Rh1BG211800

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000932
Physical Location & Seq
Forward (+)
33072119 .. 33076477
4359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG211800.1

Sequence Viewer

Length: 657 bp
ATGGATGATGAGCGAGATGCTGAGTATGCAATTCGAAAGCTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGTCTTCGTATTGAGTGGACCAAGCATGAACGCGGGATTAGGAGATCTGATGATTCAAAAAAACCACCAGCGAACACAAAGCCCTCAAAAACCCTGTTTGTTATCAATTTTGATCCTATCCATACCAGGACAAGGGATCTGGAGAAGCACTTTGATCTATATGGGAAAATAACGAACATAAGGATTAGAAGAAATTTTGCATTTATTCAATATGAATCACAGGAGGATGCTACCAAAGCATTGGATGCAACAAATTCAAGCAAGTTCATGGACCGCGTTATTTCAGTGGAGTATGCTGTTCGTGATGATGATGATAGAAGAAATGGTCACAGTCCTGATAGAAGGGGCCGTGATACGTCTCCTGAGAGGAGAAGAAGCAATGATTGTGGGCGATCTCCAAGTCCATACCGCAGAGATAGGGCTAGTCCGGATTATGGCCATGGTTCCCGTCAGAATTCTAGAGCTGAACCAAGAAGAAGTCCTGAGTATGATAGAGCTCCAAGAAGAAGTCCTGATTATGAGAGAGCCGCAAGCCCAGTCAATGATAGATACCACAGGTTTGACAAAGATCTGAACTTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 RrnaAD

Protein Analysis

218

Amino Acids

25.95

Weight (kDa)

9.94

Isoelectric Point (pI)

72.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 56 - 118 8.3e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 105, 348
AccIII TCCGGA 1 cut(s) 499
AciI CCGC 4 cut(s) 105, 346, 481, 600
AclWI GGATC 2 cut(s) 179, 216
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 4 cut(s) 53, 265, 325, 526
AcyI GRCGYC 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 204, 506
AgsI TTSAA 3 cut(s) 129, 281, 330
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 40, 536, 569
AluI AGCT 3 cut(s) 40, 536, 569
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 2 cut(s) 179, 216
Aor13HI TCCGGA 1 cut(s) 499
AoxI GGCC 2 cut(s) 418, 508
ApoI RAATTY 4 cut(s) 53, 265, 325, 526
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
AspS9I GGNCC 3 cut(s) 90, 343, 418
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 90, 343
BalI TGGCCA 1 cut(s) 510
BanII GRGCYC 1 cut(s) 571
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 571
BceAI ACGGC 2 cut(s) 57, 405
BciT130I CCWGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 2 cut(s) 495, 531
BglII AGATCT 2 cut(s) 116, 640
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 2 cut(s) 90, 343
BmgT120I GGNCC 3 cut(s) 90, 343, 418
BmiI GGNNCC 2 cut(s) 419, 517
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 3 cut(s) 7, 289, 307
BmuI ACTGGG 1 cut(s) 602
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 233
Bpu14I TTCGAA 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 499
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 506
Bse1I ACTGG 1 cut(s) 608
Bse3DI GCAATG 1 cut(s) 457
BseAI TCCGGA 1 cut(s) 499
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 511
BseGI GGATG 3 cut(s) 10, 304, 322
BseLI CCNNNNNNNGG 2 cut(s) 204, 506
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 3 cut(s) 12, 426, 546
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 105, 348
BshFI GGCC 2 cut(s) 420, 510
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 204, 506
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 2 cut(s) 420, 510
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 571
Bsp13I TCCGGA 1 cut(s) 499
Bsp143I GATC 6 cut(s) 116, 184, 208, 226, 464, 640
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 4 cut(s) 105, 346, 481, 600
BspANI GGCC 2 cut(s) 420, 510
BspCNI CTCAG 3 cut(s) 13, 427, 547
BspEI TCCGGA 1 cut(s) 499
BspFNI CGCG 2 cut(s) 105, 348
BspLI GGNNCC 2 cut(s) 419, 517
BspPI GGATC 2 cut(s) 179, 216
BspT104I TTCGAA 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 457
BsrI ACTGG 1 cut(s) 608
BssECI CCNNGG 1 cut(s) 511
BssMI GATC 6 cut(s) 116, 184, 208, 226, 464, 640
BssNI GRCGYC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 511
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 3 cut(s) 21, 435, 555
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 3 cut(s) 10, 304, 322
BstFNI CGCG 2 cut(s) 105, 348
BstKTI GATC 6 cut(s) 119, 187, 211, 229, 467, 643
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 6 cut(s) 116, 184, 208, 226, 464, 640
BstMWI GCNNNNNNNGC 3 cut(s) 26, 308, 317
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 197
BstUI CGCG 2 cut(s) 105, 348
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 3 cut(s) 116, 208, 640
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 3 cut(s) 116, 208, 640
BsuRI GGCC 2 cut(s) 420, 510
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 3 cut(s) 10, 304, 322
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 604
Cfr13I GGNCC 3 cut(s) 90, 343, 418
CseI GACGC 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 3 cut(s) 98, 340, 512
CviJI RGCY 9 cut(s) 40, 154, 420, 494, 510, 536, 569, 599, 606
CviKI_1 RGCY 9 cut(s) 40, 154, 420, 494, 510, 536, 569, 599, 606
DdeI CTNAG 3 cut(s) 21, 435, 555
DpnI GATC 6 cut(s) 118, 186, 210, 228, 466, 642
DpnII GATC 6 cut(s) 116, 184, 208, 226, 464, 640
EaeI YGGCCR 1 cut(s) 508
Ecl136II GAGCTC 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 90, 343
Eco53kI GAGCTC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 511
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 3 cut(s) 101, 343, 515
FaqI GGGAC 1 cut(s) 81
FatI CATG 3 cut(s) 97, 339, 511
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 3 cut(s) 17, 311, 329
FriOI GRGCYC 1 cut(s) 571
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 2 cut(s) 495, 531
GluI GCNGC 1 cut(s) 600
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 420, 510
HapII CCGG 1 cut(s) 500
HgaI GACGC 1 cut(s) 78
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 3 cut(s) 101, 343, 515
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 125, 287
HpaII CCGG 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 121, 525, 645
Hpy188III TCNNGA 8 cut(s) 212, 374, 407, 434, 500, 531, 554, 584
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 58, 408
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 29, 272, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 308, 317
HpyF3I CTNAG 3 cut(s) 21, 435, 555
HpySE526I ACGT 1 cut(s) 428
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 3 cut(s) 101, 343, 515
Kpn2I TCCGGA 1 cut(s) 499
Kzo9I GATC 6 cut(s) 116, 184, 208, 226, 464, 640
LmnI GCTCC 1 cut(s) 574
LweI GCATC 3 cut(s) 7, 289, 307
MaeI CTAG 2 cut(s) 495, 531
MaeII ACGT 1 cut(s) 428
MaeIII GTNAC 1 cut(s) 398
MalI GATC 6 cut(s) 118, 186, 210, 228, 466, 642
MboI GATC 6 cut(s) 116, 184, 208, 226, 464, 640
MboII GAAGA 6 cut(s) 68, 273, 402, 456, 558, 588
MflI RGATCY 3 cut(s) 116, 208, 640
MhlI GDGCHC 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 6 cut(s) 30, 53, 178, 265, 325, 526
MluNI TGGCCA 1 cut(s) 510
MnlI CCTC 3 cut(s) 166, 289, 432
Mox20I TGGCCA 1 cut(s) 510
MroI TCCGGA 1 cut(s) 499
MscI TGGCCA 1 cut(s) 510
MseI TTAA 1 cut(s) 655
Msp20I TGGCCA 1 cut(s) 510
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 2 cut(s) 105, 348
MwoI GCNNNNNNNGC 3 cut(s) 26, 308, 317
NcoI CCATGG 1 cut(s) 511
NdeII GATC 6 cut(s) 116, 184, 208, 226, 464, 640
NlaIII CATG 3 cut(s) 101, 343, 515
NlaIV GGNNCC 2 cut(s) 419, 517
NmuCI GTSAC 1 cut(s) 398
NspV TTCGAA 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 2 cut(s) 125, 287
PflFI GACNNNGTC 1 cut(s) 72
PkrI GCNGC 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 571
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 419, 517
PspPI GGNCC 3 cut(s) 90, 343, 418
PsuI RGATCY 3 cut(s) 116, 208, 640
PsyI GACNNNGTC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 571
SaqAI TTAA 1 cut(s) 655
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 6 cut(s) 116, 184, 208, 226, 464, 640
Sau96I GGNCC 3 cut(s) 90, 343, 418
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 571
SetI ASST 5 cut(s) 42, 431, 538, 571, 632
SfaNI GCATC 3 cut(s) 7, 289, 307
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 2 cut(s) 90, 343
Sse9I AATT 6 cut(s) 30, 53, 178, 265, 325, 526
SsiI CCGC 4 cut(s) 105, 346, 481, 600
SspMI CTAG 2 cut(s) 495, 531
SstI GAGCTC 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 431
TaqI TCGA 1 cut(s) 34
TasI AATT 6 cut(s) 30, 53, 178, 265, 325, 526
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 2 cut(s) 125, 287
Tru1I TTAA 1 cut(s) 655
Tru9I TTAA 1 cut(s) 655
TscAI CASTG 1 cut(s) 363
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 3 cut(s) 114, 300, 328
TspRI CASTG 1 cut(s) 363
Tth111I GACNNNGTC 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 90, 343
XapI RAATTY 4 cut(s) 53, 265, 325, 526
XbaI TCTAGA 1 cut(s) 530
XspI CTAG 2 cut(s) 495, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.