Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Reverse (-)

18321856 .. 18326085

Gene Structure 4230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1128300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAGGCCAATATTTTGCGGCAACTTGGATTTTGATGCGCGGCAGTCAGATGTTGAGCGGCTTTTCAAGCGATATGGGAAAGTTGAGAGGGTGGATATTAAGTCTGGATTTGCTTTTGTCTATATGGACGACGAACGAGATGCTGAGTATGCAATTCGAAGACTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGGCTTCGTATTGAGTGGACCAAGCATGAAAGAGGGATTAGGAGACCTGATTCAAGAAGGCCTTCAGCTAACACGAAGCCCTCAAAAACCTTGTTTGTTATCAACTTTGATCCAGTCCATACCAGGACAAAGGATCTGGAGAGGCACTTTGATCCCTATGGGAAAATTACAAACGTAAGGATTAGAAGGAATTTTGCTTTCATTCAATATGAATCACAGGAGGATGCTACTAAAGCTTTGGAGGCAACAAATACAAGCAAGTTCATGGATAGGGTTATTTCTGTGGAATACGCTGCTCGTGATGATGATGATAAAAGAAATGGGCAGAGTCCTGACAGGAGGGGCCGTGATATGTCTCCTGAGAGAAGAGGCAATGATCGTGGGCGATCTCCAAGCCCGTACCGCAGAGATAGGGGAAGCCCTGATTATGGCCATGGTGCCCGCATAAGTTCTAGAACTGAATCAAGAAGAAGTCCTGATTATGAGAGAGCTGCAAGCCCAGTCAATGATAGATCTCGTCCAAGTTCTAGACCTGATCCTAGAAGAAGTCCGGATTACGAGAGATCTGCAAGCCCAGTCAATGATCGATCTCGTCCAAGTTCTAGACCTGAACCAAGAAGTCCCAGTGATGAGGGAGCTATAAGCCCCGTCAACGATGGATACCGCAGCCGTTCACCCCCACCCCGGGAAAGATCTCGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 RrnaAD

Protein Analysis

300

Amino Acids

34.89

Weight (kDa)

10.34

Isoelectric Point (pI)

85.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 62	8e-15	RNA recognition motif
RRM_1	PF00076	96 - 158	1.4e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	745
AciI	CCGC	6 cut(s)	18, 40, 58, 598, 637, 859
AclWI	GGATC	4 cut(s)	299, 336, 341, 725
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	176, 385
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	3 cut(s)	623, 879, 880
AgsI	TTSAA	3 cut(s)	67, 249, 401
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	263, 431, 686, 833
AluI	AGCT	4 cut(s)	263, 431, 686, 833
Alw26I	GTCTC	2 cut(s)	232, 555
AlwI	GGATC	4 cut(s)	299, 336, 341, 725
Ama87I	CYCGRG	1 cut(s)	879
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	4 cut(s)	5, 254, 538, 625
ApeKI	GCWGC	3 cut(s)	488, 686, 861
ApoI	RAATTY	2 cut(s)	176, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	213, 538
AsuC2I	CCSGG	2 cut(s)	880, 881
AsuHPI	GGTGA	1 cut(s)	861
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	879
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	632
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	475, 673, 873
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	2 cut(s)	525, 849
BcgI	CGANNNNNNTGC	4 cut(s)	122, 156, 743, 777
BciT130I	CCWGG	1 cut(s)	319
BciVI	GTATCC	1 cut(s)	848
BcnI	CCSGG	2 cut(s)	880, 881
BcoDI	GTCTC	2 cut(s)	232, 555
BfaI	CTAG	4 cut(s)	648, 723, 735, 798
BfuI	GTATCC	1 cut(s)	848
BglII	AGATCT	3 cut(s)	707, 758, 887
BisI	GCNGC	6 cut(s)	19, 41, 59, 489, 687, 862
BlsI	GCNGC	6 cut(s)	20, 42, 60, 490, 688, 863
Bme1390I	CCNGG	3 cut(s)	319, 880, 881
Bme18I	GGWCC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	879
BmgT120I	GGNCC	2 cut(s)	213, 538
BmiI	GGNNCC	2 cut(s)	539, 634
BmrFI	CCNGG	3 cut(s)	319, 880, 881
BmrI	ACTGGG	3 cut(s)	689, 764, 813
BmsI	GCATC	3 cut(s)	25, 130, 409
BmuI	ACTGGG	3 cut(s)	689, 764, 813
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	880, 881
Bsa29I	ATCGAT	1 cut(s)	781
BsaHI	GRCGYC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	3 cut(s)	628, 878, 879
BsaWI	WCCGGW	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	623, 879, 880
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	4 cut(s)	308, 695, 770, 819
Bse3DI	GCAATG	1 cut(s)	574
BseAI	TCCGGA	1 cut(s)	745
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	781
BseDI	CCNNGG	3 cut(s)	628, 878, 879
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	623, 879, 880
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	135, 546
BseNI	ACTGG	4 cut(s)	308, 695, 770, 819
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	475, 673, 873
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	7, 256, 540, 627
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	879
BsiSI	CCGG	3 cut(s)	196, 746, 880
BslFI	GGGAC	2 cut(s)	204, 801
BslI	CCNNNNNNNGG	3 cut(s)	623, 879, 880
BsmAI	GTCTC	2 cut(s)	232, 555
BsmFI	GGGAC	2 cut(s)	204, 801
BsnI	GGCC	4 cut(s)	7, 256, 540, 627
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	879
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp13I	TCCGGA	1 cut(s)	745
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	6 cut(s)	18, 40, 58, 598, 637, 859
BspANI	GGCC	4 cut(s)	7, 256, 540, 627
BspCNI	CTCAG	2 cut(s)	136, 547
BspDI	ATCGAT	1 cut(s)	781
BspEI	TCCGGA	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	539, 634
BspPI	GGATC	4 cut(s)	299, 336, 341, 725
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	4 cut(s)	308, 695, 770, 819
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	628, 878, 879
BssNI	GRCGYC	1 cut(s)	193
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	628
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	556
BstACI	GRCGYC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	4 cut(s)	197, 637, 691, 766
BstDEI	CTNAG	2 cut(s)	144, 555
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	40
BstMAI	GTCTC	2 cut(s)	232, 555
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 149, 428, 437, 597
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	3 cut(s)	317, 878, 879
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	475, 673, 873
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	4 cut(s)	328, 707, 758, 887
BstYI	RGATCY	4 cut(s)	328, 707, 758, 887
Bsu15I	ATCGAT	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	4 cut(s)	7, 256, 540, 627
BsuTUI	ATCGAT	1 cut(s)	781
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	826
Cac8I	GCNNGC	4 cut(s)	197, 637, 691, 766
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	213, 538
Cfr9I	CCCGGG	1 cut(s)	879
ClaI	ATCGAT	1 cut(s)	781
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	3 cut(s)	221, 460, 629
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	144, 555
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	879
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	3 cut(s)	224, 463, 632
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	204, 801
FatI	CATG	3 cut(s)	220, 459, 628
FauI	CCCGC	1 cut(s)	644
Fnu4HI	GCNGC	6 cut(s)	19, 41, 59, 489, 687, 862
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	6 cut(s)	19, 41, 59, 489, 687, 862
FspBI	CTAG	4 cut(s)	648, 723, 735, 798
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	19, 41, 59, 489, 687, 862
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	7, 256, 540, 627
HapII	CCGG	3 cut(s)	196, 746, 880
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	224, 463, 632
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	4 cut(s)	245, 407, 523, 656
HpaII	CCGG	3 cut(s)	196, 746, 880
HphI	GGTGA	1 cut(s)	861
Hpy166II	GTNNAC	3 cut(s)	213, 847, 869
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	3 cut(s)	213, 847, 869
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	181, 246, 267, 375
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	3 cut(s)	152, 689, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 149, 428, 437, 597
HpyF3I	CTNAG	2 cut(s)	144, 555
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	224, 463, 632
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	745
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	830
Lsp1109I	GCAGC	3 cut(s)	475, 673, 873
LweI	GCATC	3 cut(s)	25, 130, 409
MaeI	CTAG	4 cut(s)	648, 723, 735, 798
MaeII	ACGT	1 cut(s)	369
MbiI	CCGCTC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	171, 573, 675, 750
MflI	RGATCY	4 cut(s)	328, 707, 758, 887
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	4 cut(s)	153, 176, 360, 385
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	9 cut(s)	81, 221, 286, 330, 409, 430, 528, 557, 820
Mox20I	TGGCCA	1 cut(s)	627
MroI	TCCGGA	1 cut(s)	745
MroNI	GCCGGC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	627
MspI	CCGG	3 cut(s)	196, 746, 880
MspR9I	CCNGG	3 cut(s)	319, 880, 881
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	5 cut(s)	67, 149, 428, 437, 597
NaeI	GCCGGC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	880, 881
NcoI	CCATGG	1 cut(s)	628
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	224, 463, 632
NlaIV	GGNNCC	2 cut(s)	539, 634
NspV	TTCGAA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	245, 407, 656
PkrI	GCNGC	6 cut(s)	20, 42, 60, 490, 688, 863
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	539, 634
PspPI	GGNCC	2 cut(s)	213, 538
PsuI	RGATCY	4 cut(s)	328, 707, 758, 887
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	19, 41, 59, 489, 687, 862
Sau96I	GGNCC	2 cut(s)	213, 538
SchI	GAGTC	1 cut(s)	532
ScrFI	CCNGG	3 cut(s)	319, 880, 881
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	9 cut(s)	244, 265, 287, 372, 433, 688, 730, 805, 835
SfaNI	GCATC	3 cut(s)	25, 130, 409
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	213
SmaI	CCCGGG	1 cut(s)	881
Sse9I	AATT	4 cut(s)	153, 176, 360, 385
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	6 cut(s)	18, 40, 58, 598, 637, 859
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	4 cut(s)	648, 723, 735, 798
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	317, 878, 879
StyI	CCWWGG	1 cut(s)	628
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	157, 781
TasI	AATT	4 cut(s)	153, 176, 360, 385
TauI	GCSGC	3 cut(s)	21, 43, 61
TfiI	GAWTC	3 cut(s)	245, 407, 656
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	826
TseI	GCWGC	3 cut(s)	488, 686, 861
TspDTI	ATGAA	4 cut(s)	237, 385, 420, 448
TspMI	CCCGGG	1 cut(s)	879
TspRI	CASTG	1 cut(s)	826
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	176, 385
XbaI	TCTAGA	3 cut(s)	647, 722, 797
XmaI	CCCGGG	1 cut(s)	879
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	4 cut(s)	648, 723, 735, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.