Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Forward (+)

64676334 .. 64680206

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATGACGAGAGAGATGCTGACTATGCAATACGGGGACTAGATCGGAGAGAATTTGGTCGAAAAGGGCGCAGGCTTCGTGTTGAATGGTCCAAGGTATCCAGTCATGAGCGTGGTTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTAATACAAGGCCGTCAAAGACCTTGTTTGTTATAAATTTTGATCCATATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAATTTCGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGAGGCTACAAACATGAGCAAGCTGATGGACCGAGTTATATCGGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTATAGCCCTGACAGGAGAAGTCGTGATAGGTCACTAGAGAGAGGCCGTGACAGAAGAAGATCCCCAAGTCCCTACAAAAGAGAGAGGGGAAGCCCTGATTATGGCCGTGGCCCTAGCCCTGGTCCATACCGGAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAGAGAGCAAGCCCTGACTATGCCCGTGGGCGCAGCCCAAGTCCTTATAGGAGGGAGAGATCTGATCGTGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGTTGATCATGGCCGTGATCGCAGCCGCAGCCGCAGTCCTTATGTTGGAAGAGATGGGGCTGTTGCTGAAAATGGCCATGCTCCAAGTCCTAGTCCTCCTCCTTATAAGAGAGCTAGAGTTAGCCCTGAAAATGGTCATGGTCCCAGCAGTAGCCCTTATGAAGGAGAGAGGGCCAACAGCCCCGAAGAAGGTCGTATTCCAAGTCCCAACTCTGTGCCCGATGGCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGCCGTTCACCCCAAGCTGAGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

336

Amino Acids

38.63

Weight (kDa)

10.31

Isoelectric Point (pI)

88.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	59 - 121	3.6e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	185, 807
AciI	CCGC	2 cut(s)	727, 733
AclWI	GGATC	5 cut(s)	188, 230, 259, 272, 462
AcoI	YGGCCR	3 cut(s)	511, 712, 775
AcsI	RAATTY	3 cut(s)	53, 187, 274
AfiI	CCNNNNNNNGG	9 cut(s)	509, 527, 563, 746, 833, 863, 890, 944, 1000
AgsI	TTSAA	4 cut(s)	86, 138, 150, 371
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	3 cut(s)	127, 206, 526
AluBI	AGCT	3 cut(s)	346, 815, 998
AluI	AGCT	3 cut(s)	346, 815, 998
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	5 cut(s)	188, 230, 259, 272, 462
AoxI	GGCC	8 cut(s)	161, 451, 511, 517, 712, 775, 873, 950
ApeKI	GCWGC	3 cut(s)	624, 723, 729
ApoI	RAATTY	3 cut(s)	53, 187, 274
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp700I	GAANNNNTTC	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	72, 624
AspS9I	GGNCC	8 cut(s)	90, 210, 352, 518, 530, 842, 873, 950
AsuHPI	GGTGA	2 cut(s)	709, 981
AvaII	GGWCC	5 cut(s)	90, 210, 352, 530, 842
BaeGI	GKGCMC	2 cut(s)	322, 921
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	264
BbsI	GAAGAC	2 cut(s)	130, 138
BbvCI	CCTCAGC	1 cut(s)	999
BbvI	GCAGC	3 cut(s)	636, 735, 741
BccI	CCATC	4 cut(s)	343, 398, 749, 917
BceAI	ACGGC	5 cut(s)	148, 438, 498, 699, 969
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	129, 208, 528
BciVI	GTATCC	1 cut(s)	109
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	673
BfaI	CTAG	7 cut(s)	41, 120, 315, 443, 522, 792, 816
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	5 cut(s)	625, 724, 727, 730, 733
BlsI	GCNGC	5 cut(s)	626, 725, 728, 731, 734
Bme1390I	CCNGG	3 cut(s)	129, 208, 528
Bme18I	GGWCC	5 cut(s)	90, 210, 352, 530, 842
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	8 cut(s)	90, 210, 352, 518, 530, 842, 873, 950
BmiI	GGNNCC	2 cut(s)	266, 844
BmrFI	CCNGG	3 cut(s)	129, 208, 528
BmsI	GCATC	2 cut(s)	7, 298
BpiI	GAAGAC	2 cut(s)	130, 138
BpmI	CTGGAG	2 cut(s)	344, 655
Bpu10I	CCTNAGC	1 cut(s)	999
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	5 cut(s)	93, 213, 514, 526, 616
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	9 cut(s)	509, 527, 563, 746, 833, 863, 890, 944, 1000
Bse1I	ACTGG	3 cut(s)	102, 327, 672
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	129, 208, 528
BseDI	CCNNGG	5 cut(s)	93, 213, 514, 526, 616
BseGI	GGATG	2 cut(s)	10, 313
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	9 cut(s)	509, 527, 563, 746, 833, 863, 890, 944, 1000
BseMII	CTCAG	1 cut(s)	990
BseNI	ACTGG	3 cut(s)	102, 327, 672
BseRI	GAGGAG	1 cut(s)	789
BseSI	GKGCMC	2 cut(s)	322, 921
BseXI	GCAGC	3 cut(s)	636, 735, 741
BseYI	CCCAGC	1 cut(s)	845
BshFI	GGCC	8 cut(s)	163, 453, 513, 519, 714, 777, 875, 952
BsiSI	CCGG	1 cut(s)	538
BslFI	GGGAC	5 cut(s)	51, 462, 666, 828, 891
BslI	CCNNNNNNNGG	9 cut(s)	509, 527, 563, 746, 833, 863, 890, 944, 1000
BsmAI	GTCTC	1 cut(s)	673
BsmFI	GGGAC	5 cut(s)	51, 462, 666, 828, 891
BsnI	GGCC	8 cut(s)	163, 453, 513, 519, 714, 777, 875, 952
Bso31I	GGTCTC	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	322, 921
Bsp143I	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
BspACI	CCGC	2 cut(s)	727, 733
BspANI	GGCC	8 cut(s)	163, 453, 513, 519, 714, 777, 875, 952
BspCNI	CTCAG	1 cut(s)	991
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	266, 844
BspPI	GGATC	5 cut(s)	188, 230, 259, 272, 462
BspTNI	GGTCTC	1 cut(s)	673
BsrI	ACTGG	3 cut(s)	102, 327, 672
BssECI	CCNNGG	5 cut(s)	93, 213, 514, 526, 616
BssMI	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
BssT1I	CCWWGG	2 cut(s)	93, 213
Bst2UI	CCWGG	3 cut(s)	129, 208, 528
Bst6I	CTCTTC	2 cut(s)	394, 745
BstC8I	GCNNGC	3 cut(s)	74, 344, 601
BstDEI	CTNAG	1 cut(s)	999
BstDSI	CCRYGG	2 cut(s)	514, 616
BstENI	CCTNNNNNAGG	1 cut(s)	861
BstF5I	GGATG	2 cut(s)	10, 313
BstHHI	GCGC	2 cut(s)	72, 624
BstKTI	GATC	9 cut(s)	46, 196, 238, 267, 470, 653, 658, 709, 721
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 317, 326, 720, 729, 732, 933
BstNI	CCWGG	3 cut(s)	129, 208, 528
BstSCI	CCNGG	3 cut(s)	127, 206, 526
BstSFI	CTRYAG	1 cut(s)	409
BstSLI	GKGCMC	2 cut(s)	322, 921
BstV1I	GCAGC	3 cut(s)	636, 735, 741
BstV2I	GAAGAC	2 cut(s)	130, 138
BstX2I	RGATCY	3 cut(s)	264, 467, 650
BstXI	CCANNNNNNTGG	1 cut(s)	220
BstYI	RGATCY	3 cut(s)	264, 467, 650
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	8 cut(s)	163, 453, 513, 519, 714, 777, 875, 952
BtgI	CCRYGG	2 cut(s)	514, 616
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	2 cut(s)	10, 313
BtsIMutI	CAGTG	1 cut(s)	320
Cac8I	GCNNGC	3 cut(s)	74, 344, 601
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	2 cut(s)	72, 624
Cfr13I	GGNCC	8 cut(s)	90, 210, 352, 518, 530, 842, 873, 950
CsiI	ACCWGGT	1 cut(s)	127
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
CviAII	CATG	7 cut(s)	107, 337, 710, 779, 839, 964, 968
DdeI	CTNAG	1 cut(s)	999
DpnI	GATC	9 cut(s)	45, 195, 237, 266, 469, 652, 657, 708, 720
DpnII	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
EaeI	YGGCCR	3 cut(s)	511, 712, 775
Eam1104I	CTCTTC	2 cut(s)	394, 745
EarI	CTCTTC	2 cut(s)	394, 745
Eco130I	CCWWGG	2 cut(s)	93, 213
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	5 cut(s)	90, 210, 352, 530, 842
EcoNI	CCTNNNNNAGG	1 cut(s)	861
EcoRII	CCWGG	3 cut(s)	127, 206, 526
EcoT14I	CCWWGG	2 cut(s)	93, 213
EcoT22I	ATGCAT	1 cut(s)	969
ErhI	CCWWGG	2 cut(s)	93, 213
FaeI	CATG	7 cut(s)	110, 340, 713, 782, 842, 967, 971
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	5 cut(s)	51, 462, 666, 828, 891
FatI	CATG	7 cut(s)	106, 336, 709, 778, 838, 963, 967
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	625, 724, 727, 730, 733
FokI	GGATG	2 cut(s)	17, 320
Fsp4HI	GCNGC	5 cut(s)	625, 724, 727, 730, 733
FspBI	CTAG	7 cut(s)	41, 120, 315, 443, 522, 792, 816
GlaI	GCGC	2 cut(s)	71, 623
GluI	GCNGC	5 cut(s)	625, 724, 727, 730, 733
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	2 cut(s)	344, 655
HaeIII	GGCC	8 cut(s)	163, 453, 513, 519, 714, 777, 875, 952
HapII	CCGG	1 cut(s)	538
HhaI	GCGC	2 cut(s)	72, 624
Hin1II	CATG	7 cut(s)	110, 340, 713, 782, 842, 967, 971
Hin6I	GCGC	2 cut(s)	70, 622
HinP1I	GCGC	2 cut(s)	70, 622
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	538
HphI	GGTGA	2 cut(s)	709, 981
Hpy166II	GTNNAC	1 cut(s)	989
Hpy188I	TCNGA	3 cut(s)	48, 269, 655
Hpy188III	TCNNGA	6 cut(s)	107, 120, 138, 383, 431, 557
Hpy8I	GTNNAC	1 cut(s)	989
HpyAV	CCTTC	5 cut(s)	135, 264, 582, 857, 884
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	3 cut(s)	29, 377, 967
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 317, 326, 720, 729, 732, 933
HpyF3I	CTNAG	1 cut(s)	999
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	7 cut(s)	110, 340, 713, 782, 842, 967, 971
HspAI	GCGC	2 cut(s)	70, 622
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
LmnI	GCTCC	1 cut(s)	787
Lsp1109I	GCAGC	3 cut(s)	636, 735, 741
LweI	GCATC	2 cut(s)	7, 298
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	7 cut(s)	41, 120, 315, 443, 522, 792, 816
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	297, 438, 455
MalI	GATC	9 cut(s)	45, 195, 237, 266, 469, 652, 657, 708, 720
MboI	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
MboII	GAAGA	7 cut(s)	135, 138, 411, 474, 477, 762, 899
MflI	RGATCY	3 cut(s)	264, 467, 650
MhlI	GDGCHC	2 cut(s)	322, 921
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	4 cut(s)	53, 187, 274, 940
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	727
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	969
MroXI	GAANNNNTTC	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	777
MslI	CAYNNNNRTG	2 cut(s)	111, 714
Msp20I	TGGCCA	1 cut(s)	777
MspI	CCGG	1 cut(s)	538
MspR9I	CCNGG	3 cut(s)	129, 208, 528
MvaI	CCWGG	3 cut(s)	129, 208, 528
MwoI	GCNNNNNNNGC	7 cut(s)	26, 317, 326, 720, 729, 732, 933
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
NlaIII	CATG	7 cut(s)	110, 340, 713, 782, 842, 967, 971
NlaIV	GGNNCC	2 cut(s)	266, 844
NmuCI	GTSAC	3 cut(s)	297, 438, 455
NsiI	ATGCAT	1 cut(s)	969
PagI	TCATGA	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	626, 725, 728, 731, 734
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PsiI	TTATAA	2 cut(s)	185, 807
Psp6I	CCWGG	3 cut(s)	127, 206, 526
PspFI	CCCAGC	1 cut(s)	845
PspGI	CCWGG	3 cut(s)	127, 206, 526
PspN4I	GGNNCC	2 cut(s)	266, 844
PspPI	GGNCC	8 cut(s)	90, 210, 352, 518, 530, 842, 873, 950
PsuI	RGATCY	3 cut(s)	264, 467, 650
RseI	CAYNNNNRTG	2 cut(s)	111, 714
SatI	GCNGC	5 cut(s)	625, 724, 727, 730, 733
Sau3AI	GATC	9 cut(s)	43, 193, 235, 264, 467, 650, 655, 706, 718
Sau96I	GGNCC	8 cut(s)	90, 210, 352, 518, 530, 842, 873, 950
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	3 cut(s)	129, 208, 528
SduI	GDGCHC	2 cut(s)	322, 921
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	2 cut(s)	7, 298
SfcI	CTRYAG	1 cut(s)	409
SinI	GGWCC	5 cut(s)	90, 210, 352, 530, 842
SmiMI	CAYNNNNRTG	2 cut(s)	111, 714
Sse9I	AATT	4 cut(s)	53, 187, 274, 940
SsiI	CCGC	2 cut(s)	727, 733
SspMI	CTAG	7 cut(s)	41, 120, 315, 443, 522, 792, 816
StyD4I	CCNGG	3 cut(s)	127, 206, 526
StyI	CCWWGG	2 cut(s)	93, 213
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	61
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	4 cut(s)	53, 187, 274, 940
TauI	GCSGC	2 cut(s)	729, 735
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	3 cut(s)	297, 438, 455
TseI	GCWGC	3 cut(s)	624, 723, 729
Tsp45I	GTSAC	3 cut(s)	297, 438, 455
TspDTI	ATGAA	2 cut(s)	408, 876
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	5 cut(s)	90, 210, 352, 530, 842
XagI	CCTNNNNNAGG	1 cut(s)	861
XapI	RAATTY	3 cut(s)	53, 187, 274
XbaI	TCTAGA	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	145
XspI	CTAG	7 cut(s)	41, 120, 315, 443, 522, 792, 816
Zsp2I	ATGCAT	1 cut(s)	969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.