Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Reverse (-)

15532563 .. 15537396

Gene Structure 4834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1051400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGGCCAATATTTTGCGGCAACTTGGATTTTGACGCGCGGCAGTCAGATGTTGAGCGGCTTTTCAAGCGATATGGGAAAGTCGAGAGGGTGGATATTAAGTCTGGATTTGCTTTCGTCTATATGGATGACGAACGAGATGCTGAGTATGCAATTCGAAGACTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGACTTCGTATTGAGTGGACCAAGCATGAAAGAGGGATTAGGAGACCTGATTCAAGAAGACCTTCTGCTAACATGAAGCCCTCAAAAACCTTGTTTGTTATCAACTTTGATCCAGTCCATACCAGGACAAAGGATCTGGAGAGGCACTTTGATCCCTACGGGAAAATAACGAACATAAGGATTAGAAGGAATTTTGCTTTCATTCAATATGAATCACAGGAGGATGCTACCAAAGCTCTGGAGGCAACAAATACAAGCAAGTTCATGGACAGGGTTATTTCTGTGGAATATGCTGCTCGTGATGATGATGATGATAAAAGAAATGGGCACAGTCCTGACAGGAGGGGCCGTGATATGTCTCCTGAGAGAAGAAGCAATGATCGTGGGCGATCTCCAAGTCCATACCGCAGAGATAGGGGAAGCCCTGATTATGGCCATGGTGCCCGAGTAAGTTCTAGAACTGAATCAAGAAGAAGTCCTGATTATGAGAGAGCTGCAAGCCCAGTCAATGATAGATCCCGTCCAAGTTCTAGACCTGGACCTAGAAGAAGTCCCGATTATGAGAGATCTGCAAGCCCAGTCAATGATAGATCCCATCCAAGTTCTAGACCTGAACTAAGAAGAAGTCCCAGTGATGAGGGAGCTATAAGCCCCGTCAATGATGAATACCGCAGCCGTTCTCCCCCACCGCGGGAAAGATCTCGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 RrnaAD

Protein Analysis

302

Amino Acids

35.24

Weight (kDa)

10.27

Isoelectric Point (pI)

88.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 62	8.1e-15	RNA recognition motif
RRM_1	PF00076	96 - 158	1e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	3 cut(s)	38, 40, 886
AciI	CCGC	7 cut(s)	18, 40, 58, 601, 865, 884, 886
AclWI	GGATC	5 cut(s)	299, 336, 341, 705, 780
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	176, 385
AcyI	GRCGYC	1 cut(s)	193
AfiI	CCNNNNNNNGG	3 cut(s)	626, 885, 886
AgsI	TTSAA	3 cut(s)	67, 249, 401
AjnI	CCWGG	2 cut(s)	317, 730
AluBI	AGCT	3 cut(s)	431, 689, 839
AluI	AGCT	3 cut(s)	431, 689, 839
Alw26I	GTCTC	2 cut(s)	232, 558
AlwI	GGATC	5 cut(s)	299, 336, 341, 705, 780
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	5, 541, 628
ApeKI	GCWGC	3 cut(s)	488, 689, 867
ApoI	RAATTY	2 cut(s)	176, 385
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	213, 541, 734
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	2 cut(s)	213, 734
BaeGI	GKGCMC	2 cut(s)	525, 640
BalI	TGGCCA	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	2 cut(s)	166, 259
BbvI	GCAGC	3 cut(s)	475, 676, 879
BccI	CCATC	1 cut(s)	798
BceAI	ACGGC	2 cut(s)	528, 855
BcgI	CGANNNNNNTGC	2 cut(s)	122, 156
BciT130I	CCWGG	2 cut(s)	319, 732
BcoDI	GTCTC	2 cut(s)	232, 558
BfaI	CTAG	4 cut(s)	651, 726, 738, 801
BglII	AGATCT	2 cut(s)	761, 893
BisI	GCNGC	6 cut(s)	19, 41, 59, 489, 690, 868
BlsI	GCNGC	6 cut(s)	20, 42, 60, 490, 691, 869
Bme1390I	CCNGG	2 cut(s)	319, 732
Bme18I	GGWCC	2 cut(s)	213, 734
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	3 cut(s)	213, 541, 734
BmiI	GGNNCC	2 cut(s)	542, 637
BmrFI	CCNGG	2 cut(s)	319, 732
BmrI	ACTGGG	3 cut(s)	692, 767, 819
BmsI	GCATC	2 cut(s)	130, 409
BmuI	ACTGGG	3 cut(s)	692, 767, 819
BpiI	GAAGAC	2 cut(s)	166, 259
BpmI	CTGGAG	2 cut(s)	353, 455
Bpu14I	TTCGAA	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	2 cut(s)	631, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	626, 885, 886
Bse1I	ACTGG	4 cut(s)	308, 698, 773, 825
Bse3DI	GCAATG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	319, 732
BseDI	CCNNGG	2 cut(s)	631, 884
BseGI	GGATG	3 cut(s)	133, 424, 790
BseLI	CCNNNNNNNGG	3 cut(s)	626, 885, 886
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	2 cut(s)	135, 549
BseNI	ACTGG	4 cut(s)	308, 698, 773, 825
BseSI	GKGCMC	2 cut(s)	525, 640
BseXI	GCAGC	3 cut(s)	475, 676, 879
Bsh1236I	CGCG	3 cut(s)	38, 40, 886
BshFI	GGCC	3 cut(s)	7, 543, 630
BshNI	GGYRCC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	639
BslFI	GGGAC	3 cut(s)	204, 732, 807
BslI	CCNNNNNNNGG	3 cut(s)	626, 885, 886
BsmAI	GTCTC	2 cut(s)	232, 558
BsmFI	GGGAC	3 cut(s)	204, 732, 807
BsnI	GGCC	3 cut(s)	7, 543, 630
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	639
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	525, 640
Bsp143I	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	7 cut(s)	18, 40, 58, 601, 865, 884, 886
BspANI	GGCC	3 cut(s)	7, 543, 630
BspCNI	CTCAG	2 cut(s)	136, 550
BspFNI	CGCG	3 cut(s)	38, 40, 886
BspLI	GGNNCC	2 cut(s)	542, 637
BspPI	GGATC	5 cut(s)	299, 336, 341, 705, 780
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	577
BsrI	ACTGG	4 cut(s)	308, 698, 773, 825
BssECI	CCNNGG	2 cut(s)	631, 884
BssMI	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
BssNI	GRCGYC	1 cut(s)	193
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	319, 732
Bst4CI	ACNGT	1 cut(s)	527
BstACI	GRCGYC	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	694, 769
BstDEI	CTNAG	3 cut(s)	144, 558, 812
BstDSI	CCRYGG	2 cut(s)	631, 884
BstF5I	GGATG	3 cut(s)	133, 424, 790
BstFNI	CGCG	3 cut(s)	38, 40, 886
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	9 cut(s)	307, 331, 349, 577, 587, 713, 764, 788, 896
BstMAI	GTCTC	2 cut(s)	232, 558
BstMBI	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
BstNI	CCWGG	2 cut(s)	319, 732
BstSCI	CCNGG	2 cut(s)	317, 730
BstSLI	GKGCMC	2 cut(s)	525, 640
BstUI	CGCG	3 cut(s)	38, 40, 886
BstV1I	GCAGC	3 cut(s)	475, 676, 879
BstV2I	GAAGAC	2 cut(s)	166, 259
BstX2I	RGATCY	5 cut(s)	328, 710, 761, 785, 893
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	5 cut(s)	328, 710, 761, 785, 893
BsuRI	GGCC	3 cut(s)	7, 543, 630
BtgI	CCRYGG	2 cut(s)	631, 884
BtsCI	GGATG	3 cut(s)	133, 424, 790
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	2 cut(s)	694, 769
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	213, 541, 734
Cfr42I	CCGCGG	1 cut(s)	887
CseI	GACGC	2 cut(s)	44, 201
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	4 cut(s)	221, 268, 460, 632
DdeI	CTNAG	3 cut(s)	144, 558, 812
DpnI	GATC	9 cut(s)	306, 330, 348, 576, 586, 712, 763, 787, 895
DpnII	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
EaeI	YGGCCR	1 cut(s)	628
Eco130I	CCWWGG	1 cut(s)	631
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	213, 734
Eco88I	CYCGRG	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	317, 730
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
FaeI	CATG	4 cut(s)	224, 271, 463, 635
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	3 cut(s)	204, 732, 807
FatI	CATG	4 cut(s)	220, 267, 459, 631
FauI	CCCGC	1 cut(s)	879
Fnu4HI	GCNGC	6 cut(s)	19, 41, 59, 489, 690, 868
FokI	GGATG	3 cut(s)	140, 431, 777
Fsp4HI	GCNGC	6 cut(s)	19, 41, 59, 489, 690, 868
FspBI	CTAG	4 cut(s)	651, 726, 738, 801
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	19, 41, 59, 489, 690, 868
GsuI	CTGGAG	2 cut(s)	353, 455
HaeIII	GGCC	3 cut(s)	7, 543, 630
HgaI	GACGC	2 cut(s)	44, 201
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	4 cut(s)	224, 271, 463, 635
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	3 cut(s)	245, 407, 659
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	213
HpyAV	CCTTC	3 cut(s)	181, 267, 375
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	3 cut(s)	152, 692, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
HpyF3I	CTNAG	3 cut(s)	144, 558, 812
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	4 cut(s)	224, 271, 463, 635
HspAI	GCGC	1 cut(s)	38
KspI	CCGCGG	1 cut(s)	887
Kzo9I	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
LmnI	GCTCC	1 cut(s)	836
Lsp1109I	GCAGC	3 cut(s)	475, 676, 879
LweI	GCATC	2 cut(s)	130, 409
MaeI	CTAG	4 cut(s)	651, 726, 738, 801
MalI	GATC	9 cut(s)	306, 330, 348, 576, 586, 712, 763, 787, 895
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
MboII	GAAGA	6 cut(s)	171, 264, 576, 678, 753, 828
MflI	RGATCY	5 cut(s)	328, 710, 761, 785, 893
MhlI	GDGCHC	2 cut(s)	525, 640
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	3 cut(s)	153, 176, 385
MluNI	TGGCCA	1 cut(s)	630
MnlI	CCTC	8 cut(s)	81, 221, 286, 330, 409, 430, 531, 826
Mox20I	TGGCCA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	1 cut(s)	886
MspR9I	CCNGG	2 cut(s)	319, 732
MvaI	CCWGG	2 cut(s)	319, 732
MvnI	CGCG	3 cut(s)	38, 40, 886
MwoI	GCNNNNNNNGC	4 cut(s)	67, 149, 428, 437
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
NlaIII	CATG	4 cut(s)	224, 271, 463, 635
NlaIV	GGNNCC	2 cut(s)	542, 637
NspV	TTCGAA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	245, 407, 659
PkrI	GCNGC	6 cut(s)	20, 42, 60, 490, 691, 869
Psp6I	CCWGG	2 cut(s)	317, 730
PspGI	CCWGG	2 cut(s)	317, 730
PspN4I	GGNNCC	2 cut(s)	542, 637
PspPI	GGNCC	3 cut(s)	213, 541, 734
PsuI	RGATCY	5 cut(s)	328, 710, 761, 785, 893
SacII	CCGCGG	1 cut(s)	887
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	19, 41, 59, 489, 690, 868
Sau3AI	GATC	9 cut(s)	304, 328, 346, 574, 584, 710, 761, 785, 893
Sau96I	GGNCC	3 cut(s)	213, 541, 734
ScrFI	CCNGG	2 cut(s)	319, 732
SduI	GDGCHC	2 cut(s)	525, 640
SetI	ASST	9 cut(s)	244, 259, 287, 433, 691, 733, 739, 808, 841
SfaNI	GCATC	2 cut(s)	130, 409
Sfr303I	CCGCGG	1 cut(s)	887
SfuI	TTCGAA	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	887
SinI	GGWCC	2 cut(s)	213, 734
Sse9I	AATT	3 cut(s)	153, 176, 385
SsiI	CCGC	7 cut(s)	18, 40, 58, 601, 865, 884, 886
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	4 cut(s)	651, 726, 738, 801
StyD4I	CCNGG	2 cut(s)	317, 730
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	2 cut(s)	84, 157
TasI	AATT	3 cut(s)	153, 176, 385
TauI	GCSGC	3 cut(s)	21, 43, 61
TfiI	GAWTC	3 cut(s)	245, 407, 659
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	832
TseI	GCWGC	3 cut(s)	488, 689, 867
TspDTI	ATGAA	6 cut(s)	237, 284, 385, 420, 448, 873
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	213, 734
XapI	RAATTY	2 cut(s)	176, 385
XbaI	TCTAGA	3 cut(s)	650, 725, 800
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	4 cut(s)	651, 726, 738, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.