FvH4_7g13160

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000932
Physical Location & Seq
Forward (+)
11850706 .. 11855890
5185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g13160.t3

Sequence Viewer

Length: 702 bp
ATGATGATATCGCAGCCAATGGCAGGATTCGCCTTTGTCTATATGGATGATGAGCGAGATGCTGAGTATGCAATTCGAAAGCTTGACAGGACAGAATTTGGTAGGAAGGGGCGCCGCCTTCGTATTGAGTGGACCAAGCATGAACGTGGGATTAGGAGACCTGACGATTCAAAAAAACCTCCAGCGAACACAAAGCCGTCAAAAACCCTGTTTGTCATCAATTTTGATCCTATCCATACCAGGACAAGGGATCTGGAGAAGCACTTTGATCTATATGGGAAAATAATGAACATAAGGATTAGGAGGAATTTTGCATTTATCCAATATGAATCACAGGAGGATGCTACCAAAGCGTTGGAGGCAACAAATTCAAGCAAGTTCATGGACCGAGTTATTTCGGTGGAGTATGCTGTTCGTGATGATGATGATAGAAGAAATGGCCACAGTCCTGAAAGACGGGGCCGTGATACATCTCCCGAGAGGAGAAGAAGCAATGATCGTGGGCGATCTCCAAGTCCATACCGCAGAGAGAGGGGTAGTCCAGATTATGGCCATGGTTCCCGTCAGAATTCTAGAGCTGAACCAAGAAGAAGTCCCGAATATGATAGAGCTACAAGAAGGAGCCCTGATTATGAGCGAGCTGCAAGCCCAGTCAATGATAGATATGACAGCCGTTCACCCCCAGCAAGGGAACGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 RrnaAD

Protein Analysis

234

Amino Acids

27.57

Weight (kDa)

10.16

Isoelectric Point (pI)

81.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 62 1.2e-14 RNA recognition motif
RRM_1 PF00076 97 - 159 2.8e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 548
AciI CCGC 2 cut(s) 115, 523
AclWI GGATC 2 cut(s) 221, 258
AcoI YGGCCR 2 cut(s) 439, 550
AcsI RAATTY 4 cut(s) 95, 307, 367, 568
AcyI GRCGYC 1 cut(s) 112
AfiI CCNNNNNNNGG 5 cut(s) 23, 246, 548, 687, 688
AgsI TTSAA 2 cut(s) 171, 372
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 4 cut(s) 82, 578, 611, 641
AluI AGCT 4 cut(s) 82, 578, 611, 641
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 221, 258
Ama87I CYCGRG 1 cut(s) 476
AoxI GGCC 3 cut(s) 439, 460, 550
ApeKI GCWGC 2 cut(s) 13, 641
ApoI RAATTY 4 cut(s) 95, 307, 367, 568
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 132, 385, 460
AsuHPI GGTGA 1 cut(s) 669
AsuII TTCGAA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 2 cut(s) 132, 385
BalI TGGCCA 2 cut(s) 441, 552
BanI GGYRCC 1 cut(s) 111
BanII GRGCYC 1 cut(s) 626
BbvI GCAGC 2 cut(s) 25, 628
BceAI ACGGC 3 cut(s) 181, 447, 657
BciT130I CCWGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 115
BisI GCNGC 3 cut(s) 14, 115, 642
BlsI GCNGC 3 cut(s) 15, 116, 643
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 2 cut(s) 132, 385
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 3 cut(s) 132, 385, 460
BmiI GGNNCC 4 cut(s) 113, 461, 559, 623
BmrFI CCNGG 1 cut(s) 241
BmrI ACTGGG 1 cut(s) 644
BmsI GCATC 2 cut(s) 49, 331
BmuI ACTGGG 1 cut(s) 644
BpmI CTGGAG 2 cut(s) 165, 275
Bpu14I TTCGAA 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 246, 548, 687, 688
Bse1I ACTGG 1 cut(s) 650
Bse3DI GCAATG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 553
BseGI GGATG 2 cut(s) 52, 346
BseLI CCNNNNNNNGG 5 cut(s) 23, 246, 548, 687, 688
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 650
BseRI GAGGAG 1 cut(s) 496
BseXI GCAGC 2 cut(s) 25, 628
BseYI CCCAGC 1 cut(s) 682
BshFI GGCC 3 cut(s) 441, 462, 552
BshNI GGYRCC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 476
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 5 cut(s) 23, 246, 548, 687, 688
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 3 cut(s) 441, 462, 552
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 6 cut(s) 226, 250, 268, 496, 506, 695
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 2 cut(s) 115, 523
BspANI GGCC 3 cut(s) 441, 462, 552
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 113, 461, 559, 623
BspPI GGATC 2 cut(s) 221, 258
BspT104I TTCGAA 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 1 cut(s) 650
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 6 cut(s) 226, 250, 268, 496, 506, 695
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 112
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 639, 646
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 553
BstF5I GGATG 2 cut(s) 52, 346
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 6 cut(s) 229, 253, 271, 499, 509, 698
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 6 cut(s) 226, 250, 268, 496, 506, 695
BstMWI GCNNNNNNNGC 4 cut(s) 29, 68, 350, 359
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 25, 628
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 3 cut(s) 441, 462, 552
BtgI CCRYGG 1 cut(s) 553
BtsCI GGATG 2 cut(s) 52, 346
Cac8I GCNNGC 2 cut(s) 639, 646
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 132, 385, 460
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 140, 382, 554
DdeI CTNAG 1 cut(s) 63
DinI GGCGCC 1 cut(s) 113
DpnI GATC 6 cut(s) 228, 252, 270, 498, 508, 697
DpnII GATC 6 cut(s) 226, 250, 268, 496, 506, 695
EaeI YGGCCR 2 cut(s) 439, 550
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 151
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 132, 385
Eco88I CYCGRG 1 cut(s) 476
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 239
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 626
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 3 cut(s) 143, 385, 557
FaqI GGGAC 1 cut(s) 579
FatI CATG 3 cut(s) 139, 381, 553
Fnu4HI GCNGC 3 cut(s) 14, 115, 642
FokI GGATG 2 cut(s) 59, 353
FriOI GRGCYC 1 cut(s) 626
Fsp4HI GCNGC 3 cut(s) 14, 115, 642
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 113
GluI GCNGC 3 cut(s) 14, 115, 642
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 2 cut(s) 165, 275
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 3 cut(s) 441, 462, 552
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 3 cut(s) 143, 385, 557
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 3 cut(s) 27, 167, 329
HphI GGTGA 1 cut(s) 669
Hpy166II GTNNAC 2 cut(s) 132, 677
Hpy188I TCNGA 1 cut(s) 567
Hpy188III TCNNGA 8 cut(s) 254, 416, 449, 476, 542, 573, 596, 699
Hpy8I GTNNAC 2 cut(s) 132, 677
HpyAV CCTTC 3 cut(s) 100, 128, 612
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 71, 314, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 68, 350, 359
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 3 cut(s) 143, 385, 557
HspAI GCGC 1 cut(s) 112
KasI GGCGCC 1 cut(s) 111
Kzo9I GATC 6 cut(s) 226, 250, 268, 496, 506, 695
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 2 cut(s) 25, 628
LweI GCATC 2 cut(s) 49, 331
MaeI CTAG 1 cut(s) 573
MaeII ACGT 1 cut(s) 145
MalI GATC 6 cut(s) 228, 252, 270, 498, 508, 697
MboI GATC 6 cut(s) 226, 250, 268, 496, 506, 695
MboII GAAGA 3 cut(s) 444, 498, 600
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 626
MlsI TGGCCA 2 cut(s) 441, 552
MluCI AATT 6 cut(s) 72, 95, 220, 307, 367, 568
MluNI TGGCCA 2 cut(s) 441, 552
Mly113I GGCGCC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 6 cut(s) 189, 297, 331, 352, 474, 525
Mox20I TGGCCA 2 cut(s) 441, 552
MscI TGGCCA 2 cut(s) 441, 552
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 2 cut(s) 441, 552
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 29, 68, 350, 359
NarI GGCGCC 1 cut(s) 112
NcoI CCATGG 1 cut(s) 553
NdeII GATC 6 cut(s) 226, 250, 268, 496, 506, 695
NlaIII CATG 3 cut(s) 143, 385, 557
NlaIV GGNNCC 4 cut(s) 113, 461, 559, 623
NspV TTCGAA 1 cut(s) 76
PfeI GAWTC 3 cut(s) 27, 167, 329
PflMI CCANNNNNTGG 1 cut(s) 548
PkrI GCNGC 3 cut(s) 15, 116, 643
PluTI GGCGCC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 4 cut(s) 113, 461, 559, 623
PspPI GGNCC 3 cut(s) 132, 385, 460
PsuI RGATCY 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 3 cut(s) 14, 115, 642
Sau3AI GATC 6 cut(s) 226, 250, 268, 496, 506, 695
Sau96I GGNCC 3 cut(s) 132, 385, 460
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 626
SetI ASST 7 cut(s) 84, 148, 163, 181, 580, 613, 643
SfaNI GCATC 2 cut(s) 49, 331
SfoI GGCGCC 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 2 cut(s) 132, 385
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 6 cut(s) 72, 95, 220, 307, 367, 568
SsiI CCGC 2 cut(s) 115, 523
SspDI GGCGCC 1 cut(s) 111
SspMI CTAG 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 1 cut(s) 148
TaqI TCGA 1 cut(s) 76
TaqII GACCGA 1 cut(s) 402
TasI AATT 6 cut(s) 72, 95, 220, 307, 367, 568
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 27, 167, 329
TseI GCWGC 2 cut(s) 13, 641
TspDTI ATGAA 4 cut(s) 156, 302, 342, 370
Van91I CCANNNNNTGG 1 cut(s) 548
VpaK11BI GGWCC 2 cut(s) 132, 385
XapI RAATTY 4 cut(s) 95, 307, 367, 568
XbaI TCTAGA 1 cut(s) 572
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.