Rroxscaffold_4G00281870

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
4085967 .. 4089962
3996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281870.1

Sequence Viewer

Length: 1134 bp
ATGAGGCCCATTTTTTGTGGGAATTTTGAGTATGATGCTCGACAAAATGATCTGGAGCGACTTTTTGGAAGATATGGGAAGGTTGATAGAGTGGATATGAAGGCTGGTTTTGCATTCATTTACATGGATGACGAGAGAGATGCTGACTATGCAATACGGGGACTCGATCGGAGAGAATTTGGTCGAAAAGGGCGCAGGCTTCGTGTTGAATGGTCAAAGGTATCCAGTCATGAGCGTGGTTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTAATACAAGACCGTCAAAGACCTTGTTTGTTATAAATTTTGATCCATATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAATTTTGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGAGGCTACAAATATGAGCAAGCTGATGGACCGCGTTATATCGGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTATAGCCCTGACAGGAGAAGTCGTGATAGGTCACTAGAGAGAGGCCGTGACAGAAGAAGATCCCCAAGTCCCTACAAAAGAGAGAGGGGAAGCCCTGATTATGGCCGTGGCCCTAGCCCTGGTCCATACCGGAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAGAGAGCAAGCCCTGACTATGCCCGTGGGCGCAGCCCAAGTCCTTATAGGAGGGAGAGATCTGATCGTGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGTTGATCATGGCCGTGATCGCAGCCGCAGCCGTAGTCCTTATGTTGGAAGAGATAGAGCTGTTGCGGAAAATGGCCATGCTCCAAGTCCTAGTCCTCCTCCTTATAAGAGAGCTAGAGTTAGCCCTGAAAATGGTCATGGTCCCAGCAGTAGCCCTTATGAAGGAGAGAGGGCCAACAGCCCCGAAGAAGGTCGTATTCCAAGTCCCAACTCTGTGCCCGACGGCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGCCGTTCACCCCAGGTTGAGGAGGAATGA

Protein Analysis

377

Amino Acids

43.65

Weight (kDa)

10.19

Isoelectric Point (pI)

79.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 62 1.4e-12 RNA recognition motif
RRM_1 PF00076 100 - 162 4.3e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 930
AccII CGCG 1 cut(s) 480
AciI CCGC 3 cut(s) 478, 850, 890
AclWI GGATC 5 cut(s) 311, 353, 382, 395, 585
AcoI YGGCCR 3 cut(s) 634, 835, 898
AcsI RAATTY 4 cut(s) 22, 176, 310, 397
AfiI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
AgsI TTSAA 4 cut(s) 209, 261, 273, 494
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 4 cut(s) 250, 329, 649, 1116
AluBI AGCT 3 cut(s) 469, 884, 938
AluI AGCT 3 cut(s) 469, 884, 938
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 5 cut(s) 311, 353, 382, 395, 585
AoxI GGCC 8 cut(s) 5, 574, 634, 640, 835, 898, 996, 1073
ApeKI GCWGC 3 cut(s) 747, 846, 852
ApoI RAATTY 4 cut(s) 22, 176, 310, 397
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 1 cut(s) 268
AspLEI GCGC 2 cut(s) 195, 747
AspS9I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
AsuHPI GGTGA 2 cut(s) 832, 1104
AvaII GGWCC 4 cut(s) 333, 475, 653, 965
BaeGI GKGCMC 2 cut(s) 445, 1044
BalI TGGCCA 1 cut(s) 900
BamHI GGATCC 1 cut(s) 387
BbsI GAAGAC 2 cut(s) 253, 261
BbvI GCAGC 3 cut(s) 759, 858, 864
BccI CCATC 2 cut(s) 466, 521
BceAI ACGGC 6 cut(s) 561, 621, 822, 840, 1063, 1092
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 4 cut(s) 252, 331, 651, 1118
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 1 cut(s) 829
BcoDI GTCTC 1 cut(s) 796
BfaI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
BfmI CTRYAG 1 cut(s) 532
BfuI GTATCC 1 cut(s) 232
BglII AGATCT 1 cut(s) 773
BisI GCNGC 4 cut(s) 748, 847, 850, 853
BlsI GCNGC 4 cut(s) 749, 848, 851, 854
Bme1390I CCNGG 4 cut(s) 252, 331, 651, 1118
Bme18I GGWCC 4 cut(s) 333, 475, 653, 965
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
BmiI GGNNCC 2 cut(s) 389, 967
BmrFI CCNGG 4 cut(s) 252, 331, 651, 1118
BmsI GCATC 3 cut(s) 25, 130, 421
BpiI GAAGAC 2 cut(s) 253, 261
BpmI CTGGAG 3 cut(s) 74, 467, 778
BsaBI GATNNNNATC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 5 cut(s) 336, 637, 649, 739, 1116
BsaWI WCCGGW 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
Bse1I ACTGG 3 cut(s) 225, 450, 795
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 4 cut(s) 252, 331, 651, 1118
BseDI CCNNGG 5 cut(s) 336, 637, 649, 739, 1116
BseGI GGATG 2 cut(s) 133, 436
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
BseNI ACTGG 3 cut(s) 225, 450, 795
BseRI GAGGAG 1 cut(s) 912
BseSI GKGCMC 2 cut(s) 445, 1044
BseXI GCAGC 3 cut(s) 759, 858, 864
BseYI CCCAGC 1 cut(s) 968
Bsh1236I CGCG 1 cut(s) 480
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 8 cut(s) 7, 576, 636, 642, 837, 900, 998, 1075
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 661
BslFI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
BslI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 8 cut(s) 7, 576, 636, 642, 837, 900, 998, 1075
Bso31I GGTCTC 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 445, 1044
BspACI CCGC 3 cut(s) 478, 850, 890
BspANI GGCC 8 cut(s) 7, 576, 636, 642, 837, 900, 998, 1075
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 389, 967
BspPI GGATC 5 cut(s) 311, 353, 382, 395, 585
BspTNI GGTCTC 1 cut(s) 796
BsrI ACTGG 3 cut(s) 225, 450, 795
BssECI CCNNGG 5 cut(s) 336, 637, 649, 739, 1116
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 4 cut(s) 252, 331, 651, 1118
Bst4CI ACNGT 1 cut(s) 288
Bst6I CTCTTC 2 cut(s) 517, 868
BstC8I GCNNGC 3 cut(s) 197, 467, 724
BstDSI CCRYGG 2 cut(s) 637, 739
BstENI CCTNNNNNAGG 1 cut(s) 984
BstF5I GGATG 2 cut(s) 133, 436
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 2 cut(s) 195, 747
BstMAI GTCTC 1 cut(s) 796
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
BstNI CCWGG 4 cut(s) 252, 331, 651, 1118
BstSCI CCNGG 4 cut(s) 250, 329, 649, 1116
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 2 cut(s) 445, 1044
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 3 cut(s) 759, 858, 864
BstV2I GAAGAC 2 cut(s) 253, 261
BstX2I RGATCY 3 cut(s) 387, 590, 773
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 3 cut(s) 387, 590, 773
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 8 cut(s) 7, 576, 636, 642, 837, 900, 998, 1075
BtgI CCRYGG 2 cut(s) 637, 739
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 2 cut(s) 133, 436
BtsIMutI CAGTG 1 cut(s) 443
Cac8I GCNNGC 3 cut(s) 197, 467, 724
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 195, 747
Cfr13I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
CsiI ACCWGGT 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 7 cut(s) 124, 230, 833, 902, 962, 1087, 1091
EaeI YGGCCR 3 cut(s) 634, 835, 898
Eam1104I CTCTTC 2 cut(s) 517, 868
EarI CTCTTC 2 cut(s) 517, 868
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 4 cut(s) 333, 475, 653, 965
EcoNI CCTNNNNNAGG 1 cut(s) 984
EcoRII CCWGG 4 cut(s) 250, 329, 649, 1116
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 7 cut(s) 127, 233, 836, 905, 965, 1090, 1094
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
FatI CATG 7 cut(s) 123, 229, 832, 901, 961, 1086, 1090
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 4 cut(s) 748, 847, 850, 853
FokI GGATG 2 cut(s) 140, 443
Fsp4HI GCNGC 4 cut(s) 748, 847, 850, 853
FspBI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
GlaI GCGC 2 cut(s) 194, 746
GluI GCNGC 4 cut(s) 748, 847, 850, 853
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 3 cut(s) 74, 467, 778
HaeIII GGCC 8 cut(s) 7, 576, 636, 642, 837, 900, 998, 1075
HapII CCGG 1 cut(s) 661
HhaI GCGC 2 cut(s) 195, 747
Hin1II CATG 7 cut(s) 127, 233, 836, 905, 965, 1090, 1094
Hin6I GCGC 2 cut(s) 193, 745
HinP1I GCGC 2 cut(s) 193, 745
HinfI GANTC 2 cut(s) 162, 419
HpaII CCGG 1 cut(s) 661
HphI GGTGA 2 cut(s) 832, 1104
Hpy166II GTNNAC 1 cut(s) 1112
Hpy188I TCNGA 3 cut(s) 171, 392, 778
Hpy188III TCNNGA 7 cut(s) 53, 230, 243, 261, 506, 554, 680
Hpy8I GTNNAC 1 cut(s) 1112
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 7 cut(s) 73, 94, 258, 387, 705, 980, 1007
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 4 cut(s) 113, 152, 500, 1090
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 7 cut(s) 127, 233, 836, 905, 965, 1090, 1094
HspAI GCGC 2 cut(s) 193, 745
Ksp22I TGATCA 1 cut(s) 829
LmnI GCTCC 2 cut(s) 55, 910
Lsp1109I GCAGC 3 cut(s) 759, 858, 864
LweI GCATC 3 cut(s) 25, 130, 421
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 3 cut(s) 420, 561, 578
MboII GAAGA 8 cut(s) 81, 258, 261, 534, 597, 600, 885, 1022
MflI RGATCY 3 cut(s) 387, 590, 773
MhlI GDGCHC 2 cut(s) 445, 1044
MlsI TGGCCA 1 cut(s) 900
MluCI AATT 5 cut(s) 22, 176, 310, 397, 1063
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 2 cut(s) 156, 428
MmeI TCCRAC 1 cut(s) 850
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 1092
MroXI GAANNNNTTC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 900
MslI CAYNNNNRTG 3 cut(s) 122, 234, 837
Msp20I TGGCCA 1 cut(s) 900
MspI CCGG 1 cut(s) 661
MspR9I CCNGG 4 cut(s) 252, 331, 651, 1118
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 4 cut(s) 252, 331, 651, 1118
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
NdeI CATATG 1 cut(s) 364
NlaIII CATG 7 cut(s) 127, 233, 836, 905, 965, 1090, 1094
NlaIV GGNNCC 2 cut(s) 389, 967
NmuCI GTSAC 3 cut(s) 420, 561, 578
NsiI ATGCAT 1 cut(s) 1092
PagI TCATGA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 805
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 268
PkrI GCNGC 4 cut(s) 749, 848, 851, 854
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 2 cut(s) 156, 427
PpsI GAGTC 2 cut(s) 156, 427
PsiI TTATAA 2 cut(s) 308, 930
Psp6I CCWGG 4 cut(s) 250, 329, 649, 1116
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 4 cut(s) 250, 329, 649, 1116
PspN4I GGNNCC 2 cut(s) 389, 967
PspPI GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
PsuI RGATCY 3 cut(s) 387, 590, 773
PvuI CGATCG 1 cut(s) 169
RseI CAYNNNNRTG 3 cut(s) 122, 234, 837
SatI GCNGC 4 cut(s) 748, 847, 850, 853
Sau96I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
SchI GAGTC 2 cut(s) 156, 428
ScrFI CCNGG 4 cut(s) 252, 331, 651, 1118
SduI GDGCHC 2 cut(s) 445, 1044
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 3 cut(s) 25, 130, 421
SfcI CTRYAG 1 cut(s) 532
SinI GGWCC 4 cut(s) 333, 475, 653, 965
SmiMI CAYNNNNRTG 3 cut(s) 122, 234, 837
Sse9I AATT 5 cut(s) 22, 176, 310, 397, 1063
SsiI CCGC 3 cut(s) 478, 850, 890
SspMI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
StyD4I CCNGG 4 cut(s) 250, 329, 649, 1116
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 288
TaiI ACGT 1 cut(s) 694
TaqI TCGA 3 cut(s) 40, 165, 184
TasI AATT 5 cut(s) 22, 176, 310, 397, 1063
TauI GCSGC 1 cut(s) 852
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 3 cut(s) 420, 561, 578
TseI GCWGC 3 cut(s) 747, 846, 852
Tsp45I GTSAC 3 cut(s) 420, 561, 578
TspDTI ATGAA 4 cut(s) 106, 113, 531, 999
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 4 cut(s) 333, 475, 653, 965
XagI CCTNNNNNAGG 1 cut(s) 984
XapI RAATTY 4 cut(s) 22, 176, 310, 397
XbaI TCTAGA 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.