
ATGTCCACAGAAACAAGCTTCTCAAACTCAGACTGGGCTCTCTTGGAATCGATCCGTCAGCATCTTCTCGAAGACGATTTCGATACCCAGTCGGCATTTTCCACTGACTCTCCAGGCTCCAGCTCCTGGAACTGCACTGAGATATCGAACAGTGATGCGGAGATAGTGGAGCAGAACCAAGCATTCACTAGTGAATTTGAGGCGGAGGTGGCGGCGCGTGAATACCACACACCATCGGGTCAGAGGCATTTTAGAGGAGTGAGGAGGCGGCCGTGGGGAAAGTACGCGGCGGAGATAAGGGACCCGAAAAAGAACGGGACGAGAGTGTGGCTCGGGACCTACGAGAAGGCGGAGGACGCAGGATTGGCTTACGACCGAGCCGCTTTCAAAATGCGTGGCTCCAAAGCTAAGCTTAACTTTCCTCACTTGATTGGCATGCATGATGTGGAGGTGGGCCGTGTGCTTCCCAAGCGTGCCTCGCCGGAGCCGTCATCTCCGTCCTCCACGACGTCGTCTGAAGATGGCTCGCCGAAGCCAAAGAGGAGGAGGGGTGGAGTGGGCTCGGCTGCGGCGGAAGCCCAGTTGGAGGAAGCTGCTCAAGAGTTTCATGTGTTCCAAGTGGACTCATTCACATTTTGCAACGAATTATTGGTTGAGGATATGGCGCTCTTGTCACCATCTGAATGCTCAGACATTCTTTCTTTTTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AP2

Protein Analysis

237

Amino Acids

26.3

Weight (kDa)

5.03

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 83 - 134 1e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 126
AccII CGCG 2 cut(s) 217, 287
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 537
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 126, 586
AgsI TTSAA 1 cut(s) 388
AhlI ACTAGT 1 cut(s) 188
AjnI CCWGG 2 cut(s) 112, 125
AluBI AGCT 5 cut(s) 18, 123, 407, 412, 593
AluI AGCT 5 cut(s) 18, 123, 407, 412, 593
AlwI GGATC 1 cut(s) 46
AlwNI CAGNNNCTG 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 269, 454
ApeKI GCWGC 2 cut(s) 566, 593
ApoI RAATTY 1 cut(s) 194
AspLEI GCGC 2 cut(s) 217, 667
AspS9I GGNCC 3 cut(s) 301, 336, 454
AsuHPI GGTGA 1 cut(s) 666
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 2 cut(s) 301, 336
BanII GRGCYC 2 cut(s) 40, 563
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 553, 580
BccI CCATC 3 cut(s) 241, 515, 685
BceAI ACGGC 3 cut(s) 256, 441, 472
BciT130I CCWGG 2 cut(s) 114, 127
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 668
BisI GCNGC 7 cut(s) 213, 269, 288, 381, 567, 570, 594
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 7 cut(s) 214, 270, 289, 382, 568, 571, 595
Bme1390I CCNGG 2 cut(s) 114, 127
Bme18I GGWCC 2 cut(s) 301, 336
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 3 cut(s) 301, 336, 454
BmiI GGNNCC 6 cut(s) 118, 302, 303, 337, 400, 486
BmrFI CCNGG 2 cut(s) 114, 127
BmrI ACTGGG 3 cut(s) 43, 82, 574
BmsI GCATC 2 cut(s) 70, 145
BmuI ACTGGG 3 cut(s) 43, 82, 574
BpiI GAAGAC 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 2 cut(s) 96, 103
Bpu1102I GCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 582
Bsa29I ATCGAT 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 4 cut(s) 94, 124, 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 586
Bse1I ACTGG 3 cut(s) 38, 88, 580
BseBI CCWGG 2 cut(s) 114, 127
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 126, 586
BseMII CTCAG 3 cut(s) 42, 129, 702
BseNI ACTGG 3 cut(s) 38, 88, 580
BseRI GAGGAG 4 cut(s) 270, 277, 556, 559
BseX3I CGGCCG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 553, 580
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 2 cut(s) 217, 287
Bsh1285I CGRYCG 2 cut(s) 272, 376
BshFI GGCC 2 cut(s) 271, 456
BshVI ATCGAT 1 cut(s) 50
BsiEI CGRYCG 2 cut(s) 272, 376
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 482
BslFI GGGAC 3 cut(s) 314, 331, 349
BslI CCNNNNNNNGG 2 cut(s) 126, 586
BsmFI GGGAC 3 cut(s) 314, 331, 349
BsmI GAATGC 2 cut(s) 182, 689
BsnI GGCC 2 cut(s) 271, 456
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 40, 563
Bsp143I GATC 1 cut(s) 51
Bsp1720I GCTNAGC 1 cut(s) 408
BspANI GGCC 2 cut(s) 271, 456
BspCNI CTCAG 3 cut(s) 41, 130, 701
BspDI ATCGAT 1 cut(s) 50
BspFNI CGCG 2 cut(s) 217, 287
BspLI GGNNCC 6 cut(s) 118, 302, 303, 337, 400, 486
BspPI GGATC 1 cut(s) 46
BsrI ACTGG 3 cut(s) 38, 88, 580
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 509
Bst2UI CCWGG 2 cut(s) 114, 127
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 437, 474, 527
BstDEI CTNAG 4 cut(s) 28, 138, 408, 688
BstDSI CCRYGG 1 cut(s) 272
BstFNI CGCG 2 cut(s) 217, 287
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 2 cut(s) 217, 667
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMCI CGRYCG 2 cut(s) 272, 376
BstMWI GCNNNNNNNGC 6 cut(s) 209, 356, 365, 469, 478, 575
BstNI CCWGG 2 cut(s) 114, 127
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 112, 125
BstUI CGCG 2 cut(s) 217, 287
BstV1I GCAGC 2 cut(s) 553, 580
BstV2I GAAGAC 1 cut(s) 78
BstZI CGGCCG 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 50
BsuRI GGCC 2 cut(s) 271, 456
BsuTUI ATCGAT 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 272
BtsIMutI CAGTG 3 cut(s) 102, 135, 157
Cac8I GCNNGC 3 cut(s) 437, 474, 527
CaiI CAGNNNCTG 1 cut(s) 126
CfoI GCGC 2 cut(s) 217, 667
Cfr13I GGNCC 3 cut(s) 301, 336, 454
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 3 cut(s) 436, 440, 608
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 4 cut(s) 28, 138, 408, 688
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 269
EagI CGGCCG 1 cut(s) 269
EciI GGCGGA 4 cut(s) 218, 305, 365, 587
EclXI CGGCCG 1 cut(s) 269
Eco24I GRGCYC 2 cut(s) 40, 563
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 301, 336
Eco52I CGGCCG 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 332
EcoO109I RGGNCCY 2 cut(s) 301, 336
EcoRII CCWGG 2 cut(s) 112, 125
EcoRV GATATC 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 441
EcoT38I GRGCYC 2 cut(s) 40, 563
FaeI CATG 3 cut(s) 439, 443, 611
FaiI YATR 4 cut(s) 437, 441, 609, 662
FalI AAGNNNNNCTT 4 cut(s) 396, 428, 401, 433
FaqI GGGAC 3 cut(s) 314, 331, 349
FatI CATG 3 cut(s) 435, 439, 607
Fnu4HI GCNGC 7 cut(s) 213, 269, 288, 381, 567, 570, 594
FriOI GRGCYC 2 cut(s) 40, 563
Fsp4HI GCNGC 7 cut(s) 213, 269, 288, 381, 567, 570, 594
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 216, 666
GluI GCNGC 7 cut(s) 213, 269, 288, 381, 567, 570, 594
GsuI CTGGAG 2 cut(s) 96, 103
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 2 cut(s) 271, 456
HapII CCGG 1 cut(s) 482
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 217, 667
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 3 cut(s) 439, 443, 611
Hin6I GCGC 2 cut(s) 215, 665
HinP1I GCGC 2 cut(s) 215, 665
HindIII AAGCTT 2 cut(s) 16, 410
HinfI GANTC 3 cut(s) 47, 107, 623
HpaII CCGG 1 cut(s) 482
HphI GGTGA 1 cut(s) 666
Hpy166II GTNNAC 2 cut(s) 6, 622
Hpy188I TCNGA 5 cut(s) 31, 243, 517, 682, 691
Hpy188III TCNNGA 3 cut(s) 68, 334, 599
Hpy8I GTNNAC 2 cut(s) 6, 622
Hpy99I CGWCG 2 cut(s) 511, 514
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 135, 439, 639
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 356, 365, 469, 478, 575
HpyF3I CTNAG 4 cut(s) 28, 138, 408, 688
HpySE526I ACGT 1 cut(s) 509
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 3 cut(s) 439, 443, 611
HspAI GCGC 2 cut(s) 215, 665
KflI GGGWCCC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 5 cut(s) 122, 128, 169, 404, 484
Lsp1109I GCAGC 2 cut(s) 553, 580
LweI GCATC 2 cut(s) 70, 145
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 672
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 3 cut(s) 56, 83, 530
MhlI GDGCHC 2 cut(s) 40, 563
MluCI AATT 2 cut(s) 194, 644
MlyI GAGTC 2 cut(s) 101, 617
MmeI TCCRAC 1 cut(s) 564
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 1 cut(s) 682
MspI CCGG 1 cut(s) 482
MspR9I CCNGG 2 cut(s) 114, 127
Mva1269I GAATGC 2 cut(s) 182, 689
MvaI CCWGG 2 cut(s) 114, 127
MvnI CGCG 2 cut(s) 217, 287
MwoI GCNNNNNNNGC 6 cut(s) 209, 356, 365, 469, 478, 575
NdeII GATC 1 cut(s) 51
NlaIII CATG 3 cut(s) 439, 443, 611
NlaIV GGNNCC 6 cut(s) 118, 302, 303, 337, 400, 486
NmeAIII GCCGAG 1 cut(s) 542
NmuCI GTSAC 1 cut(s) 672
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 1 cut(s) 439
PaeI GCATGC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 485
PctI GAATGC 2 cut(s) 182, 689
PfeI GAWTC 1 cut(s) 47
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 125
PkrI GCNGC 7 cut(s) 214, 270, 289, 382, 568, 571, 595
PleI GAGTC 2 cut(s) 101, 617
PpsI GAGTC 2 cut(s) 101, 617
PpuMI RGGWCCY 2 cut(s) 301, 336
Psp5II RGGWCCY 2 cut(s) 301, 336
Psp6I CCWGG 2 cut(s) 112, 125
PspGI CCWGG 2 cut(s) 112, 125
PspN4I GGNNCC 6 cut(s) 118, 302, 303, 337, 400, 486
PspPI GGNCC 3 cut(s) 301, 336, 454
PspPPI RGGWCCY 2 cut(s) 301, 336
PstNI CAGNNNCTG 1 cut(s) 126
PsyI GACNNNGTC 1 cut(s) 511
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 682
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 7 cut(s) 213, 269, 288, 381, 567, 570, 594
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 3 cut(s) 301, 336, 454
SchI GAGTC 2 cut(s) 101, 617
ScrFI CCNGG 2 cut(s) 114, 127
SduI GDGCHC 2 cut(s) 40, 563
SetI ASST 9 cut(s) 20, 125, 210, 341, 409, 414, 453, 512, 595
SfaNI GCATC 2 cut(s) 70, 145
SinI GGWCC 2 cut(s) 301, 336
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
SpeI ACTAGT 1 cut(s) 188
SphI GCATGC 1 cut(s) 439
Sse9I AATT 2 cut(s) 194, 644
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 112, 125
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 512
TaqI TCGA 4 cut(s) 50, 69, 81, 146
TaqII GACCGA 1 cut(s) 390
TasI AATT 2 cut(s) 194, 644
TauI GCSGC 5 cut(s) 215, 271, 290, 383, 572
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 3 cut(s) 109, 142, 157
TseFI GTSAC 1 cut(s) 672
TseI GCWGC 2 cut(s) 566, 593
Tsp45I GTSAC 1 cut(s) 672
TspDTI ATGAA 1 cut(s) 596
TspGWI ACGGA 2 cut(s) 44, 486
TspRI CASTG 3 cut(s) 109, 142, 157
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 301, 336
XapI RAATTY 1 cut(s) 194
XceI RCATGY 1 cut(s) 439
XspI CTAG 1 cut(s) 189
ZraI GACGTC 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.