Rorug01G0226600

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000932
Physical Location & Seq
Forward (+)
32616962 .. 32623494
6533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0226600.1

Sequence Viewer

Length: 1026 bp
ATGGCGAAGCCAGTGGCTGATTGGCAGAGCAATAAGGAAGCAGTTCAGGCCACAAACGACGACGCTTCCGCCAGCAAACTGTCCTGTGTGAAAAAGGGTTACATGAAAGATGATTATGTCCATTTATTTGTGAGAAGACCTGTCAGAAGATCACCCATTATTAACCGCGGTTACTTTGCCCGCTGGGCTGCGCTTCGCAAGCTTATGAATCAGTTTCTTGATACTGAAGTCCGCGAAAAGGGTGGGTTGAAGAAGCAGATACTATCACTTGGAGCTGGCTTTGATACCACATATTTCCAGTTGCAGGATGAAGGGAGAGCACCATATTTATATGTGGAGTTGGATTTTAAGGAGGTTACTAGAAAGAAGGCAACAATTATTGAAACCTGCAGTCAAATGAGGGACAAAATTAGTGCAACAGCATCAATATCTCGAGAGAGAGGAGAAGTGCTCAGTGACTGCTATAAGCTACTTCCAGTTGATTTGCGCGACATACATCAATTAAACGAGGTCATAGCTTTGGCTGGTATGGATCCCAGCCTGCCAACTTTTATAATTGCAGAATGCGTTTTGATATACATTGATCCAGAATCTAGTCGTGCCATAGTTGGCTGGGCATCAAAAACATTTTCAACAGCAATTTTTTTCTTATATGAGCAGATTCATCCAGATGATGCTTTTGGGCAGCAGATGATCAGAAACTTGGAGAGTCGAGGTTGTTCGCTCTTGGGAATACATGATACGCCAACATTGCAGGCAAAGGAAAGACTTTTTCTTGATCGAGGATGGCAGAGAGCTGTTGCCTGGGACATGCTGAGAGTATATAGTAGTTTTGTTGAAGCTCAAGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAATTTGAAGAATGGCACATGATGCAGGAGCACTACTGTGTGGCTTATGCAATCAATGATGCCATGAATCTTTTTGAGGATTTCGGCTTCCCTAAAGAGCAGCAGAAGCACGAGCCCATCCCCTCCTCATCAGCATCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 RrnaAD

Protein Analysis

341

Amino Acids

39.3

Weight (kDa)

5.89

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LCM PF04072 44 - 204 6.1e-19 Leucine carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc36I ACCTGC 1 cut(s) 395
AccII CGCG 3 cut(s) 168, 234, 489
AciI CCGC 5 cut(s) 69, 166, 168, 181, 232
AclWI GGATC 3 cut(s) 527, 540, 578
AcsI RAATTY 1 cut(s) 884
AcuI CTGAAG 1 cut(s) 246
AfiI CCNNNNNNNGG 2 cut(s) 238, 304
AgsI TTSAA 6 cut(s) 250, 383, 633, 839, 863, 890
AjnI CCWGG 1 cut(s) 803
AleI CACNNNNGTG 1 cut(s) 918
AluBI AGCT 6 cut(s) 202, 275, 469, 518, 797, 842
AluI AGCT 6 cut(s) 202, 275, 469, 518, 797, 842
Alw21I GWGCWC 3 cut(s) 322, 453, 915
AlwI GGATC 3 cut(s) 527, 540, 578
AlwNI CAGNNNCTG 2 cut(s) 17, 459
Ama87I CYCGRG 1 cut(s) 432
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 3 cut(s) 188, 685, 982
ApoI RAATTY 1 cut(s) 884
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 2 cut(s) 193, 489
AsuHPI GGTGA 2 cut(s) 144, 1011
AvaI CYCGRG 1 cut(s) 432
BaeI ACNNNNGTAYC 2 cut(s) 213, 246
BamHI GGATCC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 999
BauI CACGAG 1 cut(s) 992
BbsI GAAGAC 1 cut(s) 142
Bbv12I GWGCWC 3 cut(s) 322, 453, 915
BbvI GCAGC 3 cut(s) 175, 697, 994
BccI CCATC 2 cut(s) 780, 1007
BciT130I CCWGG 1 cut(s) 805
BclI TGATCA 1 cut(s) 693
BfaI CTAG 2 cut(s) 360, 594
BfmI CTRYAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 189, 686, 983
BlsI GCNGC 3 cut(s) 190, 687, 984
Bme1390I CCNGG 1 cut(s) 805
BmeT110I CYCGRG 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 805
BmsI GCATC 5 cut(s) 431, 626, 664, 894, 931
BpiI GAAGAC 1 cut(s) 142
BplI GAGNNNNNCTC 2 cut(s) 435, 467
BpuEI CTTGAG 1 cut(s) 828
BsaJI CCNNGG 2 cut(s) 166, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 304
Bse1I ACTGG 3 cut(s) 11, 298, 476
Bse3DI GCAATG 1 cut(s) 749
BseBI CCWGG 1 cut(s) 805
BseDI CCNNGG 2 cut(s) 166, 804
BseGI GGATG 4 cut(s) 313, 664, 791, 999
BseLI CCNNNNNNNGG 2 cut(s) 238, 304
BseMI GCAATG 1 cut(s) 749
BseMII CTCAG 2 cut(s) 466, 806
BseNI ACTGG 3 cut(s) 11, 298, 476
BseRI GAGGAG 2 cut(s) 456, 997
BseXI GCAGC 3 cut(s) 175, 697, 994
BseYI CCCAGC 3 cut(s) 183, 536, 612
Bsh1236I CGCG 3 cut(s) 168, 234, 489
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 3 cut(s) 322, 453, 915
BsiHKCI CYCGRG 1 cut(s) 432
BslFI GGGAC 2 cut(s) 416, 821
BslI CCNNNNNNNGG 2 cut(s) 238, 304
BsmFI GGGAC 2 cut(s) 416, 821
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 4 cut(s) 322, 453, 915, 999
Bsp143I GATC 5 cut(s) 149, 532, 583, 693, 778
BspACI CCGC 5 cut(s) 69, 166, 168, 181, 232
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 465, 807
BspFNI CGCG 3 cut(s) 168, 234, 489
BspLI GGNNCC 1 cut(s) 534
BspMAI CTGCAG 1 cut(s) 392
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 3 cut(s) 527, 540, 578
BsrDI GCAATG 1 cut(s) 749
BsrI ACTGG 3 cut(s) 11, 298, 476
BssECI CCNNGG 2 cut(s) 166, 804
BssMI GATC 5 cut(s) 149, 532, 583, 693, 778
BssSI CACGAG 1 cut(s) 992
Bst2BI CACGAG 1 cut(s) 992
Bst2UI CCWGG 1 cut(s) 805
Bst4CI ACNGT 2 cut(s) 81, 920
BstAPI GCANNNNNTGC 1 cut(s) 904
BstC8I GCNNGC 6 cut(s) 73, 181, 200, 277, 542, 756
BstDEI CTNAG 2 cut(s) 452, 815
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 4 cut(s) 313, 664, 791, 999
BstFNI CGCG 3 cut(s) 168, 234, 489
BstHHI GCGC 2 cut(s) 193, 489
BstKTI GATC 5 cut(s) 152, 535, 586, 696, 781
BstMBI GATC 5 cut(s) 149, 532, 583, 693, 778
BstMWI GCNNNNNNNGC 6 cut(s) 47, 185, 199, 751, 904, 988
BstNI CCWGG 1 cut(s) 805
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 1 cut(s) 803
BstSFI CTRYAG 1 cut(s) 388
BstUI CGCG 3 cut(s) 168, 234, 489
BstV1I GCAGC 3 cut(s) 175, 697, 994
BstV2I GAAGAC 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 4 cut(s) 313, 664, 791, 999
BtsIMutI CAGTG 2 cut(s) 18, 460
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 6 cut(s) 73, 181, 200, 277, 542, 756
CaiI CAGNNNCTG 2 cut(s) 17, 459
CfoI GCGC 2 cut(s) 193, 489
Cfr42I CCGCGG 1 cut(s) 169
CseI GACGC 2 cut(s) 71, 861
CviAII CATG 6 cut(s) 103, 737, 811, 901, 946, 1023
DdeI CTNAG 2 cut(s) 452, 815
DpnI GATC 5 cut(s) 151, 534, 585, 695, 780
DpnII GATC 5 cut(s) 149, 532, 583, 693, 778
EciI GGCGGA 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 999
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 803
EcoT38I GRGCYC 1 cut(s) 999
FaeI CATG 6 cut(s) 106, 740, 814, 904, 949, 1026
FaqI GGGAC 2 cut(s) 416, 821
FatI CATG 6 cut(s) 102, 736, 810, 900, 945, 1022
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 189, 686, 983
FokI GGATG 4 cut(s) 320, 651, 798, 986
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 3 cut(s) 189, 686, 983
FspBI CTAG 2 cut(s) 360, 594
GlaI GCGC 2 cut(s) 192, 488
GluI GCNGC 3 cut(s) 189, 686, 983
GsaI CCCAGC 3 cut(s) 187, 540, 616
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 2 cut(s) 71, 861
HhaI GCGC 2 cut(s) 193, 489
Hin1II CATG 6 cut(s) 106, 740, 814, 904, 949, 1026
Hin6I GCGC 2 cut(s) 191, 487
HinP1I GCGC 2 cut(s) 191, 487
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 5 cut(s) 208, 590, 661, 709, 949
HphI GGTGA 2 cut(s) 144, 1011
Hpy188I TCNGA 2 cut(s) 146, 698
Hpy188III TCNNGA 7 cut(s) 218, 432, 434, 587, 668, 776, 845
Hpy99I CGWCG 2 cut(s) 62, 65
HpyAV CCTTC 2 cut(s) 305, 361
HpyCH4III ACNGT 2 cut(s) 81, 920
HpyCH4V TGCA 7 cut(s) 304, 390, 416, 560, 754, 907, 932
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 185, 199, 751, 904, 988
HpyF3I CTNAG 2 cut(s) 452, 815
Hsp92II CATG 6 cut(s) 106, 740, 814, 904, 949, 1026
HspAI GCGC 2 cut(s) 191, 487
Ksp22I TGATCA 1 cut(s) 693
KspI CCGCGG 1 cut(s) 169
Kzo9I GATC 5 cut(s) 149, 532, 583, 693, 778
LmnI GCTCC 2 cut(s) 272, 910
Lsp1109I GCAGC 3 cut(s) 175, 697, 994
LweI GCATC 5 cut(s) 431, 626, 664, 894, 931
MaeI CTAG 2 cut(s) 360, 594
MaeIII GTNAC 4 cut(s) 98, 170, 355, 455
MalI GATC 5 cut(s) 151, 534, 585, 695, 780
MboI GATC 5 cut(s) 149, 532, 583, 693, 778
MboII GAAGA 4 cut(s) 147, 159, 262, 902
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 4 cut(s) 322, 453, 915, 999
MluCI AATT 7 cut(s) 375, 408, 500, 555, 639, 872, 884
MlyI GAGTC 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 9 cut(s) 346, 393, 434, 502, 707, 776, 952, 1015, 1018
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 3 cut(s) 162, 348, 503
MslI CAYNNNNRTG 3 cut(s) 669, 918, 1021
MspA1I CMGCKG 2 cut(s) 168, 183
MspR9I CCNGG 1 cut(s) 805
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 1 cut(s) 805
MvnI CGCG 3 cut(s) 168, 234, 489
MwoI GCNNNNNNNGC 6 cut(s) 47, 185, 199, 751, 904, 988
NdeII GATC 5 cut(s) 149, 532, 583, 693, 778
NlaIII CATG 6 cut(s) 106, 740, 814, 904, 949, 1026
NlaIV GGNNCC 1 cut(s) 534
NmuCI GTSAC 1 cut(s) 455
NspI RCATGY 1 cut(s) 814
OliI CACNNNNGTG 1 cut(s) 918
PaeR7I CTCGAG 1 cut(s) 432
PctI GAATGC 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 4 cut(s) 208, 590, 661, 949
PkrI GCNGC 3 cut(s) 190, 687, 984
PleI GAGTC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 717
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 1 cut(s) 803
PspFI CCCAGC 3 cut(s) 183, 536, 612
PspGI CCWGG 1 cut(s) 803
PspN4I GGNNCC 1 cut(s) 534
PstI CTGCAG 1 cut(s) 392
PstNI CAGNNNCTG 2 cut(s) 17, 459
PsuI RGATCY 1 cut(s) 532
RseI CAYNNNNRTG 3 cut(s) 669, 918, 1021
SacII CCGCGG 1 cut(s) 169
SaqAI TTAA 3 cut(s) 162, 348, 503
SatI GCNGC 3 cut(s) 189, 686, 983
Sau3AI GATC 5 cut(s) 149, 532, 583, 693, 778
SchI GAGTC 1 cut(s) 718
ScrFI CCNGG 1 cut(s) 805
SduI GDGCHC 4 cut(s) 322, 453, 915, 999
SfaNI GCATC 5 cut(s) 431, 626, 664, 894, 931
SfcI CTRYAG 1 cut(s) 388
Sfr274I CTCGAG 1 cut(s) 432
Sfr303I CCGCGG 1 cut(s) 169
SgrBI CCGCGG 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 432
SmiMI CAYNNNNRTG 3 cut(s) 669, 918, 1021
SmlI CTYRAG 2 cut(s) 432, 843
SmoI CTYRAG 2 cut(s) 432, 843
Sse9I AATT 7 cut(s) 375, 408, 500, 555, 639, 872, 884
SsiI CCGC 5 cut(s) 69, 166, 168, 181, 232
SspMI CTAG 2 cut(s) 360, 594
StyD4I CCNGG 1 cut(s) 803
TaaI ACNGT 2 cut(s) 81, 920
TaqI TCGA 3 cut(s) 433, 712, 781
TasI AATT 7 cut(s) 375, 408, 500, 555, 639, 872, 884
TfiI GAWTC 4 cut(s) 208, 590, 661, 949
Tru1I TTAA 3 cut(s) 162, 348, 503
Tru9I TTAA 3 cut(s) 162, 348, 503
TscAI CASTG 2 cut(s) 18, 460
TseFI GTSAC 1 cut(s) 455
TseI GCWGC 3 cut(s) 188, 685, 982
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 119, 221, 324, 653, 897, 962
TspRI CASTG 2 cut(s) 18, 460
XapI RAATTY 1 cut(s) 884
XceI RCATGY 1 cut(s) 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 18
XhoI CTCGAG 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 2 cut(s) 360, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.