Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Reverse (-)

13735964 .. 13739127

Gene Structure 3164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGGCCAATATTTTGCGGCAACTTGGATTTTGATGCGCGGCAGTCAGATGTTGAGCGGCTTTTCAAGCGATATGGGAAAGTTGAGAGGGTGGATATTAAGTCTGGATTTGCTTTTGTCTATATGGACGACGAACGAGATGCTGAGTATGCAATTCGAAGACTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGGCTTCGTATTGAGTGGACCAAGCATGAAAGAGGGATTAGGAGACCTGATTCAAGAAGGCCTTCAGCTAACACAAAGCCCTCAAAAACCTTGTTTGTTATCAACTTTGATCGAGTCCATACCAGGACAAAGGATCTGGAGAGGCACTTTGATCCCTACGGGAAAATTACAAACGTAAGGATTAGAAGGAATTTTGCTTTCATTCAATATGAATCACAGGAGGATGCTACCAAAGCTTTGGAGGCAACAAATACAAGCAAGTTCATGGATAGGGTTATTTCTGTGGAATACGCTGCTCGTGATGATGATGATAAAAGAAATGGGCAGAGTCCTGACAGGAGGGGCCGTGATATGTCTCCTGAGAGAAGAGGCAATGATCGTGGGCGATCTCCAAGTCCGTACCGCAGAGATAGGGGAAGCCCTGATTATGGCCATGGTGCCCGTGTAAGTTCTAGAACTGAATCAAGAAGAAGTCCTGATTATGAGAGAGCTGCAAGCCCATCAATGATAGATCTCGTCCAAGTTCTAGACCTGAACCAAGAAGTCCCAGTGATGAGGGAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 RrnaAD

Protein Analysis

254

Amino Acids

29.81

Weight (kDa)

9.94

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	40
AciI	CCGC	4 cut(s)	18, 40, 58, 598
AclWI	GGATC	2 cut(s)	336, 341
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	176, 385
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	67, 249, 401
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	263, 431, 686, 757
AluI	AGCT	4 cut(s)	263, 431, 686, 757
Alw26I	GTCTC	2 cut(s)	232, 555
AlwI	GGATC	2 cut(s)	336, 341
AoxI	GGCC	4 cut(s)	5, 254, 538, 625
ApeKI	GCWGC	2 cut(s)	488, 686
ApoI	RAATTY	2 cut(s)	176, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	213, 538
AsuII	TTCGAA	1 cut(s)	157
AvaII	GGWCC	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	632
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	475, 673
BccI	CCATC	1 cut(s)	703
BceAI	ACGGC	1 cut(s)	525
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	232, 555
BfaI	CTAG	2 cut(s)	648, 722
BglII	AGATCT	1 cut(s)	706
BisI	GCNGC	5 cut(s)	19, 41, 59, 489, 687
BlsI	GCNGC	5 cut(s)	20, 42, 60, 490, 688
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	213, 538
BmiI	GGNNCC	2 cut(s)	539, 634
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	3 cut(s)	25, 130, 409
BmuI	ACTGGG	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	353
Bpu14I	TTCGAA	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	743
Bse3DI	GCAATG	1 cut(s)	574
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	2 cut(s)	135, 546
BseNI	ACTGG	1 cut(s)	743
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	2 cut(s)	475, 673
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	7, 256, 540, 627
BshNI	GGYRCC	1 cut(s)	632
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	204, 725
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	232, 555
BsmFI	GGGAC	2 cut(s)	204, 725
BsnI	GGCC	4 cut(s)	7, 256, 540, 627
Bso31I	GGTCTC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	4 cut(s)	18, 40, 58, 598
BspANI	GGCC	4 cut(s)	7, 256, 540, 627
BspCNI	CTCAG	2 cut(s)	136, 547
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	539, 634
BspPI	GGATC	2 cut(s)	336, 341
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	743
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
BssNI	GRCGYC	1 cut(s)	193
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	628
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	556
BstACI	GRCGYC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	197, 691
BstDEI	CTNAG	2 cut(s)	144, 555
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	6 cut(s)	307, 331, 349, 574, 584, 709
BstMAI	GTCTC	2 cut(s)	232, 555
BstMBI	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	637
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	475, 673
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	328, 706
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	2 cut(s)	328, 706
BsuRI	GGCC	4 cut(s)	7, 256, 540, 627
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	2 cut(s)	197, 691
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	213, 538
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	595
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	3 cut(s)	221, 460, 629
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	2 cut(s)	144, 555
DpnI	GATC	6 cut(s)	306, 330, 348, 573, 583, 708
DpnII	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	3 cut(s)	224, 463, 632
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	2 cut(s)	204, 725
FatI	CATG	3 cut(s)	220, 459, 628
Fnu4HI	GCNGC	5 cut(s)	19, 41, 59, 489, 687
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	5 cut(s)	19, 41, 59, 489, 687
FspBI	CTAG	2 cut(s)	648, 722
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	19, 41, 59, 489, 687
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	7, 256, 540, 627
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	224, 463, 632
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	5 cut(s)	245, 309, 407, 523, 656
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	181, 246, 267, 375
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	2 cut(s)	152, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
HpyF3I	CTNAG	2 cut(s)	144, 555
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	224, 463, 632
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Kzo9I	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	2 cut(s)	475, 673
LweI	GCATC	3 cut(s)	25, 130, 409
MaeI	CTAG	2 cut(s)	648, 722
MaeII	ACGT	1 cut(s)	369
MalI	GATC	6 cut(s)	306, 330, 348, 573, 583, 708
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
MboII	GAAGA	3 cut(s)	171, 573, 675
MflI	RGATCY	2 cut(s)	328, 706
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	4 cut(s)	153, 176, 360, 385
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	2 cut(s)	318, 532
MnlI	CCTC	9 cut(s)	81, 221, 286, 330, 409, 430, 528, 557, 744
Mox20I	TGGCCA	1 cut(s)	627
MroNI	GCCGGC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	627
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
NaeI	GCCGGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	224, 463, 632
NlaIV	GGNNCC	2 cut(s)	539, 634
NspV	TTCGAA	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	245, 407, 656
PkrI	GCNGC	5 cut(s)	20, 42, 60, 490, 688
PleI	GAGTC	2 cut(s)	317, 531
PpsI	GAGTC	2 cut(s)	317, 531
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	539, 634
PspPI	GGNCC	2 cut(s)	213, 538
PsuI	RGATCY	2 cut(s)	328, 706
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	5 cut(s)	19, 41, 59, 489, 687
Sau3AI	GATC	6 cut(s)	304, 328, 346, 571, 581, 706
Sau96I	GGNCC	2 cut(s)	213, 538
SchI	GAGTC	2 cut(s)	318, 532
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	637
SetI	ASST	8 cut(s)	244, 265, 287, 372, 433, 688, 729, 759
SfaNI	GCATC	3 cut(s)	25, 130, 409
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	153, 176, 360, 385
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	4 cut(s)	18, 40, 58, 598
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	2 cut(s)	648, 722
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	628
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	157, 307
TasI	AATT	4 cut(s)	153, 176, 360, 385
TauI	GCSGC	3 cut(s)	21, 43, 61
TfiI	GAWTC	3 cut(s)	245, 407, 656
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	2 cut(s)	488, 686
TspDTI	ATGAA	4 cut(s)	237, 385, 420, 448
TspGWI	ACGGA	1 cut(s)	582
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	176, 385
XbaI	TCTAGA	2 cut(s)	647, 721
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	2 cut(s)	648, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.