RLG00000028343

Arginine serine-rich-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000932
Physical Location & Seq
Reverse (-)
21600185 .. 21604262
4078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028343

Sequence Viewer

Length: 948 bp
ATGTCTTTTCAAAGCATTAGAGAGAGGTCAATTTCCCCGTCCACGCTTTTGCTCATATCAGACATACAAATCATTTTGCCTCCTGGACTTAACCTAGGGAGACGGACTGTTCGGGTTGTCTTCGAGCTTCAAAGCATTTCAAGAGCTGTTGGCGCGACTACTTCAACTAGGGTTCCTCTCAGCTCTCCCTCAAAATACTCCAAGGGCGTAAAAAGATTGGAGCTTGAAGAAAATGAAGCCTATATTCTGGTGGATGTCAAGTCTGGATTTGCCTTTGTCTATATGGATGATGAGCGAGATGCTGAGTATGCAATTCGAAAGCTTGACAGGACAGAATTTGGTAGGAAGGGACGCCGTCTTCGGATTGAGTGGACCAAGCATGAACGCGGGATTAGGAGATCTGATGATTCAAAAAAACCTCCAGCGAACACAAAGCCCTCAAAAACCCTGTTTGTTATCAATTTTGATCCTATCCATACCAGGACAAGGGATCTGGAGAAGCACTTTGATCTATATGGGAAAATAATGAACATAAGGATTAGAAGAAATTTTGCATTTATTCAATATGAATCACAGGAGGATGCTACCAAAGCATTGGATGCAACAAATTCAAGCAAGTTCATGGACCGCGTTATTTCAGTGGAGTATGCTGTTCGTGATGATGATGATAGAAGAAATGGCCACAGTCCTGATAGAAGGGGCCGTGATACGTCCCCTGAGAGGAGAAGAAGCAATGATCGTGGGCGATCTCCAAGTCCATACCGCAGAGATAGGGCTAGTCCGGATTATGGCCATGGCTCCCGTCAGAATTCTAGAGCTGAACCAAGAAGAAGTCCTGAGTATGATAGAGCTCCAAGAAGAAGTCCTGATTATGAGAGAGCTGCAAGCCCAGTCAATGATAGATACCACAGCCGTTCACCCCCAGCGCGGGAAAGATCTCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05168 map03040 map05168
Pfam Domains
Protein Families
RRM_1 RrnaAD

Protein Analysis

316

Amino Acids

36.63

Weight (kDa)

10.3

Isoelectric Point (pI)

80.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 150 - 212 2.7e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 155, 387, 630, 928
AccIII TCCGGA 1 cut(s) 781
AciI CCGC 4 cut(s) 387, 628, 763, 928
AclWI GGATC 3 cut(s) 461, 498, 936
AcoI YGGCCR 2 cut(s) 679, 790
AcsI RAATTY 4 cut(s) 335, 547, 607, 808
AcyI GRCGYC 1 cut(s) 352
AfiI CCNNNNNNNGG 5 cut(s) 486, 720, 788, 927, 928
AgsI TTSAA 8 cut(s) 11, 131, 141, 165, 227, 411, 563, 612
AjnI CCWGG 2 cut(s) 82, 479
AluBI AGCT 8 cut(s) 127, 146, 183, 223, 322, 818, 851, 881
AluI AGCT 8 cut(s) 127, 146, 183, 223, 322, 818, 851, 881
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 3 cut(s) 461, 498, 936
Aor13HI TCCGGA 1 cut(s) 781
AoxI GGCC 3 cut(s) 679, 700, 790
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 4 cut(s) 335, 547, 607, 808
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 342, 374
AspA2I CCTAGG 1 cut(s) 94
AspLEI GCGC 2 cut(s) 155, 928
AspS9I GGNCC 3 cut(s) 372, 625, 700
AsuHPI GGTGA 1 cut(s) 909
AsuII TTCGAA 1 cut(s) 316
AvaII GGWCC 2 cut(s) 372, 625
AvrII CCTAGG 1 cut(s) 94
BalI TGGCCA 2 cut(s) 681, 792
BanII GRGCYC 1 cut(s) 853
BbsI GAAGAC 2 cut(s) 112, 350
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 1 cut(s) 868
BceAI ACGGC 3 cut(s) 339, 687, 897
BciT130I CCWGG 2 cut(s) 84, 481
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 4 cut(s) 95, 168, 777, 813
BglII AGATCT 2 cut(s) 398, 935
BisI GCNGC 1 cut(s) 882
BlnI CCTAGG 1 cut(s) 94
BlsI GCNGC 1 cut(s) 883
Bme1390I CCNGG 2 cut(s) 84, 481
Bme18I GGWCC 2 cut(s) 372, 625
BmgT120I GGNCC 3 cut(s) 372, 625, 700
BmiI GGNNCC 3 cut(s) 174, 701, 799
BmrFI CCNGG 2 cut(s) 84, 481
BmrI ACTGGG 1 cut(s) 884
BmsI GCATC 3 cut(s) 289, 571, 589
BmuI ACTGGG 1 cut(s) 884
BpiI GAAGAC 2 cut(s) 112, 350
BpmI CTGGAG 2 cut(s) 405, 515
Bpu14I TTCGAA 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 940
BsaHI GRCGYC 1 cut(s) 352
BsaJI CCNNGG 3 cut(s) 94, 201, 793
BsaWI WCCGGW 1 cut(s) 781
Bsc4I CCNNNNNNNGG 5 cut(s) 486, 720, 788, 927, 928
Bse1I ACTGG 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 739
Bse8I GATNNNNATC 1 cut(s) 940
BseAI TCCGGA 1 cut(s) 781
BseBI CCWGG 2 cut(s) 84, 481
BseDI CCNNGG 3 cut(s) 94, 201, 793
BseGI GGATG 4 cut(s) 259, 292, 586, 604
BseJI GATNNNNATC 1 cut(s) 940
BseLI CCNNNNNNNGG 5 cut(s) 486, 720, 788, 927, 928
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 4 cut(s) 193, 294, 708, 828
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 1 cut(s) 868
BseYI CCCAGC 1 cut(s) 922
Bsh1236I CGCG 4 cut(s) 155, 387, 630, 928
BshFI GGCC 3 cut(s) 681, 702, 792
BsiHKAI GWGCWC 1 cut(s) 853
BsiSI CCGG 1 cut(s) 782
BslFI GGGAC 2 cut(s) 363, 697
BslI CCNNNNNNNGG 5 cut(s) 486, 720, 788, 927, 928
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 363, 697
BsnI GGCC 3 cut(s) 681, 702, 792
Bsp119I TTCGAA 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 853
Bsp13I TCCGGA 1 cut(s) 781
Bsp143I GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
Bsp19I CCATGG 1 cut(s) 793
BspACI CCGC 4 cut(s) 387, 628, 763, 928
BspANI GGCC 3 cut(s) 681, 702, 792
BspCNI CTCAG 4 cut(s) 192, 295, 709, 829
BspEI TCCGGA 1 cut(s) 781
BspFNI CGCG 4 cut(s) 155, 387, 630, 928
BspLI GGNNCC 3 cut(s) 174, 701, 799
BspPI GGATC 3 cut(s) 461, 498, 936
BspT104I TTCGAA 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 739
BsrI ACTGG 1 cut(s) 890
BssECI CCNNGG 3 cut(s) 94, 201, 793
BssMI GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 3 cut(s) 94, 201, 793
Bst2UI CCWGG 2 cut(s) 84, 481
Bst4CI ACNGT 2 cut(s) 109, 686
BstACI GRCGYC 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 886
BstDEI CTNAG 4 cut(s) 179, 303, 717, 837
BstDSI CCRYGG 1 cut(s) 793
BstF5I GGATG 4 cut(s) 259, 292, 586, 604
BstFNI CGCG 4 cut(s) 155, 387, 630, 928
BstHHI GCGC 2 cut(s) 155, 928
BstKTI GATC 8 cut(s) 401, 469, 493, 511, 739, 749, 938, 944
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
BstMWI GCNNNNNNNGC 4 cut(s) 152, 308, 590, 599
BstNI CCWGG 2 cut(s) 84, 481
BstSCI CCNGG 2 cut(s) 82, 479
BstUI CGCG 4 cut(s) 155, 387, 630, 928
BstV1I GCAGC 1 cut(s) 868
BstV2I GAAGAC 2 cut(s) 112, 350
BstX2I RGATCY 3 cut(s) 398, 490, 935
BstXI CCANNNNNNTGG 1 cut(s) 595
BstYI RGATCY 3 cut(s) 398, 490, 935
BsuRI GGCC 3 cut(s) 681, 702, 792
BtgI CCRYGG 1 cut(s) 793
BtsCI GGATG 4 cut(s) 259, 292, 586, 604
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 886
CfoI GCGC 2 cut(s) 155, 928
Cfr13I GGNCC 3 cut(s) 372, 625, 700
CseI GACGC 1 cut(s) 360
CspCI CAANNNNNGTGG 2 cut(s) 721, 756
CviAII CATG 3 cut(s) 380, 622, 794
DdeI CTNAG 4 cut(s) 179, 303, 717, 837
DpnI GATC 8 cut(s) 400, 468, 492, 510, 738, 748, 937, 943
DpnII GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
EaeI YGGCCR 2 cut(s) 679, 790
Ecl136II GAGCTC 1 cut(s) 851
Eco130I CCWWGG 3 cut(s) 94, 201, 793
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 372, 625
Eco53kI GAGCTC 1 cut(s) 851
EcoICRI GAGCTC 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 82, 479
EcoT14I CCWWGG 3 cut(s) 94, 201, 793
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 3 cut(s) 94, 201, 793
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 3 cut(s) 383, 625, 797
FaqI GGGAC 2 cut(s) 363, 697
FatI CATG 3 cut(s) 379, 621, 793
FauI CCCGC 2 cut(s) 380, 921
Fnu4HI GCNGC 1 cut(s) 882
FokI GGATG 4 cut(s) 266, 299, 593, 611
FriOI GRGCYC 1 cut(s) 853
Fsp4HI GCNGC 1 cut(s) 882
FspBI CTAG 4 cut(s) 95, 168, 777, 813
GlaI GCGC 2 cut(s) 154, 927
GluI GCNGC 1 cut(s) 882
GsaI CCCAGC 1 cut(s) 926
GsuI CTGGAG 2 cut(s) 405, 515
HaeIII GGCC 3 cut(s) 681, 702, 792
HapII CCGG 1 cut(s) 782
HgaI GACGC 1 cut(s) 360
HhaI GCGC 2 cut(s) 155, 928
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 3 cut(s) 383, 625, 797
Hin6I GCGC 2 cut(s) 153, 926
HinP1I GCGC 2 cut(s) 153, 926
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 2 cut(s) 407, 569
HpaII CCGG 1 cut(s) 782
HphI GGTGA 1 cut(s) 909
Hpy166II GTNNAC 3 cut(s) 42, 372, 917
Hpy188I TCNGA 4 cut(s) 61, 363, 403, 807
Hpy8I GTNNAC 3 cut(s) 42, 372, 917
HpyAV CCTTC 2 cut(s) 340, 690
HpyCH4III ACNGT 2 cut(s) 109, 686
HpyCH4IV ACGT 1 cut(s) 710
HpyCH4V TGCA 4 cut(s) 311, 554, 602, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 308, 590, 599
HpyF3I CTNAG 4 cut(s) 179, 303, 717, 837
HpySE526I ACGT 1 cut(s) 710
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 3 cut(s) 383, 625, 797
HspAI GCGC 2 cut(s) 153, 926
Kpn2I TCCGGA 1 cut(s) 781
Kzo9I GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
LmnI GCTCC 3 cut(s) 220, 803, 856
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 3 cut(s) 289, 571, 589
MaeI CTAG 4 cut(s) 95, 168, 777, 813
MaeII ACGT 1 cut(s) 710
MalI GATC 8 cut(s) 400, 468, 492, 510, 738, 748, 937, 943
MboI GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
MboII GAAGA 8 cut(s) 112, 239, 350, 555, 684, 738, 840, 870
MflI RGATCY 3 cut(s) 398, 490, 935
MhlI GDGCHC 1 cut(s) 853
MlsI TGGCCA 2 cut(s) 681, 792
MluCI AATT 7 cut(s) 30, 312, 335, 460, 547, 607, 808
MluNI TGGCCA 2 cut(s) 681, 792
MnlI CCTC 8 cut(s) 18, 90, 186, 199, 429, 448, 571, 714
Mox20I TGGCCA 2 cut(s) 681, 792
MroI TCCGGA 1 cut(s) 781
MscI TGGCCA 2 cut(s) 681, 792
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 2 cut(s) 681, 792
MspI CCGG 1 cut(s) 782
MspR9I CCNGG 2 cut(s) 84, 481
MvaI CCWGG 2 cut(s) 84, 481
MvnI CGCG 4 cut(s) 155, 387, 630, 928
MwoI GCNNNNNNNGC 4 cut(s) 152, 308, 590, 599
NcoI CCATGG 1 cut(s) 793
NdeII GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
NlaIII CATG 3 cut(s) 383, 625, 797
NlaIV GGNNCC 3 cut(s) 174, 701, 799
NspV TTCGAA 1 cut(s) 316
PfeI GAWTC 2 cut(s) 407, 569
PflFI GACNNNGTC 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 82
PkrI GCNGC 1 cut(s) 883
Psp124BI GAGCTC 1 cut(s) 853
Psp6I CCWGG 2 cut(s) 82, 479
PspFI CCCAGC 1 cut(s) 922
PspGI CCWGG 2 cut(s) 82, 479
PspN4I GGNNCC 3 cut(s) 174, 701, 799
PspPI GGNCC 3 cut(s) 372, 625, 700
PsuI RGATCY 3 cut(s) 398, 490, 935
PsyI GACNNNGTC 1 cut(s) 354
SacI GAGCTC 1 cut(s) 853
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 882
Sau3AI GATC 8 cut(s) 398, 466, 490, 508, 736, 746, 935, 941
Sau96I GGNCC 3 cut(s) 372, 625, 700
ScrFI CCNGG 2 cut(s) 84, 481
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 3 cut(s) 289, 571, 589
SfuI TTCGAA 1 cut(s) 316
SinI GGWCC 2 cut(s) 372, 625
Sse9I AATT 7 cut(s) 30, 312, 335, 460, 547, 607, 808
SsiI CCGC 4 cut(s) 387, 628, 763, 928
SspMI CTAG 4 cut(s) 95, 168, 777, 813
SstI GAGCTC 1 cut(s) 853
StyD4I CCNGG 2 cut(s) 82, 479
StyI CCWWGG 3 cut(s) 94, 201, 793
TaaI ACNGT 2 cut(s) 109, 686
TaiI ACGT 1 cut(s) 713
TaqI TCGA 3 cut(s) 123, 316, 940
TasI AATT 7 cut(s) 30, 312, 335, 460, 547, 607, 808
TfiI GAWTC 2 cut(s) 407, 569
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 645
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 5 cut(s) 249, 396, 542, 582, 610
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 645
Tth111I GACNNNGTC 1 cut(s) 354
VpaK11BI GGWCC 2 cut(s) 372, 625
XapI RAATTY 4 cut(s) 335, 547, 607, 808
XbaI TCTAGA 1 cut(s) 812
XmaJI CCTAGG 1 cut(s) 94
XspI CTAG 4 cut(s) 95, 168, 777, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.