FvH4_7g28991

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21411871 .. 21415730
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28991.t2

Sequence Viewer

Length: 1149 bp
ATGCCGTCTCTTCTTGAAGAATCCTTGTCGGGGGAATTCCTGCCTTCGTTTCGTACACAACAGATATGGGATTTGATTTCAATCTATTCAGAGTATTTACCTTACTGTTTTGTAGGTTTTGCTTTCATTTACATGGATGACGAGAGAGACGCTGACTATGCGATACGAGGACTCGATCGGAGAGAATTTGGTCGGAAAGGACGCAGGCTTCGTGTTGAATGGTCGAAGGTATCCAGTCATGAGCGTGGCTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTATCACAAGACCATCAAAGACCTTGTTTGTTATAAATTTTGATCCATATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAACTTCGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGAGGCTACAAACATGAGCAAGCTGATGGACCGAGTTATATCAGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTATAGCCCTGACAGGAGAAGTCGTGAGAGGTCACTAGAGAGAGGCCGTGACAGAAGACGTTCCCCAAGTCCCTACAAAAGAGAGAGGGGAAGTCCTGATTATGGCCGTGGCCCTAGTCCTGGTCCATACCGAAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAAAGAGCAAGCCCTGACTATGCCCGTGGGCATAGCCCTAGTCCTTATAGGAGGGAGAGATCTGATCATGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGCTGATCATGGCCGTGACCGCAGCCGCAGCCGCAGCCGTAGCCCTTATTTTGGAAGAGATGTGGCTGCTGCTGAAAATGGTCACGCTCGAAGCCCTAGTCCTACTCCTTATAAGAGAACTAGAGCTAGCCCTGAAAATGGTCATGGTCCCAACAGTAGCCCTTATGAGGGAGATAGAGCCAACAGCCCGGAGGAAGGTCGCATTCCGAGTCCCAACTCAGTGCCCGATGCCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGTCGGTCACCCCAAGCCGAGGAGGAATGA

Protein Analysis

383

Amino Acids

44.15

Weight (kDa)

9.92

Isoelectric Point (pI)

85.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 62 1.4e-12 RNA recognition motif
RRM_1 PF00076 100 - 162 4.4e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 317, 945
AciI CCGC 3 cut(s) 853, 859, 865
AclWI GGATC 4 cut(s) 320, 362, 391, 404
AcoI YGGCCR 2 cut(s) 643, 844
AcsI RAATTY 3 cut(s) 35, 185, 319
AfaI GTAC 1 cut(s) 55
AgsI TTSAA 6 cut(s) 17, 81, 218, 270, 282, 503
AjiI CACGTC 1 cut(s) 701
AjnI CCWGG 3 cut(s) 259, 338, 658
AluBI AGCT 2 cut(s) 478, 959
AluI AGCT 2 cut(s) 478, 959
Alw26I GTCTC 3 cut(s) 12, 141, 805
AlwI GGATC 4 cut(s) 320, 362, 391, 404
AoxI GGCC 5 cut(s) 583, 643, 649, 844, 1088
ApeKI GCWGC 5 cut(s) 855, 861, 867, 899, 902
ApoI RAATTY 3 cut(s) 35, 185, 319
ArsI GACNNNNNNTTYG 6 cut(s) 192, 224, 334, 366, 916, 948
Asp700I GAANNNNTTC 2 cut(s) 277, 598
AspS9I GGNCC 6 cut(s) 342, 484, 650, 662, 980, 1088
AsuC2I CCSGG 1 cut(s) 1022
AsuHPI GGTGA 2 cut(s) 841, 1119
AsuNHI GCTAGC 1 cut(s) 959
AvaII GGWCC 4 cut(s) 342, 484, 662, 980
BaeGI GKGCMC 2 cut(s) 454, 1059
BamHI GGATCC 1 cut(s) 396
BbsI GAAGAC 3 cut(s) 262, 270, 601
BbvI GCAGC 5 cut(s) 867, 873, 879, 886, 889
BccI CCATC 3 cut(s) 304, 475, 530
BceAI ACGGC 4 cut(s) 570, 630, 831, 855
BciT130I CCWGG 3 cut(s) 261, 340, 660
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 2 cut(s) 787, 838
BcnI CCSGG 1 cut(s) 1022
BcoDI GTCTC 3 cut(s) 12, 141, 805
BfaI CTAG 8 cut(s) 252, 447, 575, 654, 762, 930, 954, 960
BfmI CTRYAG 1 cut(s) 541
BfuI GTATCC 1 cut(s) 241
BglII AGATCT 1 cut(s) 782
BisI GCNGC 7 cut(s) 856, 859, 862, 865, 868, 900, 903
BlsI GCNGC 7 cut(s) 857, 860, 863, 866, 869, 901, 904
Bme1390I CCNGG 4 cut(s) 261, 340, 660, 1022
Bme18I GGWCC 4 cut(s) 342, 484, 662, 980
BmgBI CACGTC 1 cut(s) 701
BmgT120I GGNCC 6 cut(s) 342, 484, 650, 662, 980, 1088
BmiI GGNNCC 2 cut(s) 398, 982
BmrFI CCNGG 4 cut(s) 261, 340, 660, 1022
BmsI GCATC 2 cut(s) 430, 1051
BmtI GCTAGC 1 cut(s) 963
BpiI GAAGAC 3 cut(s) 262, 270, 601
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 2 cut(s) 476, 787
BpuMI CCSGG 1 cut(s) 1022
BsaBI GATNNNNATC 2 cut(s) 80, 330
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 5 cut(s) 345, 646, 748, 1065, 1137
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bse1I ACTGG 3 cut(s) 234, 459, 804
Bse8I GATNNNNATC 2 cut(s) 80, 330
BseBI CCWGG 3 cut(s) 261, 340, 660
BseDI CCNNGG 5 cut(s) 345, 646, 748, 1065, 1137
BseGI GGATG 2 cut(s) 142, 445
BseJI GATNNNNATC 2 cut(s) 80, 330
BseMII CTCAG 1 cut(s) 1065
BseNI ACTGG 3 cut(s) 234, 459, 804
BseSI GKGCMC 2 cut(s) 454, 1059
BseXI GCAGC 5 cut(s) 867, 873, 879, 886, 889
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 5 cut(s) 585, 645, 651, 846, 1090
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 1022
BslFI GGGAC 4 cut(s) 594, 798, 966, 1029
BsmAI GTCTC 3 cut(s) 12, 141, 805
BsmBI CGTCTC 2 cut(s) 12, 141
BsmFI GGGAC 4 cut(s) 594, 798, 966, 1029
BsmI GAATGC 1 cut(s) 1035
BsnI GGCC 5 cut(s) 585, 645, 651, 846, 1090
Bso31I GGTCTC 1 cut(s) 805
Bsp1286I GDGCHC 2 cut(s) 454, 1059
Bsp143I GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
BspACI CCGC 3 cut(s) 853, 859, 865
BspANI GGCC 5 cut(s) 585, 645, 651, 846, 1090
BspCNI CTCAG 1 cut(s) 1064
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 398, 982
BspOI GCTAGC 1 cut(s) 963
BspPI GGATC 4 cut(s) 320, 362, 391, 404
BspTNI GGTCTC 1 cut(s) 805
BsrI ACTGG 3 cut(s) 234, 459, 804
BssECI CCNNGG 5 cut(s) 345, 646, 748, 1065, 1137
BssMI GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
BssT1I CCWWGG 2 cut(s) 345, 1065
Bst2UI CCWGG 3 cut(s) 261, 340, 660
Bst4CI ACNGT 3 cut(s) 107, 989, 1121
Bst6I CTCTTC 3 cut(s) 15, 526, 883
BstC8I GCNNGC 4 cut(s) 206, 476, 733, 961
BstDEI CTNAG 1 cut(s) 1051
BstDSI CCRYGG 2 cut(s) 646, 748
BstEII GGTNACC 1 cut(s) 1125
BstF5I GGATG 2 cut(s) 142, 445
BstKTI GATC 7 cut(s) 178, 328, 370, 399, 785, 790, 841
BstMAI GTCTC 3 cut(s) 12, 141, 805
BstMBI GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 8 cut(s) 158, 449, 458, 852, 861, 864, 867, 873
BstNI CCWGG 3 cut(s) 261, 340, 660
BstPI GGTNACC 1 cut(s) 1125
BstSCI CCNGG 4 cut(s) 259, 338, 658, 1020
BstSFI CTRYAG 1 cut(s) 541
BstSLI GKGCMC 2 cut(s) 454, 1059
BstV1I GCAGC 5 cut(s) 867, 873, 879, 886, 889
BstV2I GAAGAC 3 cut(s) 262, 270, 601
BstX2I RGATCY 2 cut(s) 396, 782
BstXI CCANNNNNNTGG 1 cut(s) 352
BstYI RGATCY 2 cut(s) 396, 782
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 5 cut(s) 585, 645, 651, 846, 1090
BtgI CCRYGG 2 cut(s) 646, 748
BtrI CACGTC 1 cut(s) 701
BtsCI GGATG 2 cut(s) 142, 445
BtsIMutI CAGTG 2 cut(s) 452, 1059
Cac8I GCNNGC 4 cut(s) 206, 476, 733, 961
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 6 cut(s) 342, 484, 650, 662, 980, 1088
CseI GACGC 2 cut(s) 158, 210
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 1066, 1101
CviAII CATG 8 cut(s) 133, 239, 469, 791, 842, 977, 1102, 1106
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 1 cut(s) 1051
DpnI GATC 7 cut(s) 177, 327, 369, 398, 784, 789, 840
DpnII GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
EaeI YGGCCR 2 cut(s) 643, 844
Eam1104I CTCTTC 3 cut(s) 15, 526, 883
EarI CTCTTC 3 cut(s) 15, 526, 883
Eco130I CCWWGG 2 cut(s) 345, 1065
Eco31I GGTCTC 1 cut(s) 805
Eco47I GGWCC 4 cut(s) 342, 484, 662, 980
Eco91I GGTNACC 1 cut(s) 1125
EcoO65I GGTNACC 1 cut(s) 1125
EcoRI GAATTC 1 cut(s) 35
EcoRII CCWGG 3 cut(s) 259, 338, 658
EcoT14I CCWWGG 2 cut(s) 345, 1065
EcoT22I ATGCAT 1 cut(s) 1107
ErhI CCWWGG 2 cut(s) 345, 1065
Esp3I CGTCTC 2 cut(s) 12, 141
FaeI CATG 8 cut(s) 136, 242, 472, 794, 845, 980, 1105, 1109
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FaqI GGGAC 4 cut(s) 594, 798, 966, 1029
FatI CATG 8 cut(s) 132, 238, 468, 790, 841, 976, 1101, 1105
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 787, 838
Fnu4HI GCNGC 7 cut(s) 856, 859, 862, 865, 868, 900, 903
FokI GGATG 2 cut(s) 149, 452
Fsp4HI GCNGC 7 cut(s) 856, 859, 862, 865, 868, 900, 903
FspBI CTAG 8 cut(s) 252, 447, 575, 654, 762, 930, 954, 960
GluI GCNGC 7 cut(s) 856, 859, 862, 865, 868, 900, 903
GsuI CTGGAG 2 cut(s) 476, 787
HaeIII GGCC 5 cut(s) 585, 645, 651, 846, 1090
HapII CCGG 1 cut(s) 1022
HgaI GACGC 2 cut(s) 158, 210
Hin1II CATG 8 cut(s) 136, 242, 472, 794, 845, 980, 1105, 1109
HinfI GANTC 4 cut(s) 20, 171, 428, 1042
HpaII CCGG 1 cut(s) 1022
HphI GGTGA 2 cut(s) 841, 1119
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 6 cut(s) 91, 180, 195, 401, 787, 1041
Hpy188III TCNNGA 8 cut(s) 14, 239, 252, 270, 515, 563, 635, 689
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 7 cut(s) 54, 220, 267, 396, 666, 714, 1022
HpyCH4III ACNGT 3 cut(s) 107, 989, 1121
HpyCH4IV ACGT 2 cut(s) 598, 700
HpyCH4V TGCA 2 cut(s) 509, 1105
HpyF10VI GCNNNNNNNGC 8 cut(s) 158, 449, 458, 852, 861, 864, 867, 873
HpyF3I CTNAG 1 cut(s) 1051
HpySE526I ACGT 2 cut(s) 598, 700
Hsp92II CATG 8 cut(s) 136, 242, 472, 794, 845, 980, 1105, 1109
Ksp22I TGATCA 2 cut(s) 787, 838
Kzo9I GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
Lsp1109I GCAGC 5 cut(s) 867, 873, 879, 886, 889
LweI GCATC 2 cut(s) 430, 1051
MabI ACCWGGT 1 cut(s) 259
MaeI CTAG 8 cut(s) 252, 447, 575, 654, 762, 930, 954, 960
MaeII ACGT 2 cut(s) 598, 700
MaeIII GTNAC 6 cut(s) 429, 570, 587, 848, 914, 1125
MalI GATC 7 cut(s) 177, 327, 369, 398, 784, 789, 840
MboI GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
MboII GAAGA 6 cut(s) 29, 267, 270, 543, 606, 900
MflI RGATCY 2 cut(s) 396, 782
MhlI GDGCHC 2 cut(s) 454, 1059
MluCI AATT 4 cut(s) 35, 185, 319, 1078
MlyI GAGTC 3 cut(s) 165, 437, 1051
MmeI TCCRAC 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 1107
MroXI GAANNNNTTC 2 cut(s) 277, 598
MslI CAYNNNNRTG 3 cut(s) 131, 243, 846
MspI CCGG 1 cut(s) 1022
MspR9I CCNGG 4 cut(s) 261, 340, 660, 1022
Mva1269I GAATGC 1 cut(s) 1035
MvaI CCWGG 3 cut(s) 261, 340, 660
MwoI GCNNNNNNNGC 8 cut(s) 158, 449, 458, 852, 861, 864, 867, 873
NciI CCSGG 1 cut(s) 1022
NdeI CATATG 1 cut(s) 373
NdeII GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
NheI GCTAGC 1 cut(s) 959
NlaIII CATG 8 cut(s) 136, 242, 472, 794, 845, 980, 1105, 1109
NlaIV GGNNCC 2 cut(s) 398, 982
NmuCI GTSAC 6 cut(s) 429, 570, 587, 848, 914, 1125
NsiI ATGCAT 1 cut(s) 1107
PagI TCATGA 1 cut(s) 238
PcsI WCGNNNNNNNCGW 2 cut(s) 208, 814
PctI GAATGC 1 cut(s) 1035
PdmI GAANNNNTTC 2 cut(s) 277, 598
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 7 cut(s) 857, 860, 863, 866, 869, 901, 904
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 3 cut(s) 165, 436, 1050
PpsI GAGTC 3 cut(s) 165, 436, 1050
PsiI TTATAA 2 cut(s) 317, 945
Psp6I CCWGG 3 cut(s) 259, 338, 658
PspEI GGTNACC 1 cut(s) 1125
PspGI CCWGG 3 cut(s) 259, 338, 658
PspN4I GGNNCC 2 cut(s) 398, 982
PspPI GGNCC 6 cut(s) 342, 484, 650, 662, 980, 1088
PsuI RGATCY 2 cut(s) 396, 782
PvuI CGATCG 1 cut(s) 178
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
RseI CAYNNNNRTG 3 cut(s) 131, 243, 846
SatI GCNGC 7 cut(s) 856, 859, 862, 865, 868, 900, 903
Sau3AI GATC 7 cut(s) 175, 325, 367, 396, 782, 787, 838
Sau96I GGNCC 6 cut(s) 342, 484, 650, 662, 980, 1088
SchI GAGTC 3 cut(s) 165, 437, 1051
ScrFI CCNGG 4 cut(s) 261, 340, 660, 1022
SduI GDGCHC 2 cut(s) 454, 1059
SexAI ACCWGGT 1 cut(s) 259
SfaNI GCATC 2 cut(s) 430, 1051
SfcI CTRYAG 1 cut(s) 541
SinI GGWCC 4 cut(s) 342, 484, 662, 980
SmiMI CAYNNNNRTG 3 cut(s) 131, 243, 846
Sse9I AATT 4 cut(s) 35, 185, 319, 1078
SsiI CCGC 3 cut(s) 853, 859, 865
SspMI CTAG 8 cut(s) 252, 447, 575, 654, 762, 930, 954, 960
StyD4I CCNGG 4 cut(s) 259, 338, 658, 1020
StyI CCWWGG 2 cut(s) 345, 1065
TaaI ACNGT 3 cut(s) 107, 989, 1121
TaiI ACGT 2 cut(s) 601, 703
TaqI TCGA 3 cut(s) 174, 224, 922
TaqII GACCGA 2 cut(s) 501, 1113
TasI AATT 4 cut(s) 35, 185, 319, 1078
TauI GCSGC 2 cut(s) 861, 867
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 2 cut(s) 459, 1059
TseFI GTSAC 6 cut(s) 429, 570, 587, 848, 914, 1125
TseI GCWGC 5 cut(s) 855, 861, 867, 899, 902
Tsp45I GTSAC 6 cut(s) 429, 570, 587, 848, 914, 1125
TspDTI ATGAA 2 cut(s) 115, 540
TspRI CASTG 2 cut(s) 459, 1059
VpaK11BI GGWCC 4 cut(s) 342, 484, 662, 980
XapI RAATTY 3 cut(s) 35, 185, 319
XbaI TCTAGA 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 277, 598
XspI CTAG 8 cut(s) 252, 447, 575, 654, 762, 930, 954, 960
Zsp2I ATGCAT 1 cut(s) 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.