Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000932

Physical Location & Seq

Genomic Coordinates Forward (+)

50664717 .. 50666689

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0397600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGAATTCGAAACTGGTCCAAGTCTCGGAGCAAGAGGTCCGAATCGACTTCACCCTCAACCAAAAATGCCGCGCCAACGTCCGCCTGACCTCCCTGAGCTCCACGTGCCCCGTCGCCTTCAAGGTCCAGACCTCCTCTCCTGACAAGTTCCTCGTCAAGCCCCCCACCGGCCTCATCCCTCCCTTATCCTTCGCCACCTTCCAGGTCGTCCTCAAGCCCCAGTCCCACCTCCCCGCCTCCTTTCCCCGCTCCCCCGCCGACCGCTTCCTCATCAAGACCGCCGAGTTCTTCCCCTCCGCCGGCGCCAACTCCGACTCCCTCGACTCCTGGTTCAGGGGGGCCCACACTCGCGACCTCAAGCTCAAGGTCGCCTTCGTGGGCCCCGTTCTTCTGCGGCACGCCGTGCGCGGCGGGGATTGCGAGGCGGTCAGGAATATAATCAGGCGGCAGAGGACGATTCTGGCGGAGCTGACGCCAGGGGAGGCCGAGTCGCTGCTCCGAGTCGCGACCGAGTTGGCCGAGCCGGAGAGGATGATTAATTTGCTGCTTGAGGCCGGGTTGAGGATCGAGGCGGGTCTGAGGTTGGATCAGGTGGATGAGGAATTGGTGCGGAACGGGATGGATGAGCTACGCGTGGCGGAGCCTTCTGATCGGTTTGCTAGTGTTCTGGGTTTTAGGGAATCTGGACCGTCGACAGCAGAAGACCCCAGCAGGATAAGTAAAGGTCATGGCCATCGTCCACGAGTTGCCACTGATAGTGATAAGCTAGAATTGGGGGAACAAATGTTGATGGCAGCGCGAATCGGGGATTTGAGAGATGTGGAACTGTTGTTTCTTAAAGGAGCAGACATCAGCTACTGTGATCAATATGGCTTGACAGCTCTTCATGCGGCAGCCATTAAAGGGCACAAGGAGGTTGTTCTGATGCTGGTCGAATTTGGGCTAGACTTGGAATCCAGAGACAGTGAAGGCCATGCGCCGCTGCATTTGGCGGTTGTGGGGGGAAACTTGGAGACGGTTGAGATGTTGATACAGAATGGGGCTAATGTGAATGCCAAGAGCAAGAGTGGGGCTACTCCTTTGTACATGGCCACAGCTATGGGGTATGATGATATCACTGAGTTTCTTATCAGCAGAGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010445 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031053 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

382

Amino Acids

41.75

Weight (kDa)

5.8

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	17 - 112	7.4e-12	MSP (Major sperm protein) domain
Ank_2	PF12796	265 - 354	1.1e-19	Ankyrin repeats (3 copies)
Ank_4	PF13637	270 - 312	4.9e-07	Ankyrin repeats (many copies)
Ank_5	PF13857	286 - 332	6e-07	Ankyrin repeats (many copies)
Ank_4	PF13637	296 - 344	2e-08	Ankyrin repeats (many copies)
Ank	PF00023	325 - 355	7.4e-08	Ankyrin repeat
Ank_4	PF13637	329 - 378	1.1e-09	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT4G25500 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040 AT5G52040
fragaria_vesca	FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g13160 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991 FvH4_7g28991
malus_domestica	MD01G1051400.v1.1 MD01G1196700.v1.1 MD07G1128300.v1.1 MD07G1264000.v1.1
prunus_persica	Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G154900_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1 Prupe.2G290100_v2.0.a1
pyrus_communis	pycom01g07610 pycom07g12390 pycom07g24260
rosa_chinensis	RchiOBHm_Chr1g0352321 RchiOBHm_Chr1g0376701
rosa_laevigata	RLG00000026578 RLG00000028343
rosa_multiflora	Rmu_co8401165.1_g000001 Rmu_sc0009691.1_g000002
rosa_roxburghii	Rroxscaffold_4G00281870 Rroxscaffold_4G00303030
rosa_rugosa	Rorug01G0226500 Rorug01G0226600 Rorug01G0226700 Rorug01G0226700 Rorug01G0397600
rosa_samantha	Rh1AG241000 Rh1AG414700 Rh1BG211800 Rh1BG374100 Rh1CG224800 Rh1CG388000 Rh1DG238200 Rh1DG404900
rosa_wichuraiana	Rw1G020870 Rw1G020950 Rw1G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
AclWI	GGATC	2 cut(s)	575, 597
AcoI	YGGCCR	3 cut(s)	519, 733, 1092
AcsI	RAATTY	2 cut(s)	7, 938
AcvI	CACGTG	1 cut(s)	108
AcyI	GRCGYC	2 cut(s)	306, 476
AdeI	CACNNNGTG	1 cut(s)	406
AfaI	GTAC	1 cut(s)	1088
AfiI	CCNNNNNNNGG	6 cut(s)	28, 170, 302, 336, 564, 906
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	3 cut(s)	204, 329, 478
AluBI	AGCT	8 cut(s)	102, 364, 472, 631, 769, 858, 884, 1100
AluI	AGCT	8 cut(s)	102, 364, 472, 631, 769, 858, 884, 1100
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	31, 957, 1010
AlwI	GGATC	2 cut(s)	575, 597
AlwNI	CAGNNNCTG	1 cut(s)	861
AoxI	GGCC	9 cut(s)	172, 342, 382, 486, 519, 555, 733, 973, 1092
ApaI	GGGCCC	2 cut(s)	346, 386
ApeKI	GCWGC	5 cut(s)	496, 547, 797, 896, 985
ApoI	RAATTY	2 cut(s)	7, 938
AseI	ATTAAT	1 cut(s)	540
AspLEI	GCGC	5 cut(s)	77, 308, 411, 802, 982
AspS9I	GGNCC	8 cut(s)	19, 40, 127, 342, 343, 382, 383, 689
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	11
AvaII	GGWCC	4 cut(s)	19, 40, 127, 689
BaeGI	GKGCMC	4 cut(s)	113, 346, 386, 912
BalI	TGGCCA	2 cut(s)	735, 1094
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	3 cut(s)	104, 346, 386
BauI	CACGAG	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	5 cut(s)	483, 534, 809, 908, 972
BccI	CCATC	3 cut(s)	616, 744, 787
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	3 cut(s)	206, 331, 480
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	3 cut(s)	31, 957, 1010
BfaI	CTAG	3 cut(s)	663, 770, 947
BfoI	RGCGCY	1 cut(s)	309
Bme1390I	CCNGG	4 cut(s)	206, 331, 480, 559
Bme18I	GGWCC	4 cut(s)	19, 40, 127, 689
BmgT120I	GGNCC	8 cut(s)	19, 40, 127, 342, 343, 382, 383, 689
BmiI	GGNNCC	6 cut(s)	307, 343, 344, 384, 385, 645
BmrFI	CCNGG	4 cut(s)	206, 331, 480, 559
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	918
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	4 cut(s)	200, 344, 350, 572
BpuMI	CCSGG	1 cut(s)	559
BsaAI	YACGTR	1 cut(s)	108
BsaHI	GRCGYC	2 cut(s)	306, 476
BsaJI	CCNNGG	1 cut(s)	479
BsaXI	ACNNNNNCTCC	6 cut(s)	124, 154, 302, 332, 476, 506
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 170, 302, 336, 564, 906
Bse118I	RCCGGY	2 cut(s)	170, 302
Bse1I	ACTGG	2 cut(s)	21, 223
BseBI	CCWGG	3 cut(s)	206, 331, 480
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	5 cut(s)	177, 540, 604, 627, 631
BseLI	CCNNNNNNNGG	6 cut(s)	28, 170, 302, 336, 564, 906
BseMII	CTCAG	3 cut(s)	89, 572, 1113
BseNI	ACTGG	2 cut(s)	21, 223
BseRI	GAGGAG	1 cut(s)	127
BseSI	GKGCMC	4 cut(s)	113, 346, 386, 912
BseXI	GCAGC	5 cut(s)	483, 534, 809, 908, 972
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
Bsh1285I	CGRYCG	2 cut(s)	265, 513
BshFI	GGCC	9 cut(s)	174, 344, 384, 488, 521, 557, 735, 975, 1094
BshNI	GGYRCC	1 cut(s)	305
BsiEI	CGRYCG	2 cut(s)	265, 513
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	4 cut(s)	171, 303, 527, 558
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	6 cut(s)	28, 170, 302, 336, 564, 906
BsmAI	GTCTC	3 cut(s)	31, 957, 1010
BsmBI	CGTCTC	1 cut(s)	1010
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	1060
BsnI	GGCC	9 cut(s)	174, 344, 384, 488, 521, 557, 735, 975, 1094
Bsp119I	TTCGAA	1 cut(s)	11
Bsp120I	GGGCCC	2 cut(s)	342, 382
Bsp1286I	GDGCHC	5 cut(s)	104, 113, 346, 386, 912
Bsp1407I	TGTACA	1 cut(s)	1086
Bsp143I	GATC	4 cut(s)	567, 589, 652, 865
Bsp68I	TCGCGA	2 cut(s)	354, 509
BspANI	GGCC	9 cut(s)	174, 344, 384, 488, 521, 557, 735, 975, 1094
BspCNI	CTCAG	3 cut(s)	90, 573, 1114
BspFNI	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
BspLI	GGNNCC	6 cut(s)	307, 343, 344, 384, 385, 645
BspPI	GGATC	2 cut(s)	575, 597
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	252
BsrFI	RCCGGY	2 cut(s)	170, 302
BsrGI	TGTACA	1 cut(s)	1086
BsrI	ACTGG	2 cut(s)	21, 223
BssAI	RCCGGY	2 cut(s)	170, 302
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	4 cut(s)	567, 589, 652, 865
BssNI	GRCGYC	2 cut(s)	306, 476
BssSI	CACGAG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	744
Bst2UI	CCWGG	3 cut(s)	206, 331, 480
Bst4CI	ACNGT	5 cut(s)	693, 831, 863, 968, 1021
Bst6I	CTCTTC	1 cut(s)	891
BstACI	GRCGYC	2 cut(s)	306, 476
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstAUI	TGTACA	1 cut(s)	1086
BstBAI	YACGTR	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	304, 402
BstDEI	CTNAG	3 cut(s)	98, 581, 1122
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	5 cut(s)	177, 540, 604, 627, 631
BstFNI	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	5 cut(s)	77, 308, 411, 802, 982
BstKTI	GATC	4 cut(s)	570, 592, 655, 868
BstMAI	GTCTC	3 cut(s)	31, 957, 1010
BstMBI	GATC	4 cut(s)	567, 589, 652, 865
BstMCI	CGRYCG	2 cut(s)	265, 513
BstMWI	GCNNNNNNNGC	5 cut(s)	108, 406, 420, 890, 1143
BstNI	CCWGG	3 cut(s)	206, 331, 480
BstSCI	CCNGG	4 cut(s)	204, 329, 478, 557
BstSLI	GKGCMC	4 cut(s)	113, 346, 386, 912
BstUI	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
BstV1I	GCAGC	5 cut(s)	483, 534, 809, 908, 972
BstV2I	GAAGAC	1 cut(s)	711
BstXI	CCANNNNNNTGG	1 cut(s)	1102
BsuRI	GGCC	9 cut(s)	174, 344, 384, 488, 521, 557, 735, 975, 1094
BtsCI	GGATG	5 cut(s)	177, 540, 604, 627, 631
BtsIMutI	CAGTG	3 cut(s)	753, 973, 1119
BtuMI	TCGCGA	2 cut(s)	354, 509
Cac8I	GCNNGC	2 cut(s)	304, 402
CaiI	CAGNNNCTG	1 cut(s)	861
CfoI	GCGC	5 cut(s)	77, 308, 411, 802, 982
Cfr10I	RCCGGY	2 cut(s)	170, 302
Cfr13I	GGNCC	8 cut(s)	19, 40, 127, 342, 343, 382, 383, 689
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	1 cut(s)	1087
CviAII	CATG	4 cut(s)	731, 890, 977, 1090
CviQI	GTAC	1 cut(s)	1087
DdeI	CTNAG	3 cut(s)	98, 581, 1122
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	4 cut(s)	569, 591, 654, 867
DpnII	GATC	4 cut(s)	567, 589, 652, 865
DraIII	CACNNNGTG	1 cut(s)	406
EaeI	YGGCCR	3 cut(s)	519, 733, 1092
Eam1104I	CTCTTC	1 cut(s)	891
EarI	CTCTTC	1 cut(s)	891
EciI	GGCGGA	4 cut(s)	74, 289, 482, 656
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	3 cut(s)	104, 346, 386
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	4 cut(s)	19, 40, 127, 689
Eco53kI	GAGCTC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoO109I	RGGNCCY	2 cut(s)	342, 383
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	3 cut(s)	204, 329, 478
EcoRV	GATATC	1 cut(s)	1117
EcoT38I	GRGCYC	3 cut(s)	104, 346, 386
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	1010
FaeI	CATG	4 cut(s)	734, 893, 980, 1093
FaiI	YATR	8 cut(s)	440, 732, 873, 891, 978, 1091, 1103, 1110
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	4 cut(s)	730, 889, 976, 1089
FauI	CCCGC	5 cut(s)	244, 257, 265, 407, 568
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	1 cut(s)	695
FokI	GGATG	5 cut(s)	164, 547, 611, 634, 638
FriOI	GRGCYC	3 cut(s)	104, 346, 386
FspBI	CTAG	3 cut(s)	663, 770, 947
GlaI	GCGC	5 cut(s)	76, 307, 410, 801, 981
GsaI	CCCAGC	1 cut(s)	714
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	9 cut(s)	174, 344, 384, 488, 521, 557, 735, 975, 1094
HapII	CCGG	4 cut(s)	171, 303, 527, 558
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	5 cut(s)	77, 308, 411, 802, 982
Hin1I	GRCGYC	2 cut(s)	306, 476
Hin1II	CATG	4 cut(s)	734, 893, 980, 1093
Hin6I	GCGC	5 cut(s)	75, 306, 409, 800, 980
HinP1I	GCGC	5 cut(s)	75, 306, 409, 800, 980
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	9 cut(s)	45, 317, 326, 460, 491, 504, 683, 804, 956
HpaII	CCGG	4 cut(s)	171, 303, 527, 558
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	696, 743
Hpy188I	TCNGA	7 cut(s)	31, 44, 316, 503, 582, 652, 927
Hpy188III	TCNNGA	8 cut(s)	130, 143, 277, 353, 433, 508, 687, 960
Hpy8I	GTNNAC	2 cut(s)	696, 743
Hpy99I	CGWCG	2 cut(s)	119, 697
HpyAV	CCTTC	6 cut(s)	130, 202, 211, 385, 657, 965
HpyCH4III	ACNGT	5 cut(s)	693, 831, 863, 968, 1021
HpyCH4IV	ACGT	2 cut(s)	81, 107
HpyCH4V	TGCA	1 cut(s)	988
HpyF10VI	GCNNNNNNNGC	5 cut(s)	108, 406, 420, 890, 1143
HpyF3I	CTNAG	3 cut(s)	98, 581, 1122
HpySE526I	ACGT	2 cut(s)	81, 107
Hsp92I	GRCGYC	2 cut(s)	306, 476
Hsp92II	CATG	4 cut(s)	734, 893, 980, 1093
HspAI	GCGC	5 cut(s)	75, 306, 409, 800, 980
KasI	GGCGCC	1 cut(s)	305
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	4 cut(s)	567, 589, 652, 865
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	7 cut(s)	31, 107, 257, 469, 504, 643, 845
Lsp1109I	GCAGC	5 cut(s)	483, 534, 809, 908, 972
LweI	GCATC	1 cut(s)	918
MaeI	CTAG	3 cut(s)	663, 770, 947
MaeII	ACGT	2 cut(s)	81, 107
MalI	GATC	4 cut(s)	569, 591, 654, 867
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	4 cut(s)	567, 589, 652, 865
MboII	GAAGA	4 cut(s)	283, 383, 716, 878
MhlI	GDGCHC	5 cut(s)	104, 113, 346, 386, 912
MlsI	TGGCCA	2 cut(s)	735, 1094
MluCI	AATT	5 cut(s)	7, 541, 605, 773, 938
MluI	ACGCGT	1 cut(s)	634
MluNI	TGGCCA	2 cut(s)	735, 1094
Mly113I	GGCGCC	1 cut(s)	306
MlyI	GAGTC	4 cut(s)	311, 320, 500, 513
MmeI	TCCRAC	2 cut(s)	339, 567
Mox20I	TGGCCA	2 cut(s)	735, 1094
MreI	CGCCGGCG	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	302
MscI	TGGCCA	2 cut(s)	735, 1094
MseI	TTAA	3 cut(s)	540, 840, 903
MslI	CAYNNNNRTG	1 cut(s)	1100
Msp20I	TGGCCA	2 cut(s)	735, 1094
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	4 cut(s)	171, 303, 527, 558
MspR9I	CCNGG	4 cut(s)	206, 331, 480, 559
Mva1269I	GAATGC	1 cut(s)	1060
MvaI	CCWGG	3 cut(s)	206, 331, 480
MvnI	CGCG	6 cut(s)	75, 354, 411, 509, 636, 802
MwoI	GCNNNNNNNGC	5 cut(s)	108, 406, 420, 890, 1143
NaeI	GCCGGC	1 cut(s)	304
NarI	GGCGCC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	4 cut(s)	567, 589, 652, 865
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	734, 893, 980, 1093
NlaIV	GGNNCC	6 cut(s)	307, 343, 344, 384, 385, 645
NmeAIII	GCCGAG	3 cut(s)	310, 514, 547
NruI	TCGCGA	2 cut(s)	354, 509
NspV	TTCGAA	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	1060
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	5 cut(s)	45, 460, 683, 804, 956
PleI	GAGTC	4 cut(s)	311, 320, 499, 512
PluTI	GGCGCC	1 cut(s)	309
PmaCI	CACGTG	1 cut(s)	108
PmlI	CACGTG	1 cut(s)	108
PpsI	GAGTC	4 cut(s)	311, 320, 499, 512
Ppu21I	YACGTR	1 cut(s)	108
PshBI	ATTAAT	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	3 cut(s)	204, 329, 478
PspCI	CACGTG	1 cut(s)	108
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	3 cut(s)	204, 329, 478
PspN4I	GGNNCC	6 cut(s)	307, 343, 344, 384, 385, 645
PspOMI	GGGCCC	2 cut(s)	342, 382
PspPI	GGNCC	8 cut(s)	19, 40, 127, 342, 343, 382, 383, 689
PstNI	CAGNNNCTG	1 cut(s)	861
RruI	TCGCGA	2 cut(s)	354, 509
RsaI	GTAC	1 cut(s)	1088
RsaNI	GTAC	1 cut(s)	1087
RseI	CAYNNNNRTG	1 cut(s)	1100
SacI	GAGCTC	1 cut(s)	104
SalI	GTCGAC	1 cut(s)	694
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	540, 840, 903
Sau3AI	GATC	4 cut(s)	567, 589, 652, 865
Sau96I	GGNCC	8 cut(s)	19, 40, 127, 342, 343, 382, 383, 689
SchI	GAGTC	4 cut(s)	311, 320, 500, 513
ScrFI	CCNGG	4 cut(s)	206, 331, 480, 559
SduI	GDGCHC	5 cut(s)	104, 113, 346, 386, 912
SfaNI	GCATC	1 cut(s)	918
SfoI	GGCGCC	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	11
SgrAI	CRCCGGYG	1 cut(s)	302
SinI	GGWCC	4 cut(s)	19, 40, 127, 689
SmiMI	CAYNNNNRTG	1 cut(s)	1100
SmlI	CTYRAG	4 cut(s)	215, 359, 365, 551
SmoI	CTYRAG	4 cut(s)	215, 359, 365, 551
Sse9I	AATT	5 cut(s)	7, 541, 605, 773, 938
SspDI	GGCGCC	1 cut(s)	305
SspMI	CTAG	3 cut(s)	663, 770, 947
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	4 cut(s)	204, 329, 478, 557
TaaI	ACNGT	5 cut(s)	693, 831, 863, 968, 1021
TaiI	ACGT	2 cut(s)	84, 110
TaqI	TCGA	6 cut(s)	11, 48, 324, 570, 695, 936
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	5 cut(s)	7, 541, 605, 773, 938
TatI	WGTACW	1 cut(s)	1086
TauI	GCSGC	6 cut(s)	75, 400, 414, 451, 896, 985
TfiI	GAWTC	5 cut(s)	45, 460, 683, 804, 956
Tru1I	TTAA	3 cut(s)	540, 840, 903
Tru9I	TTAA	3 cut(s)	540, 840, 903
TscAI	CASTG	3 cut(s)	760, 973, 1126
TseI	GCWGC	5 cut(s)	496, 547, 797, 896, 985
TspDTI	ATGAA	1 cut(s)	878
TspRI	CASTG	3 cut(s)	760, 973, 1126
VpaK11BI	GGWCC	4 cut(s)	19, 40, 127, 689
VspI	ATTAAT	1 cut(s)	540
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	2 cut(s)	7, 938
XmiI	GTMKAC	1 cut(s)	695
XspI	CTAG	3 cut(s)	663, 770, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.