MD07G1264000.v1.1

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
33266574 .. 33271218
4645 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1264000.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGAAGTCTGGGTTTGCTTTCATCTATATGGAGGATGAGAGAGATGCTGAATATGCCATTAGGGGACTTGACCGAAAAGAATTTGGTCGAAAAGGACGCAGGCTTCGTGTTGAATGGACGAAGGTAGCAAATCAAGAACGTGGTGCTAGAAGACCTGGTGCATCAAGAAGATCTTCGACTAATACAAGACCTTCAAAGACCTTGTTTGTTATAAATTTTGATCCTTATCACACAAGGACCAAAGATTTGGAGAGGCATTTTGATTCATATGGGAAAATCGTCAGCGTAAGGATCAGAAGAAATTTTGCATTTGTTCAGTATGAGTCACAAGAGGATGCTACCAGGGCATTGGAAGCTACAAACATGAGCAAGCTGATGGATCGAGTTATATCGGTGGAATATGCAGTTCGTGATGACGATGAAAGAGGAGATGGATTTAGCCCTGACCGGAGAAGTCGTGATAGGTCTCCAGACAGAGGCCGTGATAGAAGAAGGTCCCCAAGCCCCTACAAAAGAGAGAGAGGTAGCCCTGATTATGGCCGAGGCCCTAGCCCTGGTCCCTACAGGAGAGAAAGGGGTAGTCCTGATTATGGACGTGCAGCAAGTCCTTATAGAAGGGAGAGAGTTAGTTCTGACTATGGCCGTGGGCGCAGCCCAAGTCCATATAGGAGGGACAGGTCTGATCATGGCCGCGTCTCCAGTCGTAGTCCTAGAAAAGAGAGGGTGAGTGCTGACCGTGTTCATGATCGTACCCGTAGTCCTTATGGAAGAGAGAGGCCTGGGGATGACAATGGCCATGGTCCCAGTCGTAGCTCATATAAGAGAGATAGGGGTAGTCCTGAAAATGGTCCCAGACGTAGTCCATATAAGAGAGAACGGGATAGTCCAAGGGATAGTCCTGAAAATGGCCGTCTCCCAAGCAGTAGTCCATATAAGAGAGAGAGGGTCAGTCCTGAAAATGGTGGTGGCCCCAGCGGTAGTCCTTATGAAACAGAGAGGGCCAGCCCGGAAAATGGTCGTGTTGCAAGCCTAAATTCTGCGCCTGAAGCTAGGGATAGCCCCAACTATGGCGGGCCTGAAAGCCCCATGAATGAGAGATATAGCAGCCGTTCACCGCAAGCTGAGGAGGAATGA

Protein Analysis

378

Amino Acids

43.29

Weight (kDa)

10.28

Isoelectric Point (pI)

83.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 68 - 130 6.2e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 212
AccII CGCG 1 cut(s) 693
AciI CCGC 4 cut(s) 691, 975, 1071, 1115
AclWI GGATC 3 cut(s) 215, 299, 387
AcoI YGGCCR 5 cut(s) 538, 640, 688, 793, 907
AcsI RAATTY 4 cut(s) 80, 214, 301, 1033
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 1 cut(s) 751
AfiI CCNNNNNNNGG 9 cut(s) 476, 536, 554, 590, 845, 905, 959, 1013, 1067
AgsI TTSAA 2 cut(s) 113, 195
AjiI CACGTC 1 cut(s) 596
AjnI CCWGG 4 cut(s) 154, 341, 553, 778
AluBI AGCT 5 cut(s) 356, 373, 813, 1049, 1121
AluI AGCT 5 cut(s) 356, 373, 813, 1049, 1121
Alw26I GTCTC 3 cut(s) 471, 700, 917
AlwI GGATC 3 cut(s) 215, 299, 387
ApeKI GCWGC 3 cut(s) 599, 651, 1104
ApoI RAATTY 4 cut(s) 80, 214, 301, 1033
ArsI GACNNNNNNTTYG 4 cut(s) 87, 119, 229, 261
Asp700I GAANNNNTTC 1 cut(s) 172
AspLEI GCGC 2 cut(s) 651, 1042
AspS9I GGNCC 9 cut(s) 237, 495, 545, 557, 800, 848, 968, 999, 1073
AsuC2I CCSGG 1 cut(s) 1007
AsuHPI GGTGA 2 cut(s) 736, 1104
AvaII GGWCC 5 cut(s) 237, 495, 557, 800, 848
BalI TGGCCA 1 cut(s) 795
BbsI GAAGAC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 3 cut(s) 611, 663, 1116
BccI CCATC 2 cut(s) 370, 425
BceAI ACGGC 4 cut(s) 465, 627, 894, 1092
BciT130I CCWGG 4 cut(s) 156, 343, 555, 780
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 1007
BcoDI GTCTC 3 cut(s) 471, 700, 917
BfaI CTAG 4 cut(s) 147, 549, 711, 1050
BfmI CTRYAG 1 cut(s) 562
BglII AGATCT 1 cut(s) 170
BisI GCNGC 4 cut(s) 600, 652, 691, 1105
BlsI GCNGC 4 cut(s) 601, 653, 692, 1106
Bme1390I CCNGG 5 cut(s) 156, 343, 555, 780, 1007
Bme18I GGWCC 5 cut(s) 237, 495, 557, 800, 848
BmgBI CACGTC 1 cut(s) 596
BmgT120I GGNCC 9 cut(s) 237, 495, 545, 557, 800, 848, 968, 999, 1073
BmiI GGNNCC 5 cut(s) 497, 559, 802, 850, 970
BmrFI CCNGG 5 cut(s) 156, 343, 555, 780, 1007
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 3 cut(s) 34, 170, 325
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 157
BpmI CTGGAG 2 cut(s) 453, 682
Bpu10I CCTNAGC 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 1007
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 7 cut(s) 342, 541, 553, 643, 779, 796, 887
BsaWI WCCGGW 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 442, 472
Bsc4I CCNNNNNNNGG 9 cut(s) 476, 536, 554, 590, 845, 905, 959, 1013, 1067
Bse1I ACTGG 2 cut(s) 699, 804
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 4 cut(s) 156, 343, 555, 780
BseDI CCNNGG 7 cut(s) 342, 541, 553, 643, 779, 796, 887
BseGI GGATG 3 cut(s) 40, 340, 790
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 9 cut(s) 476, 536, 554, 590, 845, 905, 959, 1013, 1067
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 2 cut(s) 699, 804
BseRI GAGGAG 1 cut(s) 441
BseXI GCAGC 3 cut(s) 611, 663, 1116
BseYI CCCAGC 1 cut(s) 971
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 693
BsiSI CCGG 2 cut(s) 448, 1007
BslFI GGGAC 6 cut(s) 78, 481, 543, 686, 786, 834
BslI CCNNNNNNNGG 9 cut(s) 476, 536, 554, 590, 845, 905, 959, 1013, 1067
BsmAI GTCTC 3 cut(s) 471, 700, 917
BsmBI CGTCTC 2 cut(s) 700, 917
BsmFI GGGAC 6 cut(s) 78, 481, 543, 686, 786, 834
Bso31I GGTCTC 1 cut(s) 471
Bsp143I GATC 6 cut(s) 170, 220, 291, 379, 682, 745
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 4 cut(s) 691, 975, 1071, 1115
BspCNI CTCAG 1 cut(s) 1114
BspFNI CGCG 1 cut(s) 693
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 5 cut(s) 497, 559, 802, 850, 970
BspPI GGATC 3 cut(s) 215, 299, 387
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 2 cut(s) 699, 804
BssECI CCNNGG 7 cut(s) 342, 541, 553, 643, 779, 796, 887
BssMI GATC 6 cut(s) 170, 220, 291, 379, 682, 745
BssT1I CCWWGG 2 cut(s) 796, 887
Bst2UI CCWGG 4 cut(s) 156, 343, 555, 780
Bst4CI ACNGT 1 cut(s) 737
Bst6I CTCTTC 1 cut(s) 763
BstC8I GCNNGC 6 cut(s) 101, 371, 1003, 1027, 1073, 1119
BstDEI CTNAG 1 cut(s) 1122
BstDSI CCRYGG 2 cut(s) 643, 796
BstF5I GGATG 3 cut(s) 40, 340, 790
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 2 cut(s) 651, 1042
BstKTI GATC 6 cut(s) 173, 223, 294, 382, 685, 748
BstMAI GTCTC 3 cut(s) 471, 700, 917
BstMBI GATC 6 cut(s) 170, 220, 291, 379, 682, 745
BstMWI GCNNNNNNNGC 5 cut(s) 53, 344, 353, 648, 1046
BstNI CCWGG 4 cut(s) 156, 343, 555, 780
BstSCI CCNGG 5 cut(s) 154, 341, 553, 778, 1005
BstSFI CTRYAG 1 cut(s) 562
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 611, 663, 1116
BstV2I GAAGAC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 170
BstXI CCANNNNNNTGG 2 cut(s) 247, 349
BstYI RGATCY 1 cut(s) 170
BtgI CCRYGG 2 cut(s) 643, 796
BtrI CACGTC 1 cut(s) 596
BtsCI GGATG 3 cut(s) 40, 340, 790
Cac8I GCNNGC 6 cut(s) 101, 371, 1003, 1027, 1073, 1119
CciI TCATGA 1 cut(s) 742
CfoI GCGC 2 cut(s) 651, 1042
Cfr13I GGNCC 9 cut(s) 237, 495, 545, 557, 800, 848, 968, 999, 1073
CseI GACGC 2 cut(s) 105, 682
CsiI ACCWGGT 1 cut(s) 154
Csp6I GTAC 1 cut(s) 750
CviAII CATG 5 cut(s) 364, 686, 743, 797, 1087
CviQI GTAC 1 cut(s) 750
DdeI CTNAG 1 cut(s) 1122
DpnI GATC 6 cut(s) 172, 222, 293, 381, 684, 747
DpnII GATC 6 cut(s) 170, 220, 291, 379, 682, 745
EaeI YGGCCR 5 cut(s) 538, 640, 688, 793, 907
Eam1104I CTCTTC 1 cut(s) 763
EarI CTCTTC 1 cut(s) 763
Eco130I CCWWGG 2 cut(s) 796, 887
Eco147I AGGCCT 1 cut(s) 778
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 5 cut(s) 237, 495, 557, 800, 848
Eco57I CTGAAG 1 cut(s) 1065
EcoO109I RGGNCCY 2 cut(s) 495, 545
EcoRII CCWGG 4 cut(s) 154, 341, 553, 778
EcoT14I CCWWGG 2 cut(s) 796, 887
ErhI CCWWGG 2 cut(s) 796, 887
Esp3I CGTCTC 2 cut(s) 700, 917
FaeI CATG 5 cut(s) 367, 689, 746, 800, 1090
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 6 cut(s) 78, 481, 543, 686, 786, 834
FatI CATG 5 cut(s) 363, 685, 742, 796, 1086
FauI CCCGC 1 cut(s) 1064
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 4 cut(s) 600, 652, 691, 1105
FokI GGATG 3 cut(s) 47, 347, 797
Fsp4HI GCNGC 4 cut(s) 600, 652, 691, 1105
FspBI CTAG 4 cut(s) 147, 549, 711, 1050
GlaI GCGC 2 cut(s) 650, 1041
GluI GCNGC 4 cut(s) 600, 652, 691, 1105
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 2 cut(s) 453, 682
HapII CCGG 2 cut(s) 448, 1007
HgaI GACGC 2 cut(s) 105, 682
HhaI GCGC 2 cut(s) 651, 1042
Hin1II CATG 5 cut(s) 367, 689, 746, 800, 1090
Hin6I GCGC 2 cut(s) 649, 1040
HinP1I GCGC 2 cut(s) 649, 1040
HinfI GANTC 2 cut(s) 263, 323
HpaII CCGG 2 cut(s) 448, 1007
HphI GGTGA 2 cut(s) 736, 1104
Hpy166II GTNNAC 1 cut(s) 1112
Hpy188I TCNGA 3 cut(s) 296, 634, 682
Hpy8I GTNNAC 1 cut(s) 1112
HpyAV CCTTC 4 cut(s) 115, 201, 486, 609
HpyCH4III ACNGT 1 cut(s) 737
HpyCH4IV ACGT 3 cut(s) 139, 595, 856
HpyCH4V TGCA 5 cut(s) 161, 308, 404, 599, 1025
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 344, 353, 648, 1046
HpyF3I CTNAG 1 cut(s) 1122
HpySE526I ACGT 3 cut(s) 139, 595, 856
Hsp92II CATG 5 cut(s) 367, 689, 746, 800, 1090
HspAI GCGC 2 cut(s) 649, 1040
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 6 cut(s) 170, 220, 291, 379, 682, 745
Lsp1109I GCAGC 3 cut(s) 611, 663, 1116
LweI GCATC 3 cut(s) 34, 170, 325
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 4 cut(s) 147, 549, 711, 1050
MaeII ACGT 3 cut(s) 139, 595, 856
MaeIII GTNAC 1 cut(s) 324
MalI GATC 6 cut(s) 172, 222, 293, 381, 684, 747
MboI GATC 6 cut(s) 170, 220, 291, 379, 682, 745
MboII GAAGA 6 cut(s) 162, 165, 180, 309, 501, 780
MflI RGATCY 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 4 cut(s) 80, 214, 301, 1033
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 795
MroXI GAANNNNTTC 1 cut(s) 172
MscI TGGCCA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 26
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 975
MspI CCGG 2 cut(s) 448, 1007
MspR9I CCNGG 5 cut(s) 156, 343, 555, 780, 1007
MvaI CCWGG 4 cut(s) 156, 343, 555, 780
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 5 cut(s) 53, 344, 353, 648, 1046
NciI CCSGG 1 cut(s) 1007
NcoI CCATGG 1 cut(s) 796
NdeI CATATG 1 cut(s) 268
NdeII GATC 6 cut(s) 170, 220, 291, 379, 682, 745
NlaIII CATG 5 cut(s) 367, 689, 746, 800, 1090
NlaIV GGNNCC 5 cut(s) 497, 559, 802, 850, 970
NmeAIII GCCGAG 1 cut(s) 566
NmuCI GTSAC 1 cut(s) 324
PagI TCATGA 1 cut(s) 742
PceI AGGCCT 1 cut(s) 778
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 1 cut(s) 263
PflFI GACNNNGTC 1 cut(s) 858
PkrI GCNGC 4 cut(s) 601, 653, 692, 1106
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 495
PsiI TTATAA 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 495
Psp6I CCWGG 4 cut(s) 154, 341, 553, 778
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 4 cut(s) 154, 341, 553, 778
PspN4I GGNNCC 5 cut(s) 497, 559, 802, 850, 970
PspPI GGNCC 9 cut(s) 237, 495, 545, 557, 800, 848, 968, 999, 1073
PspPPI RGGWCCY 1 cut(s) 495
PsuI RGATCY 1 cut(s) 170
PsyI GACNNNGTC 1 cut(s) 858
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
RseI CAYNNNNRTG 1 cut(s) 26
SatI GCNGC 4 cut(s) 600, 652, 691, 1105
Sau3AI GATC 6 cut(s) 170, 220, 291, 379, 682, 745
Sau96I GGNCC 9 cut(s) 237, 495, 545, 557, 800, 848, 968, 999, 1073
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 5 cut(s) 156, 343, 555, 780, 1007
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 3 cut(s) 34, 170, 325
SfcI CTRYAG 1 cut(s) 562
SinI GGWCC 5 cut(s) 237, 495, 557, 800, 848
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 4 cut(s) 80, 214, 301, 1033
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 4 cut(s) 691, 975, 1071, 1115
SspMI CTAG 4 cut(s) 147, 549, 711, 1050
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 5 cut(s) 154, 341, 553, 778, 1005
StyI CCWWGG 2 cut(s) 796, 887
TaaI ACNGT 1 cut(s) 737
TaiI ACGT 3 cut(s) 142, 598, 859
TaqI TCGA 3 cut(s) 88, 176, 382
TaqII GACCGA 1 cut(s) 87
TasI AATT 4 cut(s) 80, 214, 301, 1033
TauI GCSGC 1 cut(s) 693
TfiI GAWTC 1 cut(s) 263
TseFI GTSAC 1 cut(s) 324
TseI GCWGC 3 cut(s) 599, 651, 1104
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 7 cut(s) 10, 17, 255, 435, 731, 1002, 1103
Tth111I GACNNNGTC 1 cut(s) 858
VpaK11BI GGWCC 5 cut(s) 237, 495, 557, 800, 848
XapI RAATTY 4 cut(s) 80, 214, 301, 1033
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 4 cut(s) 147, 549, 711, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.