Prupe.2G154900_v2.0.a1

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000932
Physical Location & Seq
Forward (+)
20843609 .. 20847408
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G154900.2

Sequence Viewer

Length: 981 bp
ATGAGGCCAATATTTTGCGGCAACTTGGATTTTGATGCAAGGCAAGGGGATGTTGAGCGGCTTTTCAGGAGATATGGGAAAGTTGAGAGGGTGGATGTTAAGTCTGGATTTGCTTTTGTCTATATGGATGATGAACGAGACGCTGAGTATGCAATTCGGAGACTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGACTTCGTATTGAGTGGACCAAGCATGAAAGAGGGATTAGGAAACCTGTTGATTCAAGAAGACCTTCAGCGAACACAAAGCCCTCGAAAACCTTGTTTGTTATCAATTTTGATCCAATCCATACCAGGACAAGGGATCTGGAGAGGCACTTTGATCCATACGGAAAAATAGTGAACATAAGGATTAGAAGGAATTTTGCATTCATTCAATATGAATCACAGGAAGATGCTACCAAAGCATTGGAAGCAACAAATTCAAGCAAGTTCATGGACAGGGTTATTTCCGTGGAATATGCTGTTCGTGATGATGATGATAGAAGAAATGGACACAGTCCTGATAGAAGGGGCCGTGACATGTCTCCTGAAAGAAGAAGCAATGATCGTGGGCGATCTCCAAGTCCATACCGCAGAGATAGGGCTAGCCCTGATTATGGCCATGGCTCCCGTATAAGTTCTAGATCTGATCCAAGAAGAAGTCCTGATTATGAGAGAGCTGAAAGCCCAATCAATGATAGATCCCGTCCTAGTTCTAGACCTGAACCAAGGAGGAGTCCCAGTTATGAGAGGGCTGCTAGCCCAGTCAATGATAGATCCCGTCCAAGTTCTAGACGTGAACCAAGAAGAAGTCCCAGTTATGAGAGAGATGCAAGCCCAGTCAATGATAGATCCCGTCCAAGTTCTAAACCTGAACCAAGAAGAAGTCCCAGTTATGAGAGAGCTGCAAGCCCAGTTAATGATAGATACCGCAGCCGTTCACCCCCACCGCGGGAAAGATCCCGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 RrnaAD

Protein Analysis

327

Amino Acids

38.4

Weight (kDa)

10.75

Isoelectric Point (pI)

94.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 58
AccII CGCG 1 cut(s) 961
AciI CCGC 6 cut(s) 18, 58, 601, 940, 959, 961
AclWI GGATC 8 cut(s) 302, 339, 344, 653, 705, 780, 855, 963
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 3 cut(s) 176, 388, 448
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 4 cut(s) 327, 626, 960, 961
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 3 cut(s) 252, 404, 453
AjiI CACGTC 1 cut(s) 806
AjnI CCWGG 1 cut(s) 320
AluBI AGCT 2 cut(s) 689, 914
AluI AGCT 2 cut(s) 689, 914
Alw26I GTCTC 3 cut(s) 132, 154, 558
AlwI GGATC 8 cut(s) 302, 339, 344, 653, 705, 780, 855, 963
AoxI GGCC 3 cut(s) 5, 541, 628
ApeKI GCWGC 3 cut(s) 764, 914, 942
ApoI RAATTY 3 cut(s) 176, 388, 448
ArsI GACNNNNNNTTYG 2 cut(s) 183, 215
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 213, 541
AsuHPI GGTGA 1 cut(s) 942
AsuNHI GCTAGC 2 cut(s) 614, 767
AvaII GGWCC 1 cut(s) 213
BalI TGGCCA 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 751, 901, 954
BceAI ACGGC 2 cut(s) 528, 930
BciT130I CCWGG 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 132, 154, 558
BfaI CTAG 6 cut(s) 615, 651, 720, 726, 768, 801
BglII AGATCT 1 cut(s) 653
BisI GCNGC 5 cut(s) 19, 59, 765, 915, 943
BlsI GCNGC 5 cut(s) 20, 60, 766, 916, 944
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 806
BmgT120I GGNCC 2 cut(s) 213, 541
BmiI GGNNCC 2 cut(s) 542, 637
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 6 cut(s) 744, 767, 819, 842, 894, 917
BmsI GCATC 3 cut(s) 25, 412, 829
BmtI GCTAGC 2 cut(s) 618, 771
BmuI ACTGGG 6 cut(s) 744, 767, 819, 842, 894, 917
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 356
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 4 cut(s) 480, 631, 737, 959
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 626, 960, 961
Bse1I ACTGG 6 cut(s) 750, 773, 825, 848, 900, 923
Bse3DI GCAATG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 4 cut(s) 480, 631, 737, 959
BseGI GGATG 3 cut(s) 55, 100, 133
BseLI CCNNNNNNNGG 4 cut(s) 327, 626, 960, 961
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 6 cut(s) 750, 773, 825, 848, 900, 923
BseRI GAGGAG 1 cut(s) 757
BseXI GCAGC 3 cut(s) 751, 901, 954
Bsh1236I CGCG 1 cut(s) 961
BshFI GGCC 3 cut(s) 7, 543, 630
BslFI GGGAC 4 cut(s) 204, 732, 807, 882
BslI CCNNNNNNNGG 4 cut(s) 327, 626, 960, 961
BsmAI GTCTC 3 cut(s) 132, 154, 558
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 4 cut(s) 204, 732, 807, 882
BsmI GAATGC 1 cut(s) 395
BsnI GGCC 3 cut(s) 7, 543, 630
Bsp19I CCATGG 1 cut(s) 631
BspACI CCGC 6 cut(s) 18, 58, 601, 940, 959, 961
BspANI GGCC 3 cut(s) 7, 543, 630
BspCNI CTCAG 1 cut(s) 136
BspFNI CGCG 1 cut(s) 961
BspLI GGNNCC 2 cut(s) 542, 637
BspOI GCTAGC 2 cut(s) 618, 771
BspPI GGATC 8 cut(s) 302, 339, 344, 653, 705, 780, 855, 963
BsrBI CCGCTC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 577
BsrI ACTGG 6 cut(s) 750, 773, 825, 848, 900, 923
BssECI CCNNGG 4 cut(s) 480, 631, 737, 959
BssNI GRCGYC 1 cut(s) 193
BssT1I CCWWGG 2 cut(s) 631, 737
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 193
BstC8I GCNNGC 4 cut(s) 616, 769, 844, 919
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 3 cut(s) 480, 631, 959
BstF5I GGATG 3 cut(s) 55, 100, 133
BstFNI CGCG 1 cut(s) 961
BstMAI GTCTC 3 cut(s) 132, 154, 558
BstMWI GCNNNNNNNGC 3 cut(s) 149, 431, 440
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 553
BstSCI CCNGG 1 cut(s) 320
BstUI CGCG 1 cut(s) 961
BstV1I GCAGC 3 cut(s) 751, 901, 954
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 6 cut(s) 331, 653, 710, 785, 860, 968
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 6 cut(s) 331, 653, 710, 785, 860, 968
BsuRI GGCC 3 cut(s) 7, 543, 630
BtgI CCRYGG 3 cut(s) 480, 631, 959
BtrI CACGTC 1 cut(s) 806
BtsCI GGATG 3 cut(s) 55, 100, 133
Cac8I GCNNGC 4 cut(s) 616, 769, 844, 919
Cfr13I GGNCC 2 cut(s) 213, 541
Cfr42I CCGCGG 1 cut(s) 962
CseI GACGC 2 cut(s) 149, 201
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 4 cut(s) 221, 463, 550, 632
DdeI CTNAG 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 628
Eco130I CCWWGG 2 cut(s) 631, 737
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 631, 737
ErhI CCWWGG 2 cut(s) 631, 737
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 4 cut(s) 224, 466, 553, 635
FalI AAGNNNNNCTT 2 cut(s) 244, 276
FaqI GGGAC 4 cut(s) 204, 732, 807, 882
FatI CATG 4 cut(s) 220, 462, 549, 631
FauI CCCGC 1 cut(s) 954
Fnu4HI GCNGC 5 cut(s) 19, 59, 765, 915, 943
FokI GGATG 3 cut(s) 62, 107, 140
Fsp4HI GCNGC 5 cut(s) 19, 59, 765, 915, 943
FspBI CTAG 6 cut(s) 615, 651, 720, 726, 768, 801
GluI GCNGC 5 cut(s) 19, 59, 765, 915, 943
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 3 cut(s) 7, 543, 630
HgaI GACGC 2 cut(s) 149, 201
Hin1I GRCGYC 1 cut(s) 193
Hin1II CATG 4 cut(s) 224, 466, 553, 635
HinfI GANTC 3 cut(s) 248, 410, 745
HphI GGTGA 1 cut(s) 942
Hpy166II GTNNAC 4 cut(s) 213, 370, 809, 950
Hpy188I TCNGA 2 cut(s) 159, 658
Hpy8I GTNNAC 4 cut(s) 213, 370, 809, 950
HpyAV CCTTC 4 cut(s) 181, 270, 378, 531
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 1 cut(s) 805
HpyCH4V TGCA 5 cut(s) 38, 152, 395, 842, 917
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 431, 440
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 805
Hsp92I GRCGYC 1 cut(s) 193
Hsp92II CATG 4 cut(s) 224, 466, 553, 635
KspI CCGCGG 1 cut(s) 962
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 3 cut(s) 751, 901, 954
LweI GCATC 3 cut(s) 25, 412, 829
MaeI CTAG 6 cut(s) 615, 651, 720, 726, 768, 801
MaeII ACGT 1 cut(s) 805
MaeIII GTNAC 1 cut(s) 545
MbiI CCGCTC 1 cut(s) 58
MboII GAAGA 7 cut(s) 267, 431, 525, 576, 678, 828, 903
MflI RGATCY 6 cut(s) 331, 653, 710, 785, 860, 968
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 5 cut(s) 153, 176, 301, 388, 448
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 1 cut(s) 754
MnlI CCTC 6 cut(s) 81, 221, 289, 333, 735, 753
Mox20I TGGCCA 1 cut(s) 630
MroXI GAANNNNTTC 1 cut(s) 259
MscI TGGCCA 1 cut(s) 630
MseI TTAA 2 cut(s) 99, 927
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 961
MspR9I CCNGG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 395
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 1 cut(s) 961
MwoI GCNNNNNNNGC 3 cut(s) 149, 431, 440
NcoI CCATGG 1 cut(s) 631
NheI GCTAGC 2 cut(s) 614, 767
NlaIII CATG 4 cut(s) 224, 466, 553, 635
NlaIV GGNNCC 2 cut(s) 542, 637
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 1 cut(s) 553
PciI ACATGT 1 cut(s) 549
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PctI GAATGC 1 cut(s) 395
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 2 cut(s) 248, 410
PflFI GACNNNGTC 1 cut(s) 525
PkrI GCNGC 5 cut(s) 20, 60, 766, 916, 944
PleI GAGTC 1 cut(s) 753
PpsI GAGTC 1 cut(s) 753
PscI ACATGT 1 cut(s) 549
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 542, 637
PspPI GGNCC 2 cut(s) 213, 541
PsuI RGATCY 6 cut(s) 331, 653, 710, 785, 860, 968
PsyI GACNNNGTC 1 cut(s) 525
SacII CCGCGG 1 cut(s) 962
SaqAI TTAA 2 cut(s) 99, 927
SatI GCNGC 5 cut(s) 19, 59, 765, 915, 943
Sau96I GGNCC 2 cut(s) 213, 541
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 1 cut(s) 322
SetI ASST 8 cut(s) 244, 262, 290, 691, 733, 808, 883, 916
SfaNI GCATC 3 cut(s) 25, 412, 829
Sfr303I CCGCGG 1 cut(s) 962
SgrBI CCGCGG 1 cut(s) 962
SinI GGWCC 1 cut(s) 213
Sse9I AATT 5 cut(s) 153, 176, 301, 388, 448
SsiI CCGC 6 cut(s) 18, 58, 601, 940, 959, 961
SspI AATATT 1 cut(s) 12
SspMI CTAG 6 cut(s) 615, 651, 720, 726, 768, 801
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 2 cut(s) 631, 737
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 1 cut(s) 808
TaqI TCGA 1 cut(s) 281
TasI AATT 5 cut(s) 153, 176, 301, 388, 448
TauI GCSGC 2 cut(s) 21, 61
TfiI GAWTC 2 cut(s) 248, 410
Tru1I TTAA 2 cut(s) 99, 927
Tru9I TTAA 2 cut(s) 99, 927
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 3 cut(s) 764, 914, 942
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 5 cut(s) 147, 237, 388, 423, 451
TspGWI ACGGA 2 cut(s) 372, 469
Tth111I GACNNNGTC 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 3 cut(s) 176, 388, 448
XbaI TCTAGA 3 cut(s) 650, 725, 800
XceI RCATGY 1 cut(s) 553
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 6 cut(s) 615, 651, 720, 726, 768, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.