Rorug01G0226500

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
32613446 .. 32614011
566 bp
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UTR
Exon/CDS
Intron
Rorug01G0226500.1

Sequence Viewer

Length: 456 bp
ATGATTAATGTTAGTGAGAACAAACTTCAAGGGAGATTACCGAGGTCATTGGCTAATTGTGTGATGCTTGAGTTCATTGTTCTCTCAGACAATCAATTCAATGATGTTTTCCCCTTTTGGTTGGGAAATCTCCCAGAGTTAAAACTTTTGGCACTGCACCATAATGGGTTCTATGGTGTCATTGGGAAACAGATAAAGAACCTTTGTTTCCCCGAGTTGCGCATTCTTGATCTGTCTCACAATAATTTCAGTCGTAAGTTTCCATTTGAGTTCATCTTTTCTAGCAATGCTATGAGAGGCATAACTGTAAGCTACTCCACATACATGGACACATACTCTAATCTAAAAGTCAGTGCTTTTGTGCAGTCTTTCAGTTATGAGTACTCAATCACCATAGCAAATAAAGATGTTGATAGATACTACCAGAAGAGTTCAAGAAGACCTCGGGGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

17.5

Weight (kDa)

9.3

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 221
AfaI GTAC 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 3 cut(s) 29, 100, 435
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 240
Ama87I CYCGRG 2 cut(s) 212, 444
AseI ATTAAT 1 cut(s) 6
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 212, 444
BbsI GAAGAC 1 cut(s) 445
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 282
BmcAI AGTACT 1 cut(s) 383
BmeT110I CYCGRG 2 cut(s) 212, 444
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 445
BpuEI CTTGAG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 41, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 41, 443
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 99
BsgI GTGCAG 2 cut(s) 140, 383
BsiHKCI CYCGRG 2 cut(s) 212, 444
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 240
BsmI GAATGC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 212, 444
Bsp143I GATC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 292
BssECI CCNNGG 2 cut(s) 41, 443
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 152, 358
CfoI GCGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 382
CviAII CATG 1 cut(s) 325
CviJI RGCY 2 cut(s) 53, 312
CviKI_1 RGCY 2 cut(s) 53, 312
CviQI GTAC 1 cut(s) 382
DdeI CTNAG 1 cut(s) 85
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco88I CYCGRG 2 cut(s) 212, 444
FaeI CATG 1 cut(s) 328
FaiI YATR 9 cut(s) 162, 174, 293, 302, 322, 326, 334, 378, 395
FatI CATG 1 cut(s) 324
FspBI CTAG 1 cut(s) 282
FspI TGCGCA 1 cut(s) 221
GlaI GCGC 1 cut(s) 221
HhaI GCGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 227, 435
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 2 cut(s) 157, 364
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 147, 437
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 282
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 2 cut(s) 439, 450
MluCI AATT 3 cut(s) 55, 95, 244
MnlI CCTC 3 cut(s) 36, 290, 453
MseI TTAA 2 cut(s) 6, 140
MslI CAYNNNNRTG 2 cut(s) 162, 323
Mva1269I GAATGC 1 cut(s) 222
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 221
PctI GAATGC 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 6
RsaI GTAC 1 cut(s) 383
RsaNI GTAC 1 cut(s) 382
RseI CAYNNNNRTG 2 cut(s) 162, 323
SaqAI TTAA 2 cut(s) 6, 140
Sau3AI GATC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 383
SetI ASST 4 cut(s) 47, 204, 314, 445
SfaNI GCATC 1 cut(s) 54
SmiMI CAYNNNNRTG 2 cut(s) 162, 323
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 3 cut(s) 55, 95, 244
SspMI CTAG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 307
TasI AATT 3 cut(s) 55, 95, 244
TatI WGTACW 1 cut(s) 381
Tru1I TTAA 2 cut(s) 6, 140
Tru9I TTAA 2 cut(s) 6, 140
TscAI CASTG 2 cut(s) 159, 358
TspDTI ATGAA 2 cut(s) 64, 262
TspRI CASTG 2 cut(s) 159, 358
VspI ATTAAT 1 cut(s) 6
XspI CTAG 1 cut(s) 282
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.