Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Reverse (-)

8558558 .. 8562118

Gene Structure 3561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGCCAATATTTTGCGGCAACTTGGATTTTGACGCGCGGCAGTCAGATGTTGAGCGGCTTTTCAAGCGATATGGGAAAGTTGAGAGGGTGGATATTAAGTCTGGATTTGCTTTCGTCTATATGGACGACGAACGAGATGCTGAGTATGCAATTCGAAGACTTGACAGGACAGAATTTGGTAGGAAGGGACGGCGACTTCGTATTGAGTGGACCAAGCATGAAAGAGGGATTAGGAGACCTGATTCAAGAAGACCTTCTGCTAACATGAAGCCCGCAAAAACCTTGTTTGTTATCAACTTTGATCGATTCCATACCAGGACAAAGGATCTGGAGAGGCACTTTGATCCCTACGGGAAAATAACGAACATAAGGATTAGAAGGAATTTTGCTTTCATTCAATATGAATCACAGGAGGATGCTACCAAAGCTCTGGAGGCAACAAATACAAGCAAGTTCATGGACAGGGTTATTTCTGTGGAATATGCTGCTCGTGATGATGATGATGATAAAAGAAATGGGCACAGTCCTGACAGGAGGGGCCGTGATATGTCTCCTGAGAGAAGAAGCAATGATCGTGGGCGATCTCCAAGTCCATACCGCAGAGATAGGGGAAGCCCTGATTATGGCCATGGTGCCCGAGTAAGTTCTAGAACTGAATCAAGAAGAAGTCCTGATTATGAGAGAGCTGCAAGCCCACCCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 RrnaAD

Protein Analysis

237

Amino Acids

27.93

Weight (kDa)

10.09

Isoelectric Point (pI)

67.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 62	5.3e-15	RNA recognition motif
RRM_1	PF00076	96 - 158	1.6e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	2 cut(s)	38, 40
AciI	CCGC	5 cut(s)	18, 40, 58, 276, 601
AclWI	GGATC	2 cut(s)	336, 341
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	176, 385
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	3 cut(s)	67, 249, 401
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	2 cut(s)	431, 689
AluI	AGCT	2 cut(s)	431, 689
Alw26I	GTCTC	2 cut(s)	232, 558
AlwI	GGATC	2 cut(s)	336, 341
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	5, 541, 628
ApeKI	GCWGC	2 cut(s)	488, 689
ApoI	RAATTY	2 cut(s)	176, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	213, 541
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	2 cut(s)	525, 640
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	166, 259
BbvI	GCAGC	2 cut(s)	475, 676
BceAI	ACGGC	2 cut(s)	209, 528
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	232, 558
BfaI	CTAG	1 cut(s)	651
BisI	GCNGC	5 cut(s)	19, 41, 59, 489, 690
BlsI	GCNGC	5 cut(s)	20, 42, 60, 490, 691
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	213, 541
BmiI	GGNNCC	2 cut(s)	542, 637
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	2 cut(s)	130, 409
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	166, 259
BpmI	CTGGAG	2 cut(s)	353, 455
Bpu14I	TTCGAA	1 cut(s)	157
Bsa29I	ATCGAT	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	702
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	631
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	135, 549
BseNI	ACTGG	1 cut(s)	702
BseSI	GKGCMC	2 cut(s)	525, 640
BseXI	GCAGC	2 cut(s)	475, 676
Bsh1236I	CGCG	2 cut(s)	38, 40
BshFI	GGCC	3 cut(s)	7, 543, 630
BshNI	GGYRCC	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	232, 558
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	3 cut(s)	7, 543, 630
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	525, 640
Bsp143I	GATC	5 cut(s)	304, 328, 346, 574, 584
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	5 cut(s)	18, 40, 58, 276, 601
BspANI	GGCC	3 cut(s)	7, 543, 630
BspCNI	CTCAG	2 cut(s)	136, 550
BspDI	ATCGAT	1 cut(s)	307
BspFNI	CGCG	2 cut(s)	38, 40
BspLI	GGNNCC	2 cut(s)	542, 637
BspPI	GGATC	2 cut(s)	336, 341
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	702
BssECI	CCNNGG	1 cut(s)	631
BssMI	GATC	5 cut(s)	304, 328, 346, 574, 584
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	527
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	276, 694
BstDEI	CTNAG	2 cut(s)	144, 558
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	2 cut(s)	38, 40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	5 cut(s)	307, 331, 349, 577, 587
BstMAI	GTCTC	2 cut(s)	232, 558
BstMBI	GATC	5 cut(s)	304, 328, 346, 574, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstSLI	GKGCMC	2 cut(s)	525, 640
BstUI	CGCG	2 cut(s)	38, 40
BstV1I	GCAGC	2 cut(s)	475, 676
BstV2I	GAAGAC	2 cut(s)	166, 259
BstX2I	RGATCY	1 cut(s)	328
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	7, 543, 630
BsuTUI	ATCGAT	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	631
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	276, 694
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	213, 541
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	4 cut(s)	221, 268, 460, 632
CviJI	RGCY	9 cut(s)	7, 61, 274, 431, 543, 618, 630, 689, 696
CviKI_1	RGCY	9 cut(s)	7, 61, 274, 431, 543, 618, 630, 689, 696
DdeI	CTNAG	2 cut(s)	144, 558
DpnI	GATC	5 cut(s)	306, 330, 348, 576, 586
DpnII	GATC	5 cut(s)	304, 328, 346, 574, 584
EaeI	YGGCCR	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	4 cut(s)	224, 271, 463, 635
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	4 cut(s)	220, 267, 459, 631
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	5 cut(s)	19, 41, 59, 489, 690
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	5 cut(s)	19, 41, 59, 489, 690
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	19, 41, 59, 489, 690
GsuI	CTGGAG	2 cut(s)	353, 455
HaeIII	GGCC	3 cut(s)	7, 543, 630
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	224, 271, 463, 635
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	4 cut(s)	245, 309, 407, 659
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	3 cut(s)	181, 267, 375
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	2 cut(s)	152, 692
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
HpyF3I	CTNAG	2 cut(s)	144, 558
Hsp92II	CATG	4 cut(s)	224, 271, 463, 635
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	5 cut(s)	304, 328, 346, 574, 584
Lsp1109I	GCAGC	2 cut(s)	475, 676
LweI	GCATC	2 cut(s)	130, 409
MaeI	CTAG	1 cut(s)	651
MalI	GATC	5 cut(s)	306, 330, 348, 576, 586
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	5 cut(s)	304, 328, 346, 574, 584
MboII	GAAGA	4 cut(s)	171, 264, 576, 678
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	525, 640
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	3 cut(s)	153, 176, 385
MluNI	TGGCCA	1 cut(s)	630
MnlI	CCTC	6 cut(s)	81, 221, 330, 409, 430, 531
Mox20I	TGGCCA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	2 cut(s)	38, 40
MwoI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	5 cut(s)	304, 328, 346, 574, 584
NlaIII	CATG	4 cut(s)	224, 271, 463, 635
NlaIV	GGNNCC	2 cut(s)	542, 637
NspV	TTCGAA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	4 cut(s)	245, 309, 407, 659
PkrI	GCNGC	5 cut(s)	20, 42, 60, 490, 691
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	542, 637
PspPI	GGNCC	2 cut(s)	213, 541
PsuI	RGATCY	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	5 cut(s)	19, 41, 59, 489, 690
Sau3AI	GATC	5 cut(s)	304, 328, 346, 574, 584
Sau96I	GGNCC	2 cut(s)	213, 541
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	525, 640
SetI	ASST	5 cut(s)	244, 259, 287, 433, 691
SfaNI	GCATC	2 cut(s)	130, 409
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	3 cut(s)	153, 176, 385
SsiI	CCGC	5 cut(s)	18, 40, 58, 276, 601
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	157, 307
TasI	AATT	3 cut(s)	153, 176, 385
TauI	GCSGC	3 cut(s)	21, 43, 61
TfiI	GAWTC	4 cut(s)	245, 309, 407, 659
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	488, 689
TspDTI	ATGAA	5 cut(s)	237, 284, 385, 420, 448
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	176, 385
XbaI	TCTAGA	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.