RLG00000026578

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
4007676 .. 4010376
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026578

Sequence Viewer

Length: 1038 bp
ATGAAGGCTGGTTTTGCATTCATTTACATGGATGACGAGAGAGATGCTGACTATGCAATACGGGGACTTGATCGGAGAGAATTTGGTCGAAAAGGGCGCAGGCTTCGTGTTGAATGGTCAAAGGTATCCAGTCATGAGCGTGGTTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTAATACAAGACCGTCAAAGACCTTGTTTGTTATAAATTTTGATCCGTATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAATTTCGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGACGCTACAAACATGAGCAAGCTGATGGACCGAGTTATATCGGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTGTAGCCCTGACAGGAGAAGTCGTGATAGGTCACTAGAGAGAGGCCGTGACAGAAGAAGAACCCCAAGTCCCTACAAAAGAGAGAGGGGAAGCCCTGATTATGGCCGTGGCCCTAGCCCTGGTCCATACCGGAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAGAGAGCAAGCCCTGACTATGCCCGTGGGCGCAGCCCGAGTCCTTACAGGAGGGAGAGATCTGATCGTGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGTTGATCATGGCCGTGATCGCAGCCGCAGCCGTAGTCCCTATGTTGGAAGAGATAGGGCTGTTGCTGAAAATGGCCATGCTCCAAGTCCTAGTCCTCCTCCTTACAAGAGAGCTAGAGTTAGCCCTGAAAATGGTCATGGTCCCAGCAGTAGCCCTTATGAAGGAGAGAGGGCCAACAGCCCTGAAGAAGGTCGTATTCCAAGTCCCAACTCTGTGCCCGATGGCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGCCGTTCACCCCAAGCTGAGGAGGAATGA

Protein Analysis

346

Amino Acids

39.69

Weight (kDa)

10.33

Isoelectric Point (pI)

85.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 68 - 130 3.9e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AciI CCGC 1 cut(s) 754
AclWI GGATC 4 cut(s) 215, 257, 286, 299
AcoI YGGCCR 3 cut(s) 538, 739, 802
AcsI RAATTY 3 cut(s) 80, 214, 301
AcuI CTGAAG 1 cut(s) 933
AfiI CCNNNNNNNGG 9 cut(s) 536, 554, 590, 773, 860, 890, 917, 971, 1027
AgsI TTSAA 4 cut(s) 113, 165, 177, 398
AjiI CACGTC 1 cut(s) 596
AjnI CCWGG 3 cut(s) 154, 233, 553
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AluBI AGCT 3 cut(s) 373, 842, 1025
AluI AGCT 3 cut(s) 373, 842, 1025
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 4 cut(s) 215, 257, 286, 299
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 7 cut(s) 478, 538, 544, 739, 802, 900, 977
ApeKI GCWGC 3 cut(s) 651, 750, 756
ApoI RAATTY 3 cut(s) 80, 214, 301
ArsI GACNNNNNNTTYG 2 cut(s) 229, 261
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 2 cut(s) 99, 651
AspS9I GGNCC 7 cut(s) 237, 379, 545, 557, 869, 900, 977
AsuHPI GGTGA 2 cut(s) 736, 1008
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 4 cut(s) 237, 379, 557, 869
BaeGI GKGCMC 2 cut(s) 349, 948
BalI TGGCCA 1 cut(s) 804
BamHI GGATCC 1 cut(s) 291
BbsI GAAGAC 2 cut(s) 157, 165
BbvCI CCTCAGC 1 cut(s) 1026
BbvI GCAGC 3 cut(s) 663, 762, 768
BccI CCATC 3 cut(s) 370, 425, 944
BceAI ACGGC 5 cut(s) 465, 525, 726, 744, 996
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 3 cut(s) 156, 235, 555
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 6 cut(s) 147, 342, 470, 549, 819, 843
BfmI CTRYAG 1 cut(s) 436
BfuI GTATCC 1 cut(s) 136
BglII AGATCT 1 cut(s) 677
BisI GCNGC 4 cut(s) 652, 751, 754, 757
BlsI GCNGC 4 cut(s) 653, 752, 755, 758
Bme1390I CCNGG 3 cut(s) 156, 235, 555
Bme18I GGWCC 4 cut(s) 237, 379, 557, 869
BmeT110I CYCGRG 1 cut(s) 655
BmgBI CACGTC 1 cut(s) 596
BmgT120I GGNCC 7 cut(s) 237, 379, 545, 557, 869, 900, 977
BmiI GGNNCC 2 cut(s) 293, 871
BmrFI CCNGG 3 cut(s) 156, 235, 555
BmsI GCATC 2 cut(s) 34, 325
BpiI GAAGAC 2 cut(s) 157, 165
BpmI CTGGAG 1 cut(s) 682
Bpu10I CCTNAGC 1 cut(s) 1026
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 4 cut(s) 240, 541, 553, 643
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 9 cut(s) 536, 554, 590, 773, 860, 890, 917, 971, 1027
Bse1I ACTGG 3 cut(s) 129, 354, 699
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 3 cut(s) 156, 235, 555
BseDI CCNNGG 4 cut(s) 240, 541, 553, 643
BseGI GGATG 2 cut(s) 37, 340
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 9 cut(s) 536, 554, 590, 773, 860, 890, 917, 971, 1027
BseMII CTCAG 1 cut(s) 1017
BseNI ACTGG 3 cut(s) 129, 354, 699
BseRI GAGGAG 1 cut(s) 816
BseSI GKGCMC 2 cut(s) 349, 948
BseXI GCAGC 3 cut(s) 663, 762, 768
BseYI CCCAGC 1 cut(s) 872
BshFI GGCC 7 cut(s) 480, 540, 546, 741, 804, 902, 979
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 6 cut(s) 78, 489, 693, 750, 855, 918
BslI CCNNNNNNNGG 9 cut(s) 536, 554, 590, 773, 860, 890, 917, 971, 1027
BsmAI GTCTC 1 cut(s) 700
BsmFI GGGAC 6 cut(s) 78, 489, 693, 750, 855, 918
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 7 cut(s) 480, 540, 546, 741, 804, 902, 979
Bso31I GGTCTC 1 cut(s) 700
BsoBI CYCGRG 1 cut(s) 655
Bsp1286I GDGCHC 2 cut(s) 349, 948
Bsp143I GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
BspACI CCGC 1 cut(s) 754
BspANI GGCC 7 cut(s) 480, 540, 546, 741, 804, 902, 979
BspCNI CTCAG 1 cut(s) 1018
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 293, 871
BspPI GGATC 4 cut(s) 215, 257, 286, 299
BspTNI GGTCTC 1 cut(s) 700
BsrI ACTGG 3 cut(s) 129, 354, 699
BssECI CCNNGG 4 cut(s) 240, 541, 553, 643
BssMI GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 3 cut(s) 156, 235, 555
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 2 cut(s) 421, 772
BstC8I GCNNGC 3 cut(s) 101, 371, 628
BstDEI CTNAG 1 cut(s) 1026
BstDSI CCRYGG 2 cut(s) 541, 643
BstENI CCTNNNNNAGG 2 cut(s) 888, 915
BstF5I GGATG 2 cut(s) 37, 340
BstHHI GCGC 2 cut(s) 99, 651
BstKTI GATC 8 cut(s) 73, 223, 265, 294, 680, 685, 736, 748
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
BstMWI GCNNNNNNNGC 7 cut(s) 14, 53, 344, 353, 747, 756, 960
BstNI CCWGG 3 cut(s) 156, 235, 555
BstSCI CCNGG 3 cut(s) 154, 233, 553
BstSFI CTRYAG 1 cut(s) 436
BstSLI GKGCMC 2 cut(s) 349, 948
BstV1I GCAGC 3 cut(s) 663, 762, 768
BstV2I GAAGAC 2 cut(s) 157, 165
BstX2I RGATCY 2 cut(s) 291, 677
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 2 cut(s) 291, 677
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 7 cut(s) 480, 540, 546, 741, 804, 902, 979
BtgI CCRYGG 2 cut(s) 541, 643
BtrI CACGTC 1 cut(s) 596
BtsCI GGATG 2 cut(s) 37, 340
BtsIMutI CAGTG 1 cut(s) 347
Cac8I GCNNGC 3 cut(s) 101, 371, 628
CciI TCATGA 1 cut(s) 133
CfoI GCGC 2 cut(s) 99, 651
Cfr13I GGNCC 7 cut(s) 237, 379, 545, 557, 869, 900, 977
CseI GACGC 1 cut(s) 362
CsiI ACCWGGT 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 955, 990
CviAII CATG 8 cut(s) 28, 134, 364, 737, 806, 866, 991, 995
DdeI CTNAG 1 cut(s) 1026
DpnI GATC 8 cut(s) 72, 222, 264, 293, 679, 684, 735, 747
DpnII GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
EaeI YGGCCR 3 cut(s) 538, 739, 802
Eam1104I CTCTTC 2 cut(s) 421, 772
EarI CTCTTC 2 cut(s) 421, 772
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 4 cut(s) 237, 379, 557, 869
Eco57I CTGAAG 1 cut(s) 933
Eco88I CYCGRG 1 cut(s) 655
EcoNI CCTNNNNNAGG 2 cut(s) 888, 915
EcoRII CCWGG 3 cut(s) 154, 233, 553
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 996
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 8 cut(s) 31, 137, 367, 740, 809, 869, 994, 998
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 6 cut(s) 78, 489, 693, 750, 855, 918
FatI CATG 8 cut(s) 27, 133, 363, 736, 805, 865, 990, 994
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 4 cut(s) 652, 751, 754, 757
FokI GGATG 2 cut(s) 44, 347
Fsp4HI GCNGC 4 cut(s) 652, 751, 754, 757
FspBI CTAG 6 cut(s) 147, 342, 470, 549, 819, 843
GlaI GCGC 2 cut(s) 98, 650
GluI GCNGC 4 cut(s) 652, 751, 754, 757
GsaI CCCAGC 1 cut(s) 876
GsuI CTGGAG 1 cut(s) 682
HaeIII GGCC 7 cut(s) 480, 540, 546, 741, 804, 902, 979
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 99, 651
Hin1II CATG 8 cut(s) 31, 137, 367, 740, 809, 869, 994, 998
Hin6I GCGC 2 cut(s) 97, 649
HinP1I GCGC 2 cut(s) 97, 649
HinfI GANTC 2 cut(s) 323, 658
HpaII CCGG 1 cut(s) 565
HphI GGTGA 2 cut(s) 736, 1008
Hpy166II GTNNAC 1 cut(s) 1016
Hpy188I TCNGA 3 cut(s) 75, 296, 682
Hpy188III TCNNGA 6 cut(s) 134, 147, 165, 410, 458, 584
Hpy8I GTNNAC 1 cut(s) 1016
HpyAV CCTTC 5 cut(s) 162, 291, 609, 884, 911
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 17, 56, 404, 994
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 53, 344, 353, 747, 756, 960
HpyF3I CTNAG 1 cut(s) 1026
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 8 cut(s) 31, 137, 367, 740, 809, 869, 994, 998
HspAI GCGC 2 cut(s) 97, 649
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
LmnI GCTCC 1 cut(s) 814
Lsp1109I GCAGC 3 cut(s) 663, 762, 768
LweI GCATC 2 cut(s) 34, 325
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 6 cut(s) 147, 342, 470, 549, 819, 843
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 3 cut(s) 324, 465, 482
MalI GATC 8 cut(s) 72, 222, 264, 293, 679, 684, 735, 747
MboI GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
MboII GAAGA 7 cut(s) 162, 165, 438, 501, 504, 789, 926
MflI RGATCY 2 cut(s) 291, 677
MhlI GDGCHC 2 cut(s) 349, 948
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 4 cut(s) 80, 214, 301, 967
MluNI TGGCCA 1 cut(s) 804
MlyI GAGTC 2 cut(s) 332, 667
MmeI TCCRAC 1 cut(s) 754
Mox20I TGGCCA 1 cut(s) 804
Mph1103I ATGCAT 1 cut(s) 996
MroXI GAANNNNTTC 1 cut(s) 172
MscI TGGCCA 1 cut(s) 804
MslI CAYNNNNRTG 3 cut(s) 26, 138, 741
Msp20I TGGCCA 1 cut(s) 804
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 3 cut(s) 156, 235, 555
Mva1269I GAATGC 1 cut(s) 17
MvaI CCWGG 3 cut(s) 156, 235, 555
MwoI GCNNNNNNNGC 7 cut(s) 14, 53, 344, 353, 747, 756, 960
NdeI CATATG 1 cut(s) 268
NdeII GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
NlaIII CATG 8 cut(s) 31, 137, 367, 740, 809, 869, 994, 998
NlaIV GGNNCC 2 cut(s) 293, 871
NmuCI GTSAC 3 cut(s) 324, 465, 482
NsiI ATGCAT 1 cut(s) 996
PagI TCATGA 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 172
PkrI GCNGC 4 cut(s) 653, 752, 755, 758
PleI GAGTC 2 cut(s) 331, 666
PpsI GAGTC 2 cut(s) 331, 666
PsiI TTATAA 1 cut(s) 212
Psp6I CCWGG 3 cut(s) 154, 233, 553
PspFI CCCAGC 1 cut(s) 872
PspGI CCWGG 3 cut(s) 154, 233, 553
PspN4I GGNNCC 2 cut(s) 293, 871
PspPI GGNCC 7 cut(s) 237, 379, 545, 557, 869, 900, 977
PsuI RGATCY 2 cut(s) 291, 677
RseI CAYNNNNRTG 3 cut(s) 26, 138, 741
SatI GCNGC 4 cut(s) 652, 751, 754, 757
Sau3AI GATC 8 cut(s) 70, 220, 262, 291, 677, 682, 733, 745
Sau96I GGNCC 7 cut(s) 237, 379, 545, 557, 869, 900, 977
SchI GAGTC 2 cut(s) 332, 667
ScrFI CCNGG 3 cut(s) 156, 235, 555
SduI GDGCHC 2 cut(s) 349, 948
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 2 cut(s) 34, 325
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 4 cut(s) 237, 379, 557, 869
SmiMI CAYNNNNRTG 3 cut(s) 26, 138, 741
Sse9I AATT 4 cut(s) 80, 214, 301, 967
SsiI CCGC 1 cut(s) 754
SspMI CTAG 6 cut(s) 147, 342, 470, 549, 819, 843
StyD4I CCNGG 3 cut(s) 154, 233, 553
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 192
TaiI ACGT 1 cut(s) 598
TaqI TCGA 1 cut(s) 88
TaqII GACCGA 1 cut(s) 396
TasI AATT 4 cut(s) 80, 214, 301, 967
TauI GCSGC 1 cut(s) 756
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 3 cut(s) 324, 465, 482
TseI GCWGC 3 cut(s) 651, 750, 756
Tsp45I GTSAC 3 cut(s) 324, 465, 482
TspDTI ATGAA 4 cut(s) 10, 17, 435, 903
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 354
VpaK11BI GGWCC 4 cut(s) 237, 379, 557, 869
XagI CCTNNNNNAGG 2 cut(s) 888, 915
XapI RAATTY 3 cut(s) 80, 214, 301
XbaI TCTAGA 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 6 cut(s) 147, 342, 470, 549, 819, 843
Zsp2I ATGCAT 1 cut(s) 996
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.